Works by Peeper, Daniel S

Results: 47
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    CopywriteR: DNA copy number detection from off-target sequence data.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 49, doi. 10.1186/s13059-015-0617-1
    By:
    • Kuilman, Thomas;
    • Velds, Arno;
    • Kemper, Kristel;
    • Ranzani, Marco;
    • Bombardelli, Lorenzo;
    • Hoogstraat, Marlous;
    • Nevedomskaya, Ekaterina;
    • Guotai Xu;
    • de Ruiter, Julian;
    • Lolkema, Martijn P;
    • Ylstra, Bauke;
    • Jonkers, Jos;
    • Rottenberg, Sven;
    • Wessels, Lodewyk F;
    • Adams, David J;
    • Peeper, Daniel S;
    • Krijgsman, Oscar
    Publication type:
    Article
    3

    CopywriteR: DNA copy number detection from off-target sequence data.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0617-1
    By:
    • Kuilman, Thomas;
    • Velds, Arno;
    • Kemper, Kristel;
    • Ranzani, Marco;
    • Bombardelli, Lorenzo;
    • Hoogstraat, Marlous;
    • Nevedomskaya, Ekaterina;
    • Xu, Guotai;
    • de Ruiter, Julian;
    • Lolkema, Martijn P.;
    • Ylstra, Bauke;
    • Jonkers, Jos;
    • Rottenberg, Sven;
    • Wessels, Lodewyk F.;
    • Adams, David J.;
    • Peeper, Daniel S.;
    • Krijgsman, Oscar
    Publication type:
    Article
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    Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors.

    Published in:
    Molecular Systems Biology, 2018, v. 14, n. 3, p. 1, doi. 10.15252/msb.20177858
    By:
    • Azimi, Alireza;
    • Caramuta, Stefano;
    • Seashore‐Ludlow, Brinton;
    • Boström, Johan;
    • Robinson, Jonathan L;
    • Edfors, Fredrik;
    • Tuominen, Rainer;
    • Kemper, Kristel;
    • Krijgsman, Oscar;
    • Peeper, Daniel S;
    • Nielsen, Jens;
    • Hansson, Johan;
    • Egyhazi Brage, Suzanne;
    • Altun, Mikael;
    • Uhlen, Mathias;
    • Maddalo, Gianluca
    Publication type:
    Article
    8

    ROCK1 is a potential combinatorial drug target for BRAF mutant melanoma.

    Published in:
    Molecular Systems Biology, 2014, v. 10, n. 12, p. 1, doi. 10.15252/msb.20145450
    By:
    • Smit, Marjon A;
    • Maddalo, Gianluca;
    • Greig, Kylie;
    • Raaijmakers, Linsey M;
    • Possik, Patricia A;
    • Breukelen, Bas;
    • Cappadona, Salvatore;
    • Heck, Albert JR;
    • Altelaar, AF Maarten;
    • Peeper, Daniel S
    Publication type:
    Article
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    XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data.

    Published in:
    BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2353-5
    By:
    • Kluin, Roelof J. C.;
    • Kemper, Kristel;
    • Kuilman, Thomas;
    • de Ruiter, Julian R.;
    • Iyer, Vivek;
    • Forment, Josep V.;
    • Cornelissen-Steijger, Paulien;
    • de Rink, Iris;
    • ter Brugge, Petra;
    • Song, Ji-Ying;
    • Klarenbeek, Sjoerd;
    • McDermott, Ultan;
    • Jonkers, Jos;
    • Velds, Arno;
    • Adams, David J.;
    • Peeper, Daniel S.;
    • Krijgsman, Oscar
    Publication type:
    Article
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    MITF: More Interesting Traits, Folks!

    Published in:
    Pigment Cell & Melanoma Research, 2016, v. 29, n. 3, p. 263, doi. 10.1111/pcmr.12476
    By:
    • Kemper, Kristel;
    • Krijgsman, Oscar;
    • Peeper, Daniel S.
    Publication type:
    Article
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    Detailed imaging and genetic analysis reveal a secondary BRAF<sup>L</sup><sup>505H</sup> resistance mutation and extensive intrapatient heterogeneity in metastatic BRAF mutant melanoma patients treated with vemurafenib.

    Published in:
    Pigment Cell & Melanoma Research, 2015, v. 28, n. 3, p. 318, doi. 10.1111/pcmr.12347
    By:
    • Hoogstraat, Marlous;
    • Gadellaa ‐ van Hooijdonk, Christa G.;
    • Ubink, Inge;
    • Besselink, Nicolle J. M.;
    • Pieterse, Mark;
    • Veldhuis, Wouter;
    • Stralen, Marijn;
    • Meijer, Eelco F. J.;
    • Willems, Stefan M.;
    • Hadders, Michael A.;
    • Kuilman, Thomas;
    • Krijgsman, Oscar;
    • Peeper, Daniel S.;
    • Koudijs, Marco J.;
    • Cuppen, Edwin;
    • Voest, Emile E.;
    • Lolkema, Martijn P.
    Publication type:
    Article
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    Absence of PD-L1 expression on tumor cells in the context of an activated immune infiltrate may indicate impaired IFNγ signaling in non-small cell lung cancer.

    Published in:
    PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0216864
    By:
    • Theelen, Willemijn S. M. E.;
    • Kuilman, Thomas;
    • Schulze, Katja;
    • Zou, Wei;
    • Krijgsman, Oscar;
    • Peters, Dennis D. G. C.;
    • Cornelissen, Sten;
    • Monkhorst, Kim;
    • Sarma, Pranamee;
    • Sumiyoshi, Teiko;
    • Amler, Lukas C.;
    • Willems, Stefan M.;
    • Blaauwgeers, Johannes L. G.;
    • van Noesel, Carel J. M.;
    • Peeper, Daniel S.;
    • van den Heuvel, Michel M.;
    • Kowanetz, Marcin
    Publication type:
    Article
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    Low MITF/AXL ratio predicts early resistance to multiple targeted drugs in melanoma.

    Published in:
    Nature Communications, 2014, v. 5, n. 12, p. 5712, doi. 10.1038/ncomms6712
    By:
    • Müller, Judith;
    • Krijgsman, Oscar;
    • Tsoi, Jennifer;
    • Robert, Lidia;
    • Hugo, Willy;
    • Song, Chunying;
    • Kong, Xiangju;
    • Possik, Patricia A.;
    • Cornelissen-Steijger, Paulien D. M.;
    • Foppen, Marnix H Geukes;
    • Kemper, Kristel;
    • Goding, Colin R.;
    • McDermott, Ultan;
    • Blank, Christian;
    • Haanen, John;
    • Graeber, Thomas G.;
    • Ribas, Antoni;
    • Lo, Roger S.;
    • Peeper, Daniel S.
    Publication type:
    Article
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    Reversal of pre-existing NGFR-driven tumor and immune therapy resistance.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17739-8
    By:
    • Boshuizen, Julia;
    • Vredevoogd, David W.;
    • Krijgsman, Oscar;
    • Ligtenberg, Maarten A.;
    • Blankenstein, Stephanie;
    • de Bruijn, Beaunelle;
    • Frederick, Dennie T.;
    • Kenski, Juliana C. N.;
    • Parren, Mara;
    • Brüggemann, Marieke;
    • Madu, Max F.;
    • Rozeman, Elisa A.;
    • Song, Ji-Ying;
    • Horlings, Hugo M.;
    • Blank, Christian U.;
    • van Akkooi, Alexander C. J.;
    • Flaherty, Keith T.;
    • Boland, Genevieve M.;
    • Peeper, Daniel S.
    Publication type:
    Article
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    Vemurafenib plus cobimetinib in unresectable stage IIIc or stage IV melanoma: response monitoring and resistance prediction with positron emission tomography and tumor characteristics (REPOSIT): study protocol of a phase II, open-label, multicenter study.

    Published in:
    2017
    By:
    • van der Hiel, Bernies;
    • Haanen, John B. A. G.;
    • Stokkel, Marcel P. M.;
    • Peeper, Daniel S.;
    • Jimenez, Connie R.;
    • Beijnen, Jos H.;
    • van de Wiel, Bart A.;
    • Boellaard, Ronald;
    • van den Eertwegh, Alfons J. M.;
    • REPOSIT study group
    Publication type:
    journal article
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    Author Correction: Reversal of pre-existing NGFR-driven tumor and immune therapy resistance.

    Published in:
    2023
    By:
    • Boshuizen, Julia;
    • Vredevoogd, David W.;
    • Krijgsman, Oscar;
    • Ligtenberg, Maarten A.;
    • Blankenstein, Stephanie;
    • de Bruijn, Beaunelle;
    • Frederick, Dennie T.;
    • Kenski, Juliana C. N.;
    • Parren, Mara;
    • Brüggemann, Marieke;
    • Madu, Max F.;
    • Rozeman, Elisa A.;
    • Song, Ji-Ying;
    • Horlings, Hugo M.;
    • Blank, Christian U.;
    • van Akkooi, Alexander C. J.;
    • Flaherty, Keith T.;
    • Boland, Genevieve M.;
    • Peeper, Daniel S.
    Publication type:
    Correction Notice
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    Acidity‐mediated induction of FoxP3<sup>+</sup> regulatory T cells.

    Published in:
    European Journal of Immunology, 2023, v. 53, n. 6, p. 1, doi. 10.1002/eji.202250258
    By:
    • Rao, Disha;
    • Stunnenberg, Johanna A.;
    • Lacroix, Ruben;
    • Dimitriadis, Petros;
    • Kaplon, Joanna;
    • Verburg, Fabienne;
    • van van Royen, Paula T.;
    • Hoefsmit, Esmée P.;
    • Renner, Kathrin;
    • Blank, Christian U.;
    • Peeper, Daniel S.
    Publication type:
    Article
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    Ubiquitin ligase STUB1 destabilizes IFNγ-receptor complex to suppress tumor IFNγ signaling.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29442-x
    By:
    • Apriamashvili, Georgi;
    • Vredevoogd, David W.;
    • Krijgsman, Oscar;
    • Bleijerveld, Onno B.;
    • Ligtenberg, Maarten A.;
    • de Bruijn, Beaunelle;
    • Boshuizen, Julia;
    • Traets, Joleen J. H.;
    • D'Empaire Altimari, Daniela;
    • van Vliet, Alex;
    • Lin, Chun-Pu;
    • Visser, Nils L.;
    • Londino, James D.;
    • Sanchez-Hodge, Rebekah;
    • Oswalt, Leah E.;
    • Altinok, Selin;
    • Schisler, Jonathan C.;
    • Altelaar, Maarten;
    • Peeper, Daniel S.
    Publication type:
    Article
    47

    Fatty acid 16:4(n-3) stimulates a GPR120-induced signaling cascade in splenic macrophages to promote chemotherapy resistance.

    Published in:
    FASEB Journal, 2017, v. 31, n. 5, p. 2195, doi. 10.1096/fj.201601248R
    By:
    • Houthuijzen, Julia M.;
    • Oosterom, Ilse;
    • Hudson, Brian D.;
    • Akira Hirasawa;
    • Daenen, Laura G. M.;
    • McLean, Chelsea M.;
    • Hansen, Steffen V. F.;
    • van Jaarsveld, Marijn T. M.;
    • Peeper, Daniel S.;
    • Sadatmand, Sahar Jafari;
    • Roodhart, Jeanine M. L.;
    • van de Lest, Chris H. A.;
    • Ulven, Trond;
    • Kenji Ishihara;
    • Milligan, Graeme;
    • Voest, Emile E.
    Publication type:
    Article