Works by Peddada, Shyamal

Results: 119

Two Non-Negative Estimators for the Model With a Common Mean.

Published in:

Communications in Statistics: Simulation & Computation, 1989, v. 18, n. 2, p. 501, doi. 10.1080/03610918908812773

By:

Peddada, Shyamal Das

Publication type:

Article

Psychosocial and behavioral pathways of metabolic syndrome in cancer caregivers.

Published in:

2019

By:

Steel, Jennifer L.;
Cheng, Hannah;
Pathak, Ritambhara;
Wang, Yisi;
Miceli, Jessica;
Hecht, Carol Lynn;
Haggerty, Denise;
Peddada, Shyamal;
Geller, David A.;
Marsh, Wallis;
Antoni, Michael;
Jones, Reyna;
Kamarck, Thomas;
Tsung, Allan

Publication type:

journal article

Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome.

Published in:

2017

By:

Hill‐Burns, Erin M.;
Debelius, Justine W.;
Morton, James T.;
Wissemann, William T.;
Lewis, Matthew R.;
Wallen, Zachary D.;
Peddada, Shyamal D.;
Factor, Stewart A.;
Molho, Eric;
Zabetian, Cyrus P.;
Knight, Rob;
Payami, Haydeh;
Hill-Burns, Erin M

Publication type:

journal article

Individual and joint prevalence of three nonmotor symptoms of PD in the US general population.

Published in:

Movement Disorders, 2014, v. 29, n. 10, p. 1316, doi. 10.1002/mds.25950

By:

Chen, Honglei;
Huang, Xuemei;
Guo, Xuguang;
Peddada, Shyamal

Publication type:

Article

Unique microRNA alterations in hepatocellular carcinomas arising either spontaneously or due to chronic exposure to Ginkgo biloba extract (GBE) in B6C3F1/N mice.

Published in:

Archives of Toxicology, 2020, v. 94, n. 7, p. 2523, doi. 10.1007/s00204-020-02749-8

By:

Yamashita, Haruhiro;
Surapureddi, Sailesh;
Kovi, Ramesh C.;
Bhusari, Sachin;
Ton, Thai Vu;
Li, Jian-Liang;
Shockley, Keith R.;
Peddada, Shyamal D.;
Gerrish, Kevin E.;
Rider, Cynthia V.;
Hoenerhoff, Mark J.;
Sills, Robert C.;
Pandiri, Arun R.

Publication type:

Article

Identification of a core set of signature cell cycle genes whose relative order of time to peak expression is conserved across species.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2823

By:

Fernández, Miguel A.;
Rueda, Cristina;
Peddada, Shyamal D.

Publication type:

Article

Principal component analysis-based filtering improves detection for Affymetrix gene expression arrays.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. e86, doi. 10.1093/nar/gkr241

By:

Lu, Jun;
Kerns, Robnet T.;
Peddada, Shyamal D.;
Bushel, Pierre R.

Publication type:

Article

First trimester mechanisms of gestational sac placental and foetal teratogenicity: a framework for birth cohort studies.

Published in:

2021

By:

Adibi, Jennifer J;
Layden, Alexander J;
Birru, Rahel L;
Miragaia, Alexandra;
Xun, Xiaoshuang;
Smith, Megan C;
Yin, Qing;
Millenson, Marisa E;
O'Connor, Thomas G;
Barrett, Emily S;
Snyder, Nathaniel W;
Peddada, Shyamal;
Mitchell, Rod T

Publication type:

journal article

A geometric approach to determine association and coherence of the activation times of cell-cycling genes under differing experimental conditions.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2521, doi. 10.1093/bioinformatics/bth274

By:

Delong Liu;
Clarice R. Weinberg;
Shyamal D. Peddada

Publication type:

Article

Second-Trimester Placental and Thyroid Hormones Are Associated With Cognitive Development From Ages 1 to 3 Years.

Published in:

Journal of the Endocrine Society, 2021, v. 5, n. 5, p. 1, doi. 10.1210/jendso/bvab027

By:

Adibi, Jennifer J;
Xun, Xiaoshuang;
Zhao, Yaqi;
Yin, Qing;
LeWinn, Kaja;
Bush, Nicole R;
Panigrahy, Ashok;
Peddada, Shyamal;
Alfthan, Henrik;
Stenman, Ulf-Håkan;
Tylavsky, Frances;
Koistinen, Hannu

Publication type:

Article

A hierarchical functional data analytic approach for analyzing physiologically based pharmacokinetic models.

Published in:

Environmetrics, 2013, v. 24, n. 3, p. 172, doi. 10.1002/env.2198

By:

Mandal, Siddhartha;
Sen, Pranab K.;
Peddada, Shyamal D.

Publication type:

Article

Development of gut microbiota in infants not exposed to medical interventions.

Published in:

APMIS, 2011, v. 119, n. 1, p. 17, doi. 10.1111/j.1600-0463.2010.02688.x

By:

EGGESBØ, MERETE;
MOEN, BIRGITTE;
PEDDADA, SHYAMAL;
BAIRD, DONNA;
RUGTVEIT, JARLE;
MIDTVEDT, TORE;
BUSHEL, PIERRE R.;
SEKELJA, MONIKA;
RUDI, KNUT

Publication type:

Article

Body Composition Analyses Require Compositional Data Analytic (CoDA) Methods.

Published in:

2021

By:

Tilves, Curtis;
Peddada, Shyamal;
Miljkovic, Iva

Publication type:

journal article

Associations of Thigh and Abdominal Adipose Tissue Radiodensity with Glucose and Insulin in Nondiabetic African-Ancestry Men.

Published in:

2020

By:

Tilves, Curtis;
Zmuda, Joseph M.;
Kuipers, Allison L.;
Carr, J. Jeffrey;
Terry, James G.;
Wheeler, Victor;
Peddada, Shyamal D.;
Nair, Sangeeta;
Miljkovic, Iva

Publication type:

journal article

Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0645-2

By:

Iszatt, Nina;
Janssen, Stefan;
Lenters, Virissa;
Dahl, Cecilie;
Stigum, Hein;
Knight, Rob;
Mandal, Siddhartha;
Peddada, Shyamal;
González, Antonio;
Midtvedt, Tore;
Eggesbø, Merete

Publication type:

Article

Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases.

Published in:

Genes, 2023, v. 14, n. 6, p. 1239, doi. 10.3390/genes14061239

By:

Rahman, Gibraan;
McDonald, Daniel;
Gonzalez, Antonio;
Vázquez-Baeza, Yoshiki;
Jiang, Lingjing;
Casals-Pascual, Climent;
Hakim, Daniel;
Dilmore, Amanda Hazel;
Nowinski, Brent;
Peddada, Shyamal;
Knight, Rob

Publication type:

Article

Bootstrap confidence region estimation of the motion of rigid bodies.

Published in:

Journal of the American Statistical Association, 1996, v. 91, n. 433, p. 231, doi. 10.1080/01621459.1996.10476681

By:

Peddada, Shyamal Das;
Ted Chang

Publication type:

Article

Pitman's Measure of Closeness: A Comparison of Statistical Estimators (Book).

Published in:

1994

By:

Peddada, Shyamal D.

Publication type:

Book Review

Comment.

Published in:

Journal of the American Statistical Association, 1993, v. 88, n. 421, p. 67, doi. 10.1080/01621459.1993.10594291

By:

Peddada, Shyamal Das

Publication type:

Article

Reduced Disc Shedding and Phagocytosis of Photoreceptor Outer Segment Contributes to Kava Kava Extract–induced Retinal Degeneration in F344/N Rats.

Published in:

Toxicologic Pathology, 2018, v. 46, n. 5, p. 564, doi. 10.1177/0192623318778796

By:

Yamashita, Haruhiro;
Hoenerhoff, Mark J.;
Shockley, Keith R.;
Peddada, Shyamal D.;
Gerrish, Kevin E.;
Sutton, Deloris;
Cummings, Connie A.;
Wang, Yu;
Julie, Foley F.;
Behl, Mamta;
Waidyanatha, Suramya;
Sills, Robert C.;
Pandiri, Arun R.

Publication type:

Article

Chemical Exacerbation of Light-induced Retinal Degeneration in F344/N Rats in National Toxicology Program Rodent Bioassays.

Published in:

Toxicologic Pathology, 2016, v. 44, n. 6, p. 892, doi. 10.1177/0192623316650050

By:

Yamashita, Haruhiro;
Hoenerhoff, Mark J.;
Peddada, Shyamal D.;
Sills, Robert C.;
Pandiri, Arun R.

Publication type:

Article

Renal Cell Carcinomas in Vinylidene Chloride–exposed Male B6C3F1 Mice Are Characterized by Oxidative Stress and TP53 Pathway Dysregulation.

Published in:

Toxicologic Pathology, 2016, v. 44, n. 1, p. 71, doi. 10.1177/0192623315610820

By:

Hayes, Schantel A.;
Pandiri, Arun R.;
Ton, Thai-vu T.;
Hong, Hue-Hua L.;
Clayton, Natasha P.;
Shockley, Keith R.;
Peddada, Shyamal D.;
Gerrish, Kevin;
Wyde, Michael;
Sills, Robert C.;
Hoenerhoff, Mark J.

Publication type:

Article

Genomic Profiling Reveals Unique Molecular Alterations in Hepatoblastomas and Adjacent Hepatocellular Carcinomas in B6C3F1 Mice.

Published in:

Toxicologic Pathology, 2015, v. 43, n. 8, p. 1114, doi. 10.1177/0192623315599853

By:

Bhusari, Sachin;
Pandiri, Arun R.;
Nagai, Hiroaki;
Wang, Yu;
Foley, Julie;
Hong, Hue-Hua L.;
Ton, Thai-Vu;
DeVito, Michael;
Shockley, Keith R.;
Peddada, Shyamal D.;
Gerrish, Kevin E.;
Malarkey, David E.;
Hooth, Michelle J.;
Sills, Robert C.;
Hoenerhoff, Mark J.

Publication type:

Article

Uterine Carcinomas in Tetrabromobisphenol A–exposed Wistar Han Rats Harbor Increased Tp53 Mutations and Mimic High-grade Type I Endometrial Carcinomas in Women.

Published in:

Toxicologic Pathology, 2015, v. 43, n. 8, p. 1103, doi. 10.1177/0192623315599256

By:

Harvey, Janice B.;
Osborne, Tanasa S.;
Hong, Hue-Hua L.;
Bhusari, Sachin;
Ton, Tai-Vu;
Pandiri, Arun R.;
Masinde, Tiwanda;
Dunnick, June;
Peddada, Shyamal;
Elmore, Susan;
Hoenerhoff, Mark J.

Publication type:

Article

Gene Expression of Mesothelioma in Vinylidene Chloride–exposed F344/N Rats Reveal Immune Dysfunction, Tissue Damage, and Inflammation Pathways.

Published in:

Toxicologic Pathology, 2015, v. 43, n. 2, p. 171, doi. 10.1177/0192623314537885

By:

Blackshear, Pamela E.;
Pandiri, Arun R.;
Nagai, Hiroaki;
Bhusari, Sachin;
Hong, Hue-Hua;
Ton, Thai-Vu T.;
Clayton, Natasha P.;
Wyde, Michael;
Shockley, Keith R.;
Peddada, Shyamal D.;
Gerrish, Kevin E.;
Sills, Robert C.;
Hoenerhoff, Mark J.

Publication type:

Article

Spontaneous Mesotheliomas in F344/N Rats Are Characterized by Dysregulation of Cellular Growth and Immune Function Pathways.

Published in:

Toxicologic Pathology, 2014, v. 42, n. 5, p. 863, doi. 10.1177/0192623313501894

By:

Blackshear, Pamela E.;
Pandiri, Arun R.;
Ton, Thai-Vu T.;
Clayton, Natasha P.;
Shockley, Keith R.;
Peddada, Shyamal D.;
Gerrish, Kevin E.;
Sills, Robert C.;
Hoenerhoff, Mark J.

Publication type:

Article

Hepatocellular Carcinomas in B6C3F1 Mice Treated with Ginkgo biloba Extract for Two Years Differ from Spontaneous Liver Tumors in Cancer Gene Mutations and Genomic Pathways.

Published in:

Toxicologic Pathology, 2013, v. 41, n. 6, p. 826, doi. 10.1177/0192623312467520

By:

Hoenerhoff, Mark J.;
Pandiri, Arun R.;
Snyder, Stephanie A.;
Hong, Hue-Hua L.;
Ton, Thai-Vu;
Peddada, Shyamal;
Shockley, Keith;
Witt, Kristine;
Chan, Po;
Rider, Cynthia;
Kooistra, Linda;
Nyska, Abraham;
Sills, Robert C.

Publication type:

Article

Differential Transcriptomic Analysis of Spontaneous Lung Tumors in B6C3F1 Mice: Comparison to Human Non–Small Cell Lung Cancer.

Published in:

Toxicologic Pathology, 2012, v. 40, n. 8, p. 1141, doi. 10.1177/0192623312447543

By:

Pandiri, Arun R.;
Sills, Robert C.;
Ziglioli, Vincent;
Ton, Thai-Vu T;
Hong, Hue–Hua L.;
Lahousse, Stephanie A.;
Gerrish, Kevin E.;
Auerbach, Scott S.;
Shockley, Keith R.;
Bushel, Pierre R.;
Peddada, Shyamal D.;
Hoenerhoff, Mark J.

Publication type:

Article

Gender Differences in Chemical Carcinogenesis in National Toxicology Program 2-Year Bioassays.

Published in:

Toxicologic Pathology, 2012, v. 40, n. 8, p. 1160, doi. 10.1177/0192623312446527

By:

Kadekar, Sandeep;
Peddada, Shyamal;
Silins, Ilona;
French, John E.;
Högberg, Johan;
Stenius, Ulla

Publication type:

Article

Aloe vera Non-Decolorized Whole Leaf Extract-Induced Large Intestinal Tumors in F344 Rats Share Similar Molecular Pathways with Human Sporadic Colorectal Tumors.

Published in:

Toxicologic Pathology, 2011, v. 39, n. 7, p. 1065, doi. 10.1177/0192623311422081

By:

Pandiri, Arun R.;
Sills, Robert C.;
Hoenerhoff, Mark J.;
Peddada, Shyamal D.;
Ton, Thai-Vu T.;
Hong, Hue-Hua L.;
Flake, Gordon P.;
Malarkey, David E.;
Olson, Greg R.;
Pogribny, Igor P.;
Walker, Nigel J.;
Boudreau, Mary D.

Publication type:

Article

Global Gene Profiling of Spontaneous Hepatocellular Carcinoma in B6C3F1 Mice: Similarities in the Molecular Landscape with Human Liver Cancer.

Published in:

Toxicologic Pathology, 2011, v. 39, n. 4, p. 678, doi. 10.1177/0192623311407213

By:

HOENERHOFF, MARK J.;
PANDIRI, ARUN R.;
LAHOUSSE, STEPHANIE A.;
HU-HUA HONG;
TAI-VU TON;
MASINDE, TIWANDA;
AUERBACH, SCOTT S.;
GERRISH, KEVIN;
BUSHEL, PIERRE R.;
SHOCKLEY, KEITH R.;
PEDDADA, SHYAMAL D.;
SILLS, ROBERT C.

Publication type:

Article

Comparison of NTP Historical Control Tumor Incidence Rates in Female Harlan Sprague Dawley and Fischer 344/N Rats.

Published in:

Toxicologic Pathology, 2010, v. 38, n. 5, p. 765, doi. 10.1177/0192623310373777

By:

DINSE, GREGG E.;
PEDDADA, SHYAMAL D.;
HARRIS, SHAWN F.;
ELMORE, SUSAN A.

Publication type:

Article

Points to Consider on the Statistical Analysis of Rodent Cancer Bioassay Data When Incorporating Historical Control Data.

Published in:

Toxicologic Pathology, 2009, v. 37, n. 5, p. 672, doi. 10.1177/0192623309339606

By:

Elmore, Susan A.;
Peddada, Shyamal D.

Publication type:

Article

Potential for a Global Historical Control Database for Proliferative Rodent Lesions.

Published in:

Toxicologic Pathology, 2009, v. 37, n. 5, p. 677, doi. 10.1177/0192623309336155

By:

Keenan, Charlotte;
Elmore, Susan;
Francke-Carroll, Sabine;
Kerlin, Roy;
Peddada, Shyamal;
Pletcher, John;
Rinke, Matthias;
Schmidt, Stephen Peter;
Taylor, Ian;
Wolf, Douglas C.

Publication type:

Article

Best Practices for Use of Historical Control Data of Proliferative Rodent Lesions.

Published in:

Toxicologic Pathology, 2009, v. 37, n. 5, p. 679, doi. 10.1177/0192623309336154

By:

Keenan, Charlotte;
Elmore, Susan;
Francke-Carroll, Sabine;
Kemp, Ramon;
Kerlin, Roy;
Peddada, Shyamal;
Pletcher, John;
Rinke, Matthias;
Schmidt, Stephen Peter;
Taylor, Ian;
Wolf, Douglas C.

Publication type:

Article

Epididymal Sperm Granuloma Induced by Chronic Administration of 2-Methylimidazole in B6C3F 1 Mice.

Published in:

Toxicologic Pathology, 2005, v. 33, n. 3, p. 313, doi. 10.1080/01926230590922866

By:

Tani, Yoshiro;
Foster, Paul M.;
Sills, Robert C.;
Chan, Po C.;
Peddada, Shyamal D.;
Nyska, Abraham

Publication type:

Article

2-Butoxyethanol Female-Rat Model of Hemolysis and Disseminated Thrombosis: X-Ray Characterization of Osteonecrosis and Growth-Plate Suppression.

Published in:

Toxicologic Pathology, 2005, v. 33, n. 2, p. 272, doi. 10.1080/019262390908362

By:

Lewis, Danielle N.;
Nyska, Abraham;
Johnson, Kennita;
Malarkey, David E.;
Ward, Sandy;
Streicker, Michael;
Shabat, Shay;
Peddada, Shyamal;
Nyska, Meir

Publication type:

Article

Impact of Neck Disability on Health-Related Quality of Life among Head and Neck Cancer Survivors.

Published in:

2020

By:

Nilsen, Marci L.;
Lyu, Lingyun;
Belsky, Michael A.;
Mady, Leila J.;
Zandberg, Dan P.;
Clump II, David A.;
Skinner, Heath D.;
Peddada, Shyamal Das;
George, Susan;
Johnson, Jonas T.;
Clump, David A 2nd

Publication type:

journal article

Neonatal Genome-Wide Methylation Patterns in Relation to Birth Weight in the Norwegian Mother and Child Cohort.

Published in:

American Journal of Epidemiology, 2014, v. 179, n. 7, p. 834, doi. 10.1093/aje/kwt433

By:

Engel, Stephanie M.;
Joubert, Bonnie R.;
Wu, Michael C.;
Olshan, Andrew F.;
Håberg, Siri E.;
Ueland, Per Magne;
Nystad, Wenche;
Nilsen, Roy M.;
Vollset, Stein Emil;
Peddada, Shyamal D.;
London, Stephanie J.

Publication type:

Article

ANALYSIS OF NONLINEAR REGRESSION MODELS: A CAUTIONARY NOTE.

Published in:

Dose-Response, 2005, v. 3, n. 3, p. 342, doi. 10.2203/dose-response.003.03.005

By:

Peddada, Shyamal D.;
Haseman, Joseph K.

Publication type:

Article

Analysis of microbial compositions: a review of normalization and differential abundance analysis.

Published in:

NPJ Biofilms & Microbiomes, 2020, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41522-020-00160-w

By:

Lin, Huang;
Peddada, Shyamal Das

Publication type:

Article

Relative associations of abdominal and thigh compositions with cardiometabolic diseases in African Caribbean men.

Published in:

Obesity Science & Practice, 2021, v. 7, n. 6, p. 738, doi. 10.1002/osp4.529

By:

Tilves, Curtis;
Zmuda, Joseph M.;
Kuipers, Allison L.;
Nair, Sangeeta;
Carr, John Jeffrey;
Terry, James G.;
Peddada, Shyamal;
Wheeler, Victor;
Miljkovic, Iva

Publication type:

Article

Comparison of some common ratio estimators using pitman measure of nearness.

Published in:

Communications in Statistics: Theory & Methods, 1987, v. 16, n. 7, p. 2017, doi. 10.1080/03610928708829488

By:

Lee, Carl M.S.;
Das Peddada, Shyamal

Publication type:

Article

On pitman nearness and variance of estimators.

Published in:

Communications in Statistics: Theory & Methods, 1986, v. 15, n. 10, p. 3005, doi. 10.1080/03610928608829292

By:

Das Peddada, Shyamal;
Khattree, Ravindra

Publication type:

Article

Preterm infants have distinct microbiomes not explained by mode of delivery, breastfeeding duration or antibiotic exposure.

Published in:

2018

By:

Dahl, Cecilie;
Stigum, Hein;
Valeur, Jørgen;
Iszatt, Nina;
Lenters, Virissa;
Peddada, Shyamal;
Bjørnholt, Jørgen V;
Midtvedt, Tore;
Mandal, Siddhartha;
Eggesbø, Merete

Publication type:

journal article

Linear and nonlinear correlation estimators unveil undescribed taxa interactions in microbiome data.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32243-x

By:

Lin, Huang;
Eggesbø, Merete;
Peddada, Shyamal Das

Publication type:

Article

Potential impact of the COVID‐19 pandemic on financial toxicity in cancer survivors.

Published in:

Head & Neck, 2020, v. 42, n. 6, p. 1332, doi. 10.1002/hed.26187

By:

Baddour, Khalil;
Kudrick, Lauren D.;
Neopaney, Aakriti;
Sabik, Lindsay M.;
Peddada, Shyamal D.;
Nilsen, Marci L.;
Johnson, Jonas T.;
Ferris, Robert L.;
Mady, Leila J.

Publication type:

Article

Chronic Inhalation Exposure to Antimony Trioxide Exacerbates the MAPK Signaling in Alveolar Bronchiolar Carcinomas in B6C3F1/N Mice.

Published in:

Toxicologic Pathology, 2023, v. 51, n. 1/2, p. 39, doi. 10.1177/01926233231157322

By:

Ton, Thai-Vu T.;
Hong, Hue-Hua L.;
Kovi, Ramesh C.;
Shockley, Keith R.;
Peddada, Shyamal D.;
Gerrish, Kevin E.;
Janardhan, Kyathanahalli S.;
Flake, Gordon;
Stout, Mathew D.;
Sills, Robert C.;
Pandiri, Arun R.

Publication type:

Article

Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM.

Published in:

Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01168-w

By:

Chen, Yue;
Lin, Huang;
Cole, Mariah;
Morris, Alison;
Martinson, Jeremy;
Mckay, Heather;
Mimiaga, Matthew;
Margolick, Joseph;
Fitch, Adam;
Methe, Barbara;
Srinivas, Vatsala Rangachar;
Peddada, Shyamal;
Rinaldo, Charles R.

Publication type:

Article

Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM.

Published in:

Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01168-w

By:

Chen, Yue;
Lin, Huang;
Cole, Mariah;
Morris, Alison;
Martinson, Jeremy;
Mckay, Heather;
Mimiaga, Matthew;
Margolick, Joseph;
Fitch, Adam;
Methe, Barbara;
Srinivas, Vatsala Rangachar;
Peddada, Shyamal;
Rinaldo, Charles R.

Publication type:

Article