Works by Payne, Philip

Results: 89

Community-level determinants of obesity: harnessing the power of electronic health records for retrospective data analysis.

Published in:

2014

By:

Roth, Caryn;
Foraker, Randi E;
Payne, Philip Ro;
Embi, Peter J;
Payne, Philip R O

Publication type:

journal article

Integrating Nonindividual Patient Features in Machine Learning Models of Hospital-Onset Bacteremia.

Published in:

JAMA Network Open, 2025, v. 8, n. 7, p. e2518815, doi. 10.1001/jamanetworkopen.2025.18815

By:

Vazquez-Guillamet, M. Cristina;
Zhang, Jingwen;
Bewley, Alice;
Atkinson, Andrew;
Holtz, Heidi;
Wang, Ziqian;
Brougham, Nicole;
Lu, Chenyang;
Kollef, Marin H.;
Payne, Philip;
Warren, David;
Fraser, Victoria J.

Publication type:

Article

Master of Digital Health Degree.

Published in:

2025

By:

Embí, Peter J.;
Melton, Genevieve B.;
Payne, Philip R. O.

Publication type:

Letter

Enabling Open Science for Health Research: Collaborative Informatics Environment for Learning on Health Outcomes (CIELO).

Published in:

2017

By:

Payne, Philip;
Lele, Omkar;
Johnson, Beth;
Holve, Erin

Publication type:

journal article

Enabling Online Studies of Conceptual Relationships Between Medical Terms: Developing an Efficient Web Platform.

Published in:

Journal of Medical Internet Research, 2014, v. 16, n. 10, p. 1, doi. 10.2196/medinform.3387

By:

Albin, Aaron;
Ji, Xiaonan;
Borlawsky, Tara B;
Ye, Zhan;
Lin, Simon;
Payne, Philip RO;
Huang, Kun;
Xiang, Yang

Publication type:

Article

“GEIST” RECORDING “SEELE”: THE LIFE OF THE MIND AS REPRODUCTED IN ROBERT MUSIL'S WORKS.

Published in:

Forum for Modern Language Studies, 1996, v. XXXII, n. 1, p. 70, doi. 10.1093/fmls/XXXII.1.70

By:

PAYNE, PHILIP

Publication type:

Article

Meeting the Artificial Intelligence Needs of U.S. Health Systems.

Published in:

2024

By:

Lyons, Patrick G.;
Dorr, David A.;
Melton, Genevieve B.;
Singh, Karandeep;
Payne, Philip R.O.

Publication type:

Editorial

PathFinder: a novel graph transformer model to infer multi-cell intra- and inter-cellular signaling pathways and communications.

Published in:

Frontiers in Cellular Neuroscience, 2024, p. 1, doi. 10.3389/fncel.2024.1369242

By:

Jiarui Feng;
Haoran Song;
Province, Michael;
Guangfu Li;
Payne, Philip R. O.;
Yixin Chen;
Fuhai Li

Publication type:

Article

Analyzing heterogeneity in Alzheimer disease using multimodal normative modeling on imaging‐based ATN biomarkers.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2025, v. 21, n. 4, p. 1, doi. 10.1002/alz.70143

By:

Kumar, Sayantan;
Earnest, Tom;
Yang, Braden;
Kothapalli, Deydeep;
Aschenbrenner, Andrew J.;
Hassenstab, Jason;
Xiong, Chengie;
Ances, Beau;
Morris, John;
Benzinger, Tammie L. S.;
Gordon, Brian A.;
Payne, Philip;
Sotiras, Aristeidis

Publication type:

Article

Validation of an LC-MS based approach for profiling histones in chronic lymphocytic leukemia.

Published in:

Proteomics, 2009, v. 9, n. 5, p. 1197, doi. 10.1002/pmic.200800333

By:

Su, Xiaodan;
Lucas, David M.;
Zhang, Liwen;
Xu, Hua;
Zabrouskov, Vlad;
Davis, Melanie E.;
Knapp, Amy R.;
Young, Donn C.;
Payne, Philip R. O.;
Parthun, Mark R.;
Marcucci, Guido;
Grever, Michael R.;
Byrd, John C.;
Freitas, Michael A.

Publication type:

Article

Synergy from gene expression and network mining (SynGeNet) method predicts synergistic drug combinations for diverse melanoma genomic subtypes.

Published in:

NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0085-4

By:

Regan-Fendt, Kelly E.;
Xu, Jielin;
DiVincenzo, Mallory;
Duggan, Megan C.;
Shakya, Reena;
Na, Ryejung;
Carson III, William E.;
Payne, Philip R. O.;
Li, Fuhai

Publication type:

Article

Finite-difference solution of the Poisson-Boltzmann equation: Complete elimination of self-energy.

Published in:

Journal of Computational Chemistry, 1996, v. 17, n. 11, p. 1344, doi. 10.1002/(SICI)1096-987X(199608)17:11<1344::AID-JCC7>3.0.CO;2-M

By:

Zhou, Zhongxiang;
Payne, Philip;
Vasquez, Max;
Kuhn, Nat;
Levitt, Michael

Publication type:

Article

Method for free-energy calculations using iterative techniques.

Published in:

Journal of Computational Chemistry, 1996, v. 17, n. 10, p. 1269, doi. 10.1002/(SICI)1096-987X(19960730)17:10<1269::AID-JCC7>3.0.CO;2-M

By:

Kumar, Shankar;
Payne, Philip W.;
Vásquez, Maximiliano

Publication type:

Article

A protocol to evaluate RNA sequencing normalization methods.

Published in:

BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-3247-x

By:

Abrams, Zachary B.;
Johnson, Travis S.;
Huang, Kun;
Payne, Philip R. O.;
Coombes, Kevin

Publication type:

Article

A Knowledge-Anchored Integrative Image Search and Retrieval System.

Published in:

Journal of Digital Imaging, 2009, v. 22, n. 2, p. 166, doi. 10.1007/s10278-007-9086-8

By:

Erdal, Selnur;
Catalyurek, Umit;
Payne, Philip;
Saltz, Joel;
Kamal, Jyoti;
Gurcan, Metin

Publication type:

Article

Plasma MicroRNA Levels Following Resection of Metastatic Melanoma.

Published in:

Bioinformatics & Biology Insights, 2017, n. 11, p. 1, doi. 10.1177/1177932217694837

By:

Latchana, Nicholas;
Abrams, Zachary B.;
Howard, J. Harrison;
Regan, Kelly;
Jacob, Naduparambil;
Fadda, Paolo;
Terando, Alicia;
Markowitz, Joseph;
Agnese, Doreen;
Payne, Philip;
Carson III, William E.

Publication type:

Article

Rethinking the role and impact of health information technology: informatics as an interventional discipline.

Published in:

2016

By:

Payne, Philip R. O.;
Lussier, Yves;
Foraker, Randi E.;
Embi, Peter J.

Publication type:

journal article

CytoGPS: a web-enabled karyotype analysis tool for cytogenetics.

Published in:

Bioinformatics, 2019, v. 35, n. 24, p. 5365, doi. 10.1093/bioinformatics/btz520

By:

Abrams, Zachary B;
Zhang, Lin;
Abruzzo, Lynne V;
Heerema, Nyla A;
Li, Suli;
Dillon, Tom;
Rodriguez, Ricky;
Coombes, Kevin R;
Payne, Philip R O

Publication type:

Article

Using DeepSignalingFlow to mine signaling flows interpreting mechanism of synergy of cocktails.

Published in:

NPJ Systems Biology & Applications, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41540-024-00421-w

By:

Zhang, Heming;
Chen, Yixin;
Payne, Philip;
Li, Fuhai

Publication type:

Article

Toward an artificial intelligence code of conduct for health and healthcare: implications for the biomedical informatics community.

Published in:

Journal of the American Medical Informatics Association, 2025, v. 32, n. 2, p. 408, doi. 10.1093/jamia/ocae306

By:

Payne, Philip R O;
Johnson, Kevin B;
Maddox, Thomas M;
Embi, Peter J;
Mandl, Kenneth D;
McGraw, Deven;
Saria, Suchi;
Adams, Laura

Publication type:

Article

Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence.

Published in:

Journal of the American Medical Informatics Association, 2024, v. 31, n. 8, p. 1638, doi. 10.1093/jamia/ocae130

By:

McMurry, Andrew J;
Gottlieb, Daniel I;
Miller, Timothy A;
Jones, James R;
Atreja, Ashish;
Crago, Jennifer;
Desai, Pankaja M;
Dixon, Brian E;
Garber, Matthew;
Ignatov, Vladimir;
Kirchner, Lyndsey A;
Payne, Philip R O;
Saldanha, Anil J;
Shankar, Prabhu R V;
Solad, Yauheni V;
Sprouse, Elizabeth A;
Terry, Michael;
Wilcox, Adam B;
Mandl, Kenneth D

Publication type:

Article

Real world performance of the 21st Century Cures Act population-level application programming interface.

Published in:

Journal of the American Medical Informatics Association, 2024, v. 31, n. 5, p. 1144, doi. 10.1093/jamia/ocae040

By:

Jones, James R;
Gottlieb, Daniel;
McMurry, Andrew J;
Atreja, Ashish;
Desai, Pankaja M;
Dixon, Brian E;
Payne, Philip R O;
Saldanha, Anil J;
Shankar, Prabhu;
Solad, Yauheni;
Wilcox, Adam B;
Ali, Momeena S;
Kang, Eugene;
Martin, Andrew M;
Sprouse, Elizabeth;
Taylor, David E;
Terry, Michael;
Ignatov, Vladimir;
Mandl, Kenneth D

Publication type:

Article

Electronic health record data quality assessment and tools: a systematic review.

Published in:

Journal of the American Medical Informatics Association, 2023, v. 30, n. 10, p. 1730, doi. 10.1093/jamia/ocad120

By:

Lewis, Abigail E;
Weiskopf, Nicole;
Abrams, Zachary B;
Foraker, Randi;
Lai, Albert M;
Payne, Philip R O;
Gupta, Aditi

Publication type:

Article

Multi-horizon predictive models for guiding extracorporeal resource allocation in critically ill COVID-19 patients.

Published in:

Journal of the American Medical Informatics Association, 2023, v. 30, n. 4, p. 656, doi. 10.1093/jamia/ocac256

By:

Xue, Bing;
Shah, Neel;
Yang, Hanqing;
Kannampallil, Thomas;
Payne, Philip Richard Orrin;
Lu, Chenyang;
Said, Ahmed Sameh

Publication type:

Article

Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C).

Published in:

Journal of the American Medical Informatics Association, 2022, v. 29, n. 8, p. 1350, doi. 10.1093/jamia/ocac045

By:

Thomas, Jason A;
Foraker, Randi E;
Zamstein, Noa;
Morrow, Jon D;
Payne, Philip R O;
Wilcox, Adam B;
Consortium, the N3C

Publication type:

Article

Respiratory support status from EHR data for adult population: classification, heuristics, and usage in predictive modeling.

Published in:

Journal of the American Medical Informatics Association, 2022, v. 29, n. 5, p. 813, doi. 10.1093/jamia/ocac005

By:

Yu, Sean C;
Hofford, Mackenzie R;
Lai, Albert M;
Kollef, Marin H;
Payne, Philip R O;
Michelson, Andrew P

Publication type:

Article

Conceptual considerations for using EHR-based activity logs to measure clinician burnout and its effects.

Published in:

2021

By:

Kannampallil, Thomas;
Abraham, Joanna;
Lou, Sunny S;
Payne, Philip R.O

Publication type:

journal article

A retrospective look at the predictions and recommendations from the 2009 AMIA policy meeting: did we see EHR-related clinician burnout coming?

Published in:

2021

By:

Starren, Justin B;
Tierney, William M;
Williams, Marc S;
Tang, Paul;
Weir, Charlene;
Koppel, Ross;
Payne, Philip;
Hripcsak, George;
Detmer, Don E

Publication type:

journal article

Ten principles for data sharing and commercialization.

Published in:

2021

By:

Cole, Curtis L;
Sengupta, Soumitra;
Collins), Sarah Rossetti (née;
Vawdrey, David K;
Halaas, Michael;
Maddox, Thomas M;
Gordon, Geoff;
Dave, Trushna;
Payne, Philip R O;
Williams, Andrew E;
Estrin, Deborah;
Rossetti Née Collins, Sarah

Publication type:

journal article

The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.

Published in:

2021

By:

Haendel, Melissa A;
Chute, Christopher G;
Bennett, Tellen D;
Eichmann, David A;
Guinney, Justin;
Kibbe, Warren A;
Payne, Philip R O;
Pfaff, Emily R;
Robinson, Peter N;
Saltz, Joel H;
Spratt, Heidi;
Suver, Christine;
Wilbanks, John;
Wilcox, Adam B;
Williams, Andrew E;
Wu, Chunlei;
Blacketer, Clair;
Bradford, Robert L;
Cimino, James J;
Clark, Marshall

Publication type:

journal article

Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers.

Published in:

2021

By:

Madhavan, Subha;
Bastarache, Lisa;
Brown, Jeffrey S;
Butte, Atul J;
Dorr, David A;
Embi, Peter J;
Friedman, Charles P;
Johnson, Kevin B;
Moore, Jason H;
Kohane, Isaac S;
Payne, Philip R O;
Tenenbaum, Jessica D;
Weiner, Mark G;
Wilcox, Adam B;
Ohno-Machado, Lucila

Publication type:

journal article

When past is not a prologue: Adapting informatics practice during a pandemic.

Published in:

2020

By:

Kannampallil, Thomas G;
Foraker, Randi E;
Lai, Albert M;
Woeltje, Keith F;
Payne, Philip R O

Publication type:

journal article

Language matters: precision health as a cross-cutting care, research and policy agenda.

Published in:

2020

By:

Payne, Philip R O;
Detmer, Don E

Publication type:

journal article

Using REDCap and Apple ResearchKit to integrate patient questionnaires and clinical decision support into the electronic health record to improve sexually transmitted infection testing in the emergency department.

Published in:

2020

By:

Ahmad, Fahd A;
Payne, Philip R O;
Lackey, Ian;
Komeshak, Rachel;
Kenney, Kenneth;
Magnusen, Brianna;
Metts, Christopher;
Bailey, Thomas

Publication type:

journal article

Validation of extracorporeal membrane oxygenation mortality prediction and severity of illness scores in an international COVID‐19 cohort.

Published in:

Artificial Organs, 2023, v. 47, n. 9, p. 1490, doi. 10.1111/aor.14542

By:

Shah, Neel;
Xue, Bing;
Xu, Ziqi;
Yang, Hanqing;
Marwali, Eva;
Dalton, Heidi;
Payne, Philip P. R.;
Lu, Chenyang;
Said, Ahmed S.;
Abdukahil, Sheryl Ann;
Abdulkadir, Nurul Najmee;
Absil, Lara;
Acker, Andrew;
Adrião, Diana;
Hssain, Ali Ait;
Akwani, Chika;
Al Qasim, Eman;
Alalqam, Razi;
Al‐dabbous, Tala;
Alex, Beatrice

Publication type:

Article

The National COVID Cohort Collaborative: Analyses of Original and Computationally Derived Electronic Health Record Data.

Published in:

Journal of Medical Internet Research, 2021, v. 23, n. 10, p. N.PAG, doi. 10.2196/30697

By:

Foraker, Randi;
Guo, Aixia;
Thomas, Jason;
Zamstein, Noa;
Payne, Philip RO;
Wilcox, Adam;
Collaborative, N3C

Publication type:

Article

Transcriptomics-Based Drug Repurposing Approach Identifies Novel Drugs against Sorafenib-Resistant Hepatocellular Carcinoma.

Published in:

Cancers, 2020, v. 12, n. 10, p. 2730, doi. 10.3390/cancers12102730

By:

Regan-Fendt, Kelly;
Li, Ding;
Reyes, Ryan;
Yu, Lianbo;
Wani, Nissar A.;
Hu, Peng;
Jacob, Samson T.;
Ghoshal, Kalpana;
Payne, Philip R.O.;
Motiwala, Tasneem

Publication type:

Article

Examining heterogeneity in dementia using data-driven unsupervised clustering of cognitive profiles.

Published in:

PLoS ONE, 2024, v. 19, n. 11, p. 1, doi. 10.1371/journal.pone.0313425

By:

Kumar, Sayantan;
Oh, Inez Y.;
Schindler, Suzanne E.;
Ghoshal, Nupur;
Abrams, Zachary;
Payne, Philip R. O.

Publication type:

Article

Matrix element factorization in the unitary group approach for configuration interaction calculations.

Published in:

International Journal of Quantum Chemistry, 1982, v. 22, n. 6, p. 1085, doi. 10.1002/qua.560220602

By:

Payne, Philip W.

Publication type:

Article

MD-Miner: a network-based approach for personalized drug repositioning.

Published in:

BMC Systems Biology, 2017, v. 11, p. 5, doi. 10.1186/s12918-017-0462-9

By:

Haoyang Wu;
Miller, Elise;
Wijegunawardana, Denethi;
Regan, Kelly;
Payne, Philip R. O.;
Fuhai Li

Publication type:

Article

mosGraphGen: a novel tool to generate multi-omics signaling graphs to facilitate integrative and interpretable graph AI model development.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae151

By:

Zhang, Heming;
Cao, Dekang;
Chen, Zirui;
Zhang, Xiuyuan;
Chen, Yixin;
Sessions, Cole;
Cruchaga, Carlos;
Payne, Philip;
Li, Guangfu;
Province, Michael;
Li, Fuhai

Publication type:

Article

Weakly activated core neuroinflammation pathways were identified as a central signaling mechanism contributing to the chronic neurodegeneration in Alzheimer's disease.

Published in:

Frontiers in Aging Neuroscience, 2022, v. 14, p. 1, doi. 10.3389/fnagi.2022.935279

By:

Fuhai Li;
Eteleeb, Abdallah M.;
Buchser, William;
Sohn, Christopher;
Wang, Guoqiao;
Xiong, Chengjie;
Payne, Philip R.;
McDade, Eric;
Karch, Celeste M.;
Harari, Oscar;
Cruchaga, Carlos

Publication type:

Article

MicroRNA profiling of patient plasma for clinical trials using bioinformatics and biostatistical approaches.

Published in:

OncoTargets & Therapy, 2016, v. 9, p. 5931, doi. 10.2147/OTT.S106288

By:

Markowitz, Joseph;
Abrams, Zachary;
Jacob, Naduparambil K.;
Xiaoli Zhang;
Hassani, John N.;
Latchana, Nicholas;
Lai Wei;
Regan, Kelly E.;
Brooks, Taylor R.;
Uppati, Sarvani R.;
Levine, Kala M.;
Bekaii-Saab, Tanios;
Kendra, Kari L.;
Lesinski, Gregory B.;
Howard, J. Harrison;
Olencki, Thomas;
Payne, Philip R.;
Carson III, William E.

Publication type:

Article

Community-level determinants of obesity: harnessing the power of electronic health records for retrospective data analysis.

Published in:

BMC Medical Informatics & Decision Making, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1472-6947-14-36

By:

Roth, Caryn;
Foraker, Randi E.;
Payne, Philip R. O.;
Embi, Peter J.

Publication type:

Article

People, organizational, and leadership factors impacting informatics support for clinical and translational research.

Published in:

BMC Medical Informatics & Decision Making, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1472-6947-13-20

By:

Payne, Philip R. O.;
Pressler, Taylor R.;
Sarkar, Indra Neil;
Lussier, Yves

Publication type:

Article

Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1

By:

Zhang, Jie;
Xiang, Yang;
Ding, Liya;
Keen-Circle, Kristin;
Borlawsky, Tara B.;
Ozer, Hatice Gulcin;
Jin, Ruoming;
Payne, Philip;
Huang, Kun

Publication type:

Article

Multi-dimensional discovery of biomarker and phenotype complexes.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1

By:

Payne, Philip R. O.;
Huang, Kun;
Keen-Circle, Kristin;
Kundu, Abhisek;
Zhang, Jie;
Borlawsky, Tara B.

Publication type:

Article

Chapter 1: Biomedical Knowledge Integration.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 12, p. 1, doi. 10.1371/journal.pcbi.1002826

By:

Payne, Philip R. O.

Publication type:

Article

Better together: Integrating biomedical informatics and healthcare IT operations to create a learning health system during the COVID‐19 pandemic.

Published in:

Learning Health Systems, 2022, v. 6, n. 2, p. 1, doi. 10.1002/lrh2.10309

By:

Payne, Philip R.O.;
Wilcox, Adam B.;
Embi, Peter J.;
Longhurst, Christopher A.

Publication type:

Article

Learning from data: A recurring feature on the science and practice of data‐driven learning health systems.

Published in:

Learning Health Systems, 2022, v. 6, n. 1, p. 1, doi. 10.1002/lrh2.10302

By:

Embi, Peter J.;
Payne, Philip R. O.;
Friedman, Charles P.

Publication type:

Article