Works by Pati, Amrita

Results: 93

An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1T.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0193-3

By:

Nicholson, Wayne L.;
Davis, Christina L.;
Shapiro, Nicole;
Huntemann, Marcel;
Clum, Alicia;
Reddy, T. B. K.;
Pillay, Manoj;
Markowitz, Victor;
Varghese, Neha;
Pati, Amrita;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja

Publication type:

Article

High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2

By:

Peña, Arantxa;
Busquets, Antonio;
Gomila, Margarita;
Mulet, Magdalena;
Gomila, Rosa M.;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
García-Valdés, Elena;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Lalucat, Jorge

Publication type:

Article

High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7

By:

Gehlot, Hukam Singh;
Ardley, Julie;
Tak, Nisha;
Rui Tian;
Poonar, Neetu;
Meghwal, Raju R.;
Rathi, Sonam;
Tiwari, Ravi;
Adnawani, Wan;
Seshadri, Rekha;
Reddy, T. B. K.;
Pati, Amrita;
Woyke, Tanja;
Pillay, Manoj;
Markowitz, Victor;
Baeshen, Mohammed N.;
Al-Hejin, Ahmed M.;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5

By:

Tashkandy, Nisreen;
Sabban, Sari;
Fakieh, Mohammad;
Meier-Kolthoff, Jan P.;
Sixing Huang;
Tindall, Brian J.;
Rohde, Manfred;
Baeshen, Mohammed N.;
Baeshen, Nabih A.;
Lapidus, Alla;
Copeland, Alex;
Pillay, Manoj;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Klenk, Hans-Peter

Publication type:

Article

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9

By:

Panschin, Irina;
Sixing Huang;
Meier-Kolthoff, Jan P.;
Tindall, Brian J.;
Rohde, Manfred;
Verbarg, Susanne;
Lapidus, Alla;
Han, James;
Trong, Stephan;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0148-8

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Tennessen, Kristin;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0119-5

By:

Ardley, Julie;
Tian, Rui;
O'Hara, Graham;
Seshadri, Rekha;
Reddy, T.;
Pati, Amrita;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Howieson, John;
Reeve, Wayne

Publication type:

Article

Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0115-9

By:

Tiwari, Ravi;
Howieson, John;
Yates, Ron;
Tian, Rui;
Held, Britanny;
Tapia, Roxanne;
Han, Cliff;
Seshadri, Rekha;
Reddy, T.;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0097-7

By:

Berben, Tom;
Sorokin, Dimitry;
Ivanova, Natalia;
Pati, Amrita;
Kyrpides, Nikos;
Goodwin, Lynne;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

High-quality draft genome sequence of Gracilimonas tropica CL-CB462 (DSM 19535), isolated from a Synechococcus culture.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0088-8

By:

Choi, Dong;
Ahn, Chisang;
Jang, Gwang;
Lapidus, Alla;
Han, James;
Reddy, T.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Rohde, Manfred;
Tindall, Brian;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Cho, Byung

Publication type:

Article

Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0080-3

By:

Berben, Tom;
Sorokin, Dimitry;
Ivanova, Natalia;
Pati, Amrita;
Kyrpides, Nikos;
Goodwin, Lynne;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0077-y

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0078-x

By:

Berben, Tom;
Sorokin, Dimitry;
Ivanova, Natalia;
Pati, Amrita;
Kyrpides, Nikos;
Goodwin, Lynne;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0073-2

By:

Eshraghi, Leila;
De Meyer, Sofie;
Tian, Rui;
Seshadri, Rekha;
Ivanova, Natalia;
Pati, Amrita;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos;
Tiwari, Ravi;
Yates, Ron;
Howieson, John;
Reeve, Wayne

Publication type:

Article

High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0048-3

By:

De Meyer, Sofie;
Tian, Rui;
Seshadri, Rekha;
Ivanova, Natalia;
Pati, Amrita;
Markowitz, Victor;
Woyke, Tanja;
Yates, Ron;
Howieson, John;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High quality draft genome sequence of Meganema perideroedes str. Gr1T and a proposal for its reclassification to the family Meganemaceae fam. nov.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1

By:

McIlroy, Simon J.;
Lapidus, Alla;
Thomsen, Trine R.;
Han, James;
Haynes, Matthew;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Markowitz, Victor;
Verbarg, Susanne;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Nielsen, Per H.

Publication type:

Article

High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7

By:

Ntougias, Spyridon;
Lapidus, Alla;
Copeland, Alex;
Reddy, T. B. K.;
Pati, Amrita;
Ivanova, Natalia N.;
Markowitz, Victor M.;
Klenk, Hans-Peter;
Woyke, Tanja;
Fasseas, Constantinos;
Kyrpides, Nikos C.;
Zervakis, Georgios I.

Publication type:

Article

High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0049-2

By:

Reeve, Wayne;
Sullivan, John;
Ronson, Clive;
Rui Tian;
Munk, Christine;
Han, Cliff;
Reddy, T. B. K.;
Seshadri, Rekha;
Woyke, Tanja;
Pati, Amrita;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos

Publication type:

Article

High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0036-7

By:

Yassin, Atteyet F.;
Lapidus, Alla;
Han, James;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0018-9

By:

De Meyer, Sofie E.;
Fabiano, Elena;
Tian, Rui;
Van Berkum, Peter;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia;
Pati, Amrita;
Woyke, Tanja;
Howieson, John;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Large-scale contamination of microbial isolate genomes by Illumina PhiX control.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-18

By:

Mukherjee, Supratim;
Huntemann, Marcel;
Ivanova, Natalia;
Kyrpides, Nikos C.;
Pati, Amrita

Publication type:

Article

High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4

By:

Laviad, Sivan;
Lapidus, Alla;
Han, James;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Lang, Elke;
Rohde, Manfred;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Halpern, Malka

Publication type:

Article

High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0007-z

By:

Tian, Rui;
Parker, Matthew;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia;
Pati, Amrita;
Woyke, Tanja;
Baeshen, Mohammed;
Baeshen, Nabih;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0006-0

By:

Tian, Rui;
Parker, Matthew;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia;
Pati, Amrita;
Woyke, Tanja;
Baeshen, Mohammed N.;
Baeshen, Nabih A.;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-13

By:

De Meyer, Sofie E.;
Fabiano, Elena;
Tian, Rui;
Van Berkum, Peter;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia N.;
Pati, Amrita;
Woyke, Tanja;
Howieson, John;
Kyrpides, Nikos C.;
Reeve, Wayne

Publication type:

Article

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8

By:

Mukherjee, Supratim;
Lapidus, Alla;
Shapiro, Nicole;
Jan-Fang Cheng;
Han, James;
Reddy, T. B. K.;
Huntemann, Marcel;
Ivanova, Natalia;
Mikhailova, Natalia;
Amy Chen;
Palaniappan, Krishna;
Spring, Stefan;
Göker, Markus;
Markowitz, Victor;
Woyke, Tanja;
Tindall, Brian J.;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Pati, Amrita

Publication type:

Article

Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1

By:

Gao, Xiao-Yang;
Zhi, Xiao-Yang;
Li, Hong-Wei;
Yu Zhou;
Alla Lapidus;
James Han;
Haynes, Matthew;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Tindall, Brian J.;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Wen-Jun Li

Publication type:

Article

Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 514, doi. 10.4056/sigs.4938652

By:

Reeve, Wayne;
Ballard, Ross;
Howieson, John;
Drew, Elizabeth;
Tian, Rui;
Bräu, Lambert;
Munk, Christine;
Davenport, Karen;
Chain, Patrick;
Goodwin, Lynne;
Pagani, Ioanna;
Huntemann, Marcel;
Mavrommatis, Konstantinos;
Pati, Amrita;
Markowitz, Victor;
Ivanova, Natalia;
Woyke, Tanja;
Kyrpides, Nikos

Publication type:

Article

Genome sequence of Ensifer arboris strain LMG 14919; a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 473, doi. 10.4056/sigs.4828625

By:

Reeve, Wayne;
Tian, Rui;
Bräu, Lambert;
Goodwin, Lynne;
Munk, Christine;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Liolios, Konstantinos;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavrommatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Willems, Anne

Publication type:

Article

Genome sequence of Burkholderia mimosarum strain LMG 23256, a Mimosa pigra microsymbiont from Anso, Taiwan.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 484, doi. 10.4056/sigs.4848627

By:

Willems, Anne;
Tian, Rui;
Bräu, Lambert;
Goodwin, Lynne;
Han, James;
Liolios, Konstantinos;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavrommatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271).

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 462, doi. 10.4056/sigs.4458283

By:

Nandasena, Kemanthi;
Yates, Ron;
Tiwari, Ravi;
O'Hara, Graham;
Howieson, John;
Ninawi, Mohamed;
Chertkov, Olga;
Detter, Chris;
Tapia, Roxanne;
Han, Shunseng;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Land, Miriam;
Liolios, Konstantinos;
Pati, Amrita;
Copeland, Alex;
Kyrpides, Nikos;
Ivanova, Natalia;
Goodwin, Lynne

Publication type:

Article

Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 527, doi. 10.4056/sigs.4988693

By:

Terpolilli, Jason;
Rui, Tian;
Yates, Ron;
Howieson, John;
Poole, Philip;
Munk, Christine;
Tapia, Roxanne;
Han, Cliff;
Markowitz, Victor;
Tatiparthi, Reddy;
Mavrommatis, Konstantinos;
Ivanova, Natalia;
Pati, Amrita;
Goodwin, Lynne;
Woyke, Tanja;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 551, doi. 10.4056/sigs.5008793

By:

Walker, Robert;
Watkin, Elizabeth;
Tian, Rui;
Bräu, Lambert;
O'Hara, Graham;
Goodwin, Lynne;
Han, James;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 602, doi. 10.4056/sigs.4929626

By:

Reeve, Wayne;
Ballard, Ross;
Drew, Elizabeth;
Tian, Rui;
Bräu, Lambert;
Goodwin, Lynne;
Huntemann, Marcel;
Han, James;
Tatiparthi, Reddy;
Chen, Amy;
Mavrommatis, Konstantinos;
Markowitz, Victor;
Palaniappan, Krishna;
Ivanova, Natalia;
Pati, Amrita;
Woyke, Tanja;
Kyrpides, Nikos

Publication type:

Article

Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252 isolated from marine sediment.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 687, doi. 10.4056/sigs.3828824

By:

Breider, Sven;
Teshima, Hazuki;
Petersen, Jörn;
Chertkov, Olga;
Dalingault, Hajnalka;
Chen, Amy;
Pati, Amrita;
Ivanova, Natalia;
Lapidus, Alla;
Goodwin, Lynne;
Chain, Patrick;
Detter, John;
Rohde, Manfred;
Tindall, Brian;
Kyrpides, Nikos;
Woyke, Tanja;
Simon, Meinhard;
Göker, Markus;
Klenk, Hans-Peter;
Brinkhoff, Thorsten

Publication type:

Article

High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6), a diphenol degrader with genes involved in the catechol pathway.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 783, doi. 10.4056/sigs.5088950

By:

Ntougias, Spyridon;
Lapidus, Alla;
Han, James;
Mavromatis, Konstantinos;
Pati, Amrita;
Chen, Amy;
Klenk, Hans-Peter;
Woyke, Tanja;
Fasseas, Constantinos;
Kyrpides, Nikos;
Zervakis, Georgios

Publication type:

Article

High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1020, doi. 10.4056/sigs.5449586

By:

Zhou, Yu;
Li, Rui;
Gao, Xiao-Yang;
Lapidus, Alla;
Han, James;
Haynes, Matthew;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Rohde, Manfred;
Mavromatis, Konstantinos;
Tindall, Brian;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Li, Wen-Jun

Publication type:

Article

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968

By:

Göker, Markus;
Lu, Megan;
Fiebig, Anne;
Nolan, Matt;
Lapidus, Alla;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

The complete genome sequence of Clostridium indolis DSM 755.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1089, doi. 10.4056/sigs.5281010

By:

Biddle, Amy;
Leschine, Susan;
Huntemann, Marcel;
Han, James;
Chen, Amy;
Kyrpides, Nikos;
Markowitz, Victor;
Palaniappan, Krishna;
Ivanova, Natalia;
Mikhailova, Natalia;
Ovchinnikova, Galina;
Schaumberg, Andrew;
Pati, Amrita;
Stamatis, Dimitrios;
Reddy, Tatiparthi;
Lobos, Elizabeth;
Goodwin, Lynne;
Nordberg, Henrik;
Cantor, Michael;
Hua, Susan

Publication type:

Article

Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383

By:

Göker, Markus;
Spring, Stefan;
Scheuner, Carmen;
Anderson, Iain;
Zeytun, Ahmet;
Nolan, Matt;
Lucas, Susan;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita

Publication type:

Article

Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1168, doi. 10.4056/sigs.5018795

By:

Walker, Robert;
Watkin, Elizabeth;
Tian, Rui;
Bräu, Lambert;
O'Hara, Graham;
Goodwin, Lynne;
Han, James;
Reddy, Tatiparthi;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Genome sequence of Microvirga lupini strain LUT6, a novel Lupinus alphaproteobacterial microsymbiont from Texas.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1159, doi. 10.4056/sigs.5249382

By:

Reeve, Wayne;
Parker, Matthew;
Tian, Rui;
Goodwin, Lynne;
Teshima, Hazuki;
Tapia, Roxanne;
Han, Cliff;
Han, James;
Liolios, Konstantinos;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos

Publication type:

Article

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1259, doi. 10.4056/sigs.5029016

By:

Hawley, Erik;
Piao, Hailan;
Scott, Nicole;
Malfatti, Stephanie;
Pagani, Ioanna;
Huntemann, Marcel;
Chen, Amy;
Glavina del Rio, Tijana;
Foster, Brian;
Copeland, Alex;
Jansson, Janet;
Pati, Amrita;
Tringe, Susannah;
Gilbert, Jack;
Lorenson, Thomas;
Hess, Matthias

Publication type:

Article

Genome sequence of Phaeobacter inhibens type strain (T5), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 334, doi. 10.4056/sigs.4448212

By:

Dogs, Marco;
Voget, Sonja;
Teshima, Hazuki;
Petersen, Jörn;
Davenport, Karen;
Dalingault, Hajnalka;
Chen, Amy;
Pati, Amrita;
Ivanova, Natalia;
Goodwin, Lynne;
Chain, Patrick;
Detter, John;
Standfest, Sonja;
Rohde, Manfred;
Gronow, Sabine;
Kyrpides, Nikos;
Woyke, Tanja;
Simon, Meinhard;
Klenk, Hans-Peter;
Göker, Markus

Publication type:

Article

Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 304, doi. 10.4056/sigs.4598281

By:

Tak, Nisha;
Gehlot, Hukam;
Kaushik, Muskan;
Choudhary, Sunil;
Tiwari, Ravi;
Tian, Rui;
Hill, Yvette;
Bräu, Lambert;
Goodwin, Lynne;
Han, James;
Liolios, Konstantinos;
Huntemann, Marcel;
Palaniappan, Krishna;
Pati, Amrita;
Mavromatis, Konstantinos;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 294, doi. 10.4056/sigs.4538264

By:

Reeve, Wayne;
Nandasena, Kemanthi;
Yates, Ron;
Tiwari, Ravi;
O'Hara, Graham;
Ninawi, Mohamed;
Chertkov, Olga;
Goodwin, Lynne;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Shunseng;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Land, Miriam;
Copeland, Alex;
Liolios, Konstantinos;
Pati, Amrita;
Mavromatis, Konstantinos

Publication type:

Article

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 359, doi. 10.4056/sigs.4348035

By:

Khanna, Namita;
Ghosh, Ananta;
Huntemann, Marcel;
Deshpande, Shweta;
Han, James;
Chen, Amy;
Kyrpides, Nikos;
Mavrommatis, Kostas;
Szeto, Ernest;
Markowitz, Victor;
Ivanova, Natalia;
Pagani, Ioanna;
Pati, Amrita;
Pitluck, Sam;
Nolan, Matt;
Woyke, Tanja;
Teshima, Hazuki;
Chertkov, Olga;
Daligault, Hajnalka;
Davenport, Karen

Publication type:

Article

Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 315, doi. 10.4056/sigs.4608286

By:

Terpolilli, Jason;
Hill, Yvette;
Tian, Rui;
Howieson, John;
Bräu, Lambert;
Goodwin, Lynne;
Han, James;
Liolios, Konstantinos;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Complete genome sequence of Mesorhizobium australicum type strain (WSM2073).

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 410, doi. 10.4056/sigs.4568282

By:

Reeve, Wayne;
Nandasena, Kemanthi;
Yates, Ron;
Tiwari, Ravi;
O'Hara, Graham;
Ninawi, Mohamed;
Gu, Wei;
Goodwin, Lynne;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Copeland, Alex;
Liolios, Konstantinos;
Chen, Amy;
Markowitz, Victor;
Pati, Amrita;
Mavromatis, Konstantinos;
Woyke, Tanja;
Kyrpides, Nikos;
Ivanova, Natalia

Publication type:

Article