Works matching AU Pati, Amrita

Results: 93
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    The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host.

    Published in:
    Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.735911
    By:
    • Eardly, Bertrand;
    • Meor Osman, Wan Adnawani;
    • Ardley, Julie;
    • Zandberg, Jaco;
    • Gollagher, Margaret;
    • van Berkum, Peter;
    • Elia, Patrick;
    • Marinova, Dora;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Kyrpides, Nikos;
    • Loedolff, Matthys;
    • Laird, Damian W.;
    • Reeve, Wayne
    Publication type:
    Article
    3

    Correlation of ROS1 Immunohistochemistry With ROS1 Fusion Status Determined by Fluorescence In Situ Hybridization.

    Published in:
    Archives of Pathology & Laboratory Medicine, 2020, v. 144, n. 6, p. 735, doi. 10.5858/arpa.2019-0085-OA
    By:
    • Huang, Richard S. P.;
    • Smith, Derek;
    • Le, Catherine H.;
    • Wen-Wei Liu;
    • Ordinario, Ellen;
    • Manohar, Chitra;
    • Lee, Michael;
    • Rajamani, Jaya;
    • Huan Truong;
    • Jing Li;
    • Choi, Cindy;
    • Jingchuan Li;
    • Pati, Amrita;
    • Bubendorf, Lukas;
    • Buettner, Reinhard;
    • Kerr, Keith M.;
    • Lopez-Rios, Fernando;
    • Marchetti, Antonio;
    • Marondel, Ivonne;
    • Nicholson, Andrew G.
    Publication type:
    Article
    4

    An integrated workflow for phenazine-modifying enzyme characterization.

    Published in:
    Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 7, p. 567, doi. 10.1007/s10295-018-2025-5
    By:
    • Coates, R. Cameron;
    • Bowen, Benjamin P.;
    • Oberortner, Ernst;
    • Thomashow, Linda;
    • Hadjithomas, Michalis;
    • Zhao, Zhiying;
    • Ke, Jing;
    • Silva, Leslie;
    • Louie, Katherine;
    • Wang, Gaoyan;
    • Robinson, David;
    • Tarver, Angela;
    • Hamilton, Matthew;
    • Lubbe, Andrea;
    • Feltcher, Meghan;
    • Dangl, Jeffery L.;
    • Pati, Amrita;
    • Weller, David;
    • Northen, Trent R.;
    • Cheng, Jan-Fang
    Publication type:
    Article
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    High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0270-2
    By:
    • Meor Osman, Wan Adnawani;
    • van Berkum, Peter;
    • León-Barrios, Milagros;
    • Velázquez, Encarna;
    • Elia, Patrick;
    • Rui Tian;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Pati, Amrita;
    • Markowitz, Victor;
    • Baeshen, Mohamed N.;
    • Nabeeh Baeshen, Naseebh;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    6

    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
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    High quality draft genome sequences of Pseudomonas fulva DSM 17717<sup>T</sup>, Pseudomonas parafulva DSM 17004<sup>T</sup> and Pseudomonas cremoricolorata DSM 17059<sup>T</sup> type strains.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2
    By:
    • Peña, Arantxa;
    • Busquets, Antonio;
    • Gomila, Margarita;
    • Mulet, Magdalena;
    • Gomila, Rosa M.;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • García-Valdés, Elena;
    • Göker, Markus;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Lalucat, Jorge
    Publication type:
    Article
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    High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7
    By:
    • Gehlot, Hukam Singh;
    • Ardley, Julie;
    • Tak, Nisha;
    • Rui Tian;
    • Poonar, Neetu;
    • Meghwal, Raju R.;
    • Rathi, Sonam;
    • Tiwari, Ravi;
    • Adnawani, Wan;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Pillay, Manoj;
    • Markowitz, Victor;
    • Baeshen, Mohammed N.;
    • Al-Hejin, Ahmed M.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    11

    High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
    By:
    • Tashkandy, Nisreen;
    • Sabban, Sari;
    • Fakieh, Mohammad;
    • Meier-Kolthoff, Jan P.;
    • Sixing Huang;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Baeshen, Mohammed N.;
    • Baeshen, Nabih A.;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pillay, Manoj;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
    12

    The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x
    By:
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Tripp, H.;
    • Paez-Espino, David;
    • Tennessen, Kristin;
    • Palaniappan, Krishnaveni;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Chen, I-Min;
    • Pati, Amrita;
    • Nielsen, Torben;
    • Markowitz, Victor;
    • Kyrpides, Nikos
    Publication type:
    Article
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    High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1
    By:
    • McIlroy, Simon J.;
    • Lapidus, Alla;
    • Thomsen, Trine R.;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor;
    • Verbarg, Susanne;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Nielsen, Per H.
    Publication type:
    Article
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    High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7<sup>T</sup>, and emended description of the genus Halotalea.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7
    By:
    • Ntougias, Spyridon;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor M.;
    • Klenk, Hans-Peter;
    • Woyke, Tanja;
    • Fasseas, Constantinos;
    • Kyrpides, Nikos C.;
    • Zervakis, Georgios I.
    Publication type:
    Article
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    Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 602, doi. 10.4056/sigs.4929626
    By:
    • Reeve, Wayne;
    • Ballard, Ross;
    • Drew, Elizabeth;
    • Tian, Rui;
    • Bräu, Lambert;
    • Goodwin, Lynne;
    • Huntemann, Marcel;
    • Han, James;
    • Tatiparthi, Reddy;
    • Chen, Amy;
    • Mavrommatis, Konstantinos;
    • Markowitz, Victor;
    • Palaniappan, Krishna;
    • Ivanova, Natalia;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
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    High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884<sup>T</sup>) isolated from a Chironomus sp. egg mass.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4
    By:
    • Laviad, Sivan;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Lang, Elke;
    • Rohde, Manfred;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
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    Genome sequence of Ensifer arboris strain LMG 14919; a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 473, doi. 10.4056/sigs.4828625
    By:
    • Reeve, Wayne;
    • Tian, Rui;
    • Bräu, Lambert;
    • Goodwin, Lynne;
    • Munk, Christine;
    • Detter, Chris;
    • Tapia, Roxanne;
    • Han, Cliff;
    • Liolios, Konstantinos;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Mavrommatis, Konstantinos;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Willems, Anne
    Publication type:
    Article
    34

    High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup> (DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
    By:
    • Mukherjee, Supratim;
    • Lapidus, Alla;
    • Shapiro, Nicole;
    • Jan-Fang Cheng;
    • Han, James;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Amy Chen;
    • Palaniappan, Krishna;
    • Spring, Stefan;
    • Göker, Markus;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Tindall, Brian J.;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Pati, Amrita
    Publication type:
    Article
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    Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 514, doi. 10.4056/sigs.4938652
    By:
    • Reeve, Wayne;
    • Ballard, Ross;
    • Howieson, John;
    • Drew, Elizabeth;
    • Tian, Rui;
    • Bräu, Lambert;
    • Munk, Christine;
    • Davenport, Karen;
    • Chain, Patrick;
    • Goodwin, Lynne;
    • Pagani, Ioanna;
    • Huntemann, Marcel;
    • Mavrommatis, Konstantinos;
    • Pati, Amrita;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
    37

    Draft genome sequence of Halomonas lutea strain YIM 91125<sup>T</sup> (DSM 23508<sup>T</sup>) isolated from the alkaline Lake Ebinur in Northwest China.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1
    By:
    • Gao, Xiao-Yang;
    • Zhi, Xiao-Yang;
    • Li, Hong-Wei;
    • Yu Zhou;
    • Alla Lapidus;
    • James Han;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Tindall, Brian J.;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
    38

    Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271).

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 462, doi. 10.4056/sigs.4458283
    By:
    • Nandasena, Kemanthi;
    • Yates, Ron;
    • Tiwari, Ravi;
    • O'Hara, Graham;
    • Howieson, John;
    • Ninawi, Mohamed;
    • Chertkov, Olga;
    • Detter, Chris;
    • Tapia, Roxanne;
    • Han, Shunseng;
    • Woyke, Tanja;
    • Pitluck, Sam;
    • Nolan, Matt;
    • Land, Miriam;
    • Liolios, Konstantinos;
    • Pati, Amrita;
    • Copeland, Alex;
    • Kyrpides, Nikos;
    • Ivanova, Natalia;
    • Goodwin, Lynne
    Publication type:
    Article
    39

    Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 527, doi. 10.4056/sigs.4988693
    By:
    • Terpolilli, Jason;
    • Rui, Tian;
    • Yates, Ron;
    • Howieson, John;
    • Poole, Philip;
    • Munk, Christine;
    • Tapia, Roxanne;
    • Han, Cliff;
    • Markowitz, Victor;
    • Tatiparthi, Reddy;
    • Mavrommatis, Konstantinos;
    • Ivanova, Natalia;
    • Pati, Amrita;
    • Goodwin, Lynne;
    • Woyke, Tanja;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
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    High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1020, doi. 10.4056/sigs.5449586
    By:
    • Zhou, Yu;
    • Li, Rui;
    • Gao, Xiao-Yang;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Rohde, Manfred;
    • Mavromatis, Konstantinos;
    • Tindall, Brian;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Li, Wen-Jun
    Publication type:
    Article
    42

    Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252 isolated from marine sediment.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 687, doi. 10.4056/sigs.3828824
    By:
    • Breider, Sven;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Chertkov, Olga;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Tindall, Brian;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Brinkhoff, Thorsten
    Publication type:
    Article
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    Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968
    By:
    • Göker, Markus;
    • Lu, Megan;
    • Fiebig, Anne;
    • Nolan, Matt;
    • Lapidus, Alla;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    45

    The complete genome sequence of Clostridium indolis DSM 755.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1089, doi. 10.4056/sigs.5281010
    By:
    • Biddle, Amy;
    • Leschine, Susan;
    • Huntemann, Marcel;
    • Han, James;
    • Chen, Amy;
    • Kyrpides, Nikos;
    • Markowitz, Victor;
    • Palaniappan, Krishna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Ovchinnikova, Galina;
    • Schaumberg, Andrew;
    • Pati, Amrita;
    • Stamatis, Dimitrios;
    • Reddy, Tatiparthi;
    • Lobos, Elizabeth;
    • Goodwin, Lynne;
    • Nordberg, Henrik;
    • Cantor, Michael;
    • Hua, Susan
    Publication type:
    Article
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    Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383
    By:
    • Göker, Markus;
    • Spring, Stefan;
    • Scheuner, Carmen;
    • Anderson, Iain;
    • Zeytun, Ahmet;
    • Nolan, Matt;
    • Lucas, Susan;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita
    Publication type:
    Article
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    Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1259, doi. 10.4056/sigs.5029016
    By:
    • Hawley, Erik;
    • Piao, Hailan;
    • Scott, Nicole;
    • Malfatti, Stephanie;
    • Pagani, Ioanna;
    • Huntemann, Marcel;
    • Chen, Amy;
    • Glavina del Rio, Tijana;
    • Foster, Brian;
    • Copeland, Alex;
    • Jansson, Janet;
    • Pati, Amrita;
    • Tringe, Susannah;
    • Gilbert, Jack;
    • Lorenson, Thomas;
    • Hess, Matthias
    Publication type:
    Article
    50

    Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 315, doi. 10.4056/sigs.4608286
    By:
    • Terpolilli, Jason;
    • Hill, Yvette;
    • Tian, Rui;
    • Howieson, John;
    • Bräu, Lambert;
    • Goodwin, Lynne;
    • Han, James;
    • Liolios, Konstantinos;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article