Works by Pascual-Montano, Alberto

Results: 28

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W210, doi. 10.1093/nar/gkq388

By:

Medina, Ignacio;
Carbonell, José;
Pulido, Luis;
Madeira, Sara C.;
Goetz, Stefan;
Conesa, Ana;
Tárraga, Joaquín;
Pascual-Montano, Alberto;
Nogales-Cadenas, Ruben;
Santoyo, Javier;
García, Francisco;
Marbà, Martina;
Montaner, David;
Dopazo, Joaquín

Publication type:

Article

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W228, doi. 10.1093/nar/gkq476

By:

Vazquez, Miguel;
Nogales-Cadenas, Ruben;
Arroyo, Javier;
Botías, Pedro;
García, Raul;
Carazo, Jose M.;
Tirado, Francisco;
Pascual-Montano, Alberto;
Carmona-Saez, Pedro

Publication type:

Article

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W317, doi. 10.1093/nar/gkp416

By:

Nogales-Cadenas, Ruben;
Carmona-Saez, Pedro;
Vazquez, Miguel;
Vicente, Cesar;
Yang, Xiaoyuan;
Tirado, Francisco;
Carazo, Jose María;
Pascual-Montano, Alberto

Publication type:

Article

SENT: semantic features in text.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W153, doi. 10.1093/nar/gkp392

By:

Vazquez, Miguel;
Carmona-Saez, Pedro;
Nogales-Cadenas, Ruben;
Chagoyen, Monica;
Tirado, Francisco;
Carazo, Jose Maria;
Pascual-Montano, Alberto

Publication type:

Article

CentrosomeDB: a human centrosomal proteins database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D175, doi. 10.1093/nar/gkn815

By:

Nogales-Cadenas, Rubén;
Abascal, Federico;
Díez-Pérez, Javier;
Carazo, José María;
Pascual-Montano, Alberto

Publication type:

Article

Molecular Classification of Colorectal Cancer by microRNA Profiling: Correlation with the Consensus Molecular Subtypes (CMS) and Validation of miR-30b Targets.

Published in:

Cancers, 2022, v. 14, n. 21, p. 5175, doi. 10.3390/cancers14215175

By:

Paz-Cabezas, Mateo;
Calvo-López, Tania;
Romera-Lopez, Alejandro;
Tabas-Madrid, Daniel;
Ogando, Jesus;
Fernández-Aceñero, María-Jesús;
Sastre, Javier;
Pascual-Montano, Alberto;
Mañes, Santos;
Díaz-Rubio, Eduardo;
Perez-Villamil, Beatriz

Publication type:

Article

Comparison of molecular dynamics and superfamily spaces of protein domain deformation.

Published in:

BMC Structural Biology, 2009, v. 9, p. 1, doi. 10.1186/1472-6807-9-6

By:

Velázquez-Muriel, Javier A.;
Rueda, Manuel;
Cuesta, Isabel;
Pascual-Montano, Alberto;
Orozco, Modesto;
Carazo, José-María

Publication type:

Article

Functional Enrichment Analysis of Regulatory Elements.

Published in:

Biomedicines, 2022, v. 10, n. 3, p. 590, doi. 10.3390/biomedicines10030590

By:

Garcia-Moreno, Adrian;
López-Domínguez, Raul;
Villatoro-García, Juan Antonio;
Ramirez-Mena, Alberto;
Aparicio-Puerta, Ernesto;
Hackenberg, Michael;
Pascual-Montano, Alberto;
Carmona-Saez, Pedro

Publication type:

Article

Improving miRNA-mRNA interaction predictions.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S10-S2

By:

Tabas-Madrid, Daniel;
Muniategui, Ander;
Sánchez-Caballero, Ignacio;
Jorge Martínez-Herrera, Dannys;
S Sorzano, Carlos Oscar;
Rubio, Angel;
Pascual-Montano, Alberto

Publication type:

Article

Gene expression modular analysis: an overview from the data mining perspective.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2011, v. 1, n. 5, p. 381, doi. 10.1002/widm.29

By:

Pascual-Montano, Alberto

Publication type:

Article

Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0178316

By:

Martínez, Marta;
Sorzano, Carlos O. S.;
Pascual-Montano, Alberto;
Carazo, Jose M.

Publication type:

Article

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.

Published in:

Bioinformatics, 2008, v. 24, n. 9, p. 1208, doi. 10.1093/bioinformatics/btn094

By:

Federico Abascal;
Pedro Carmona-Saez;
Jose-Maria Carazo;
Alberto Pascual-Montano

Publication type:

Article

Engene: the processing and exploratory analysis of gene expression data.

Published in:

Bioinformatics, 2003, v. 19, n. 5, p. 657, doi. 10.1093/bioinformatics/btg028

By:

García de la Nava, Jorge;
Santaella, Daniel Franco;
Alba, Jesús Cuenca;
Carazo, José María;
Trelles, Oswaldo;
Pascual-Montano, Alberto

Publication type:

Article

NMF-mGPU: non-negative matrix factorization on multi-GPU systems.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0485-4

By:

Mejía-Roa, Edgardo;
Tabas-Madrid, Daniel;
Setoain, Javier;
García, Carlos;
Tirado, Francisco;
Pascual-Montano, Alberto

Publication type:

Article

NMF-mGPU: non-negative matrix factorization on multi-GPU systems.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0485-4

By:

Mejía-Roa, Edgardo;
Tabas-Madrid, Daniel;
Setoain, Javier;
García, Carlos;
Tirado, Francisco;
Pascual-Montano, Alberto

Publication type:

Article

Moara: a Java library for extracting andnormalizing gene and protein mentions.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 157, doi. 10.1186/1471-2105-11-157

By:

Neves, Mariana L.;
Carazo, José-María;
Pascual-Montano, Alberto

Publication type:

Article

bioNMF: a versatile tool for non-negative matrix factorization in biology.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 366, doi. 10.1186/1471-2105-7-366

By:

Pascual-Montano, Alberto;
Carmona-Saez, Pedro;
Chagoyen, Monica;
Tirado, Francisco;
Carazo, Jose M;
Pascual-Marqui, Roberto D

Publication type:

Article

Proteopathogen, a protein database for studying Candida albicans - host interaction.

Published in:

Proteomics, 2009, v. 9, n. 20, p. 4664, doi. 10.1002/pmic.200900023

By:

Vialás, Vital;
Nogales-Cadenas, Rubén;
Nombela, César;
Pascual-Montano, Alberto;
Gil, Concha

Publication type:

Article

NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W193, doi. 10.1093/nar/gkv445

By:

Setoain, Javier;
Franch, Monica;
Martinez, Marta;
Tabas-Madrid, Daniel;
Sorzano, Carlos O. S.;
Bakker, Annette;
Gonzalez-Couto, Eduardo;
Elvira, Juan;
Pascual-Montano, Alberto

Publication type:

Article

CentrosomeDB: a new generation of the centrosomal proteins database for Human and Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D430, doi. 10.1093/nar/gkt1126

By:

Alves-Cruzeiro, Joao Miguel da Conceiçao;
Nogales-Cadenas, Rubén;
Pascual-Montano, Alberto Domingo

Publication type:

Article

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics.

Published in:

Nucleic Acids Research, 2012, v. 40, p. W478, doi. 10.1093/nar/gks402

By:

Tabas-Madrid, Daniel;
Nogales-Cadenas, Ruben;
Pascual-Montano, Alberto

Publication type:

Article

Sumoylated hnRNPA2B1 controls the sorting of miRNAs into exosomes through binding to specific motifs.

Published in:

Nature Communications, 2013, v. 4, n. 12, p. 2980, doi. 10.1038/ncomms3980

By:

Villarroya-Beltri, Carolina;
Gutiérrez-Vázquez, Cristina;
Sánchez-Cabo, Fátima;
Pérez-Hernández, Daniel;
Vázquez, Jesús;
Martin-Cofreces, Noa;
Martinez-Herrera, Dannys Jorge;
Pascual-Montano, Alberto;
Mittelbrunn, María;
Sánchez-Madrid, Francisco

Publication type:

Article

Notch-regulated miR-223 targets the aryl hydrocarbon receptor pathway and increases cytokine production in macrophages from rheumatoid arthritis patients.

Published in:

Scientific Reports, 2016, p. 20223, doi. 10.1038/srep20223

By:

Ogando, Jesús;
Tardáguila, Manuel;
Díaz-Alderete, Andrea;
Usategui, Alicia;
Miranda-Ramos, Vanessa;
Martínez-Herrera, Dannys Jorge;
de la Fuente, Lorena;
García-León, María J.;
Moreno, María C.;
Escudero, Sara;
Cañete, Juan D.;
Toribio, María L.;
Cases, Ildefonso;
Pascual-Montano, Alberto;
Pablos, José Luis;
Mañes, Santos

Publication type:

Article

Quantification of miRNA-mRNA Interactions.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0030766

By:

Muniategui, Ander;
Nogales-Cadenas, Rubén;
Vázquez, Miguél;
Aranguren, Xabier L.;
Agirre, Xabier;
Luttun, Aernout;
Prosper, Felipe;
Pascual-Montano, Alberto;
Rubio, Angel

Publication type:

Article

Functional Analysis beyond Enrichment: Non-Redundant Reciprocal Linkage of Genes and Biological Terms.

Published in:

PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024289

By:

Fontanillo, Celia;
Nogales-Cadenas, Ruben;
Pascual-Montano, Alberto;
Rivas, Javier De Las

Publication type:

Article

Genome‐wide signatures of flowering adaptation to climate temperature: Regional analyses in a highly diverse native range of Arabidopsis thaliana.

Published in:

Plant, Cell & Environment, 2018, v. 41, n. 8, p. 1806, doi. 10.1111/pce.13189

By:

Tabas‐Madrid, Daniel;
Méndez‐Vigo, Belén;
Arteaga, Noelia;
Marcer, Arnald;
Pascual‐Montano, Alberto;
Weigel, Detlef;
Xavier Picó, F.;
Alonso‐Blanco, Carlos

Publication type:

Article

A subpopulation of CD103<sup>pos</sup>ICOS<sup>pos</sup> Treg cells occurs at high frequency in lymphopenic mice and represents a lymph node specific differentiation stage.

Published in:

European Journal of Immunology, 2015, v. 45, n. 6, p. 1760, doi. 10.1002/eji.201445235

By:

Barthlott, Thomas;
Bosch, Angela J. T.;
Berkemeier, Caroline;
Nogales‐Cadenas, Rubén;
Jeker, Lukas T.;
Keller, Marcel P.;
Pascual‐Montano, Alberto;
Holländer, Georg A.

Publication type:

Article

Chromothripsis.

Published in:

Cell Cycle, 2013, v. 12, n. 13, p. 2016, doi. 10.4161/cc.25266

By:

Sánchez Sorzano, Carlos Oscar;
Pascual-Montano, Alberto;
Sánchez de Diego, Ainhoa;
Martínez-A., Carlos;
van Wely, Karel H. M.

Publication type:

Article