Works matching AU Pascarella, Stefano

Results: 68

Exploring the genetic diversity of the 3′ untranslated region (UTR) of Dengue virus.

Published in:

Virology Journal, 2025, v. 22, n. 1, p. 1, doi. 10.1186/s12985-025-02800-z

By:

Lo Presti, Alessandra;
Knijn, Arnold;
Palermo, Enrico;
D'Auria, Alessandra;
Quaranta, Miriana;
Pascarella, Stefano;
Frasca, Federica;
Scagnolari, Carolina

Publication type:

Article

A consensus procedure improving solvent accessibility prediction.

Published in:

Journal of Computational Chemistry, 2006, v. 27, n. 5, p. 621, doi. 10.1002/jcc.20370

By:

Gianese, Giulio;
Pascarella, Stefano

Publication type:

Article

The phytotoxin fusicoccin differently regulates 14-3-3 proteins association to mode III targets.

Published in:

IUBMB Life, 2014, v. 66, n. 1, p. 52, doi. 10.1002/iub.1239

By:

Paiardini, Alessandro;
Aducci, Patrizia;
Cervoni, Laura;
Cutruzzolà, Francesca;
Di Lucente, Cristina;
Janson, Giacomo;
Pascarella, Stefano;
Rinaldo, Serena;
Visconti, Sabina;
Camoni, Lorenzo

Publication type:

Article

A Comprehensive Computational Analysis of <italic>Mycobacterium</italic> Genomes Pinpoints the Genes Co-occurring with YczE, a Membrane Protein Coding Gene Under the Putative Control of a MocR, and Predicts its Function.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2018, v. 10, n. 1, p. 111, doi. 10.1007/s12539-017-0266-z

By:

Milano, Teresa;
Angelaccio, Sebastiana;
Tramonti, Angela;
di Salvo, Martino Luigi;
Nogues, Isabel;
Contestabile, Roberto;
Pascarella, Stefano

Publication type:

Article

Avian influenza A H5N1: are we really sure it is a spillover?

Published in:

2023

By:

Scarpa, Fabio;
Sanna, Daria;
Giovanetti, Marta;
Pascarella, Stefano;
Casu, Marco;
Ciccozzi, Massimo

Publication type:

Abstract

Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S9-S1

By:

Facchiano, Angelo;
Angelini, Claudia;
Bosotti, Roberta;
Guffanti, Alessandro;
Marabotti, Anna;
Marangoni, Roberto;
Pascarella, Stefano;
Romano, Paolo;
Zanzoni, Andreas;
Helmer-Citterich, Manuela

Publication type:

Article

Chemogenomics of pyridoxal 5′-phosphate dependent enzymes.

Published in:

Journal of Enzyme Inhibition & Medicinal Chemistry, 2013, v. 28, n. 1, p. 183, doi. 10.3109/14756366.2011.643305

By:

Singh, Ratna;
Spyrakis, Francesca;
Cozzini, Pietro;
Paiardini, Alessandro;
Pascarella, Stefano;
Mozzarelli, Andrea

Publication type:

Article

Molecular dynamics simulation unveils the conformational flexibility of the interdomain linker in the bacterial transcriptional regulator GabR from Bacillus subtilis bound to pyridoxal 5’-phosphate.

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189270

By:

Milano, Teresa;
Gulzar, Adnan;
Narzi, Daniele;
Guidoni, Leonardo;
Pascarella, Stefano

Publication type:

Article

Structural plasticity of thermophilic serine hydroxymethyltransferases.

Published in:

Proteins, 2003, v. 50, n. 1, p. 122, doi. 10.1002/prot.10268

By:

Paiardini, Alessandro;
Gianese, Giulio;
Bossa, Francesco;
Pascarella, Stefano

Publication type:

Article

Comparative structural analysis of psychrophilic and meso- and thermophilic enzymes.

Published in:

Proteins, 2002, v. 47, n. 2, p. 236, doi. 10.1002/prot.10084

By:

Gianese, Giulio;
Bossa, Francesco;
Pascarella, Stefano

Publication type:

Article

Easy Method to Predict Solvent Accessibility From Multiple Protein Sequence Alignments

Published in:

Proteins, 1998, v. 32, n. 2, p. 190

By:

Pascarella, Stefano;
De Persio, Roldano;
Bossa, Francesco;
Argos, Patrick

Publication type:

Article

Structural mimicry between SLA/LP and Rickettsia surface antigens as a driver of autoimmune hepatitis: insights from an in silico study.

Published in:

Theoretical Biology & Medical Modelling, 2013, v. 10, n. 1, p. 1, doi. 10.1186/1742-4682-10-25

By:

Paiardini, Alessandro;
Pascarella, Stefano

Publication type:

Article

Interaction of Bacillus subtilis GabR with the gabTD promoter: role of repeated sequences and effect of GABA in transcriptional activation.

Published in:

FEBS Journal, 2020, v. 287, n. 22, p. 4952, doi. 10.1111/febs.15286

By:

Nardella, Caterina;
Barile, Anna;
Salvo, Martino L.;
Milano, Teresa;
Pascarella, Stefano;
Tramonti, Angela;
Contestabile, Roberto

Publication type:

Article

The MocR‐like transcription factors: pyridoxal 5′‐phosphate‐dependent regulators of bacterial metabolism.

Published in:

FEBS Journal, 2018, v. 285, n. 21, p. 3925, doi. 10.1111/febs.14599

By:

Tramonti, Angela;
Nardella, Caterina;
Salvo, Martino L.;
Pascarella, Stefano;
Contestabile, Roberto

Publication type:

Article

Salmonella typhimurium PtsJ is a novel MocR-like transcriptional repressor involved in regulating the vitamin B<sub>6</sub> salvage pathway.

Published in:

FEBS Journal, 2017, v. 284, n. 3, p. 466, doi. 10.1111/febs.13994

By:

Tramonti, Angela;
Milano, Teresa;
Nardella, Caterina;
Salvo, Martino L.;
Pascarella, Stefano;
Contestabile, Roberto

Publication type:

Article

Shortening Epitopes to Survive: The Case of SARS-CoV-2 Lambda Variant.

Published in:

Biomolecules (2218-273X), 2021, v. 11, n. 10, p. 1494, doi. 10.3390/biom11101494

By:

Pascarella, Stefano;
Ciccozzi, Massimo;
Bianchi, Martina;
Benvenuto, Domenico;
Giovanetti, Marta;
Cauda, Roberto;
Cassone, Antonio

Publication type:

Article

Improvement in prediction of solvent accessibility by probability profiles.

Published in:

Protein Engineering, 2003, v. 16, n. 12, p. 987, doi. 10.1093/protein/gzg139

By:

Giulio Gianese;
Francesco Bossa;
Stefano Pascarella

Publication type:

Article

Structural adaptation of enzymes to low temperatures.

Published in:

Protein Engineering, 2001, v. 14, n. 3, p. 141, doi. 10.1093/protein/14.3.141

By:

Gianese, Giulio;
Argos, Patrick;
Pascarella, Stefano

Publication type:

Article

A databank (3D-ali) collecting related protein sepquences and structures.

Published in:

Protein Engineering, 1996, v. 9, n. 3, p. 249, doi. 10.1093/protein/9.3.249

By:

Pascarella, Stefano;
Milpetz, Frank;
Argos, Patrick

Publication type:

Article

SARS-CoV-2 Lineages and Sub-Lineages Circulating Worldwide: A Dynamic Overview.

Published in:

Chemotherapy (0009-3157), 2021, v. 66, n. 1/2, p. 3, doi. 10.1159/000515340

By:

Cella, Eleonora;
Benedetti, Francesca;
Fabris, Silvia;
Borsetti, Alessandra;
Pezzuto, Aldo;
Ciotti, Marco;
Pascarella, Stefano;
Ceccarelli, Giancarlo;
Zella, Davide;
Ciccozzi, Massimo;
Giovanetti, Marta

Publication type:

Article

COVID-19 Outbreak: An Overview.

Published in:

Chemotherapy (0009-3157), 2019, v. 64, n. 5-6, p. 215, doi. 10.1159/000507423

By:

Ciotti, Marco;
Angeletti, Silvia;
Minieri, Marilena;
Giovannetti, Marta;
Benvenuto, Domenico;
Pascarella, Stefano;
Sagnelli, Caterina;
Bianchi, Martina;
Bernardini, Sergio;
Ciccozzi, Massimo

Publication type:

Article

The Biological Properties of the SARS-CoV-2 Cameroon Variant Spike: An Intermediate between the Alpha and Delta Variants.

Published in:

Pathogens, 2022, v. 11, n. 7, p. N.PAG, doi. 10.3390/pathogens11070814

By:

Pascarella, Stefano;
Bianchi, Martina;
Giovanetti, Marta;
Benvenuto, Domenico;
Borsetti, Alessandra;
Cauda, Roberto;
Cassone, Antonio;
Ciccozzi, Massimo

Publication type:

Article

SARS-CoV-2 XEC: A Genome-Based Survey.

Published in:

Microorganisms, 2025, v. 13, n. 2, p. 253, doi. 10.3390/microorganisms13020253

By:

Scarpa, Fabio;
Branda, Francesco;
Ceccarelli, Giancarlo;
Romano, Chiara;
Locci, Chiara;
Pascale, Noemi;
Azzena, Ilenia;
Fiori, Pier Luigi;
Casu, Marco;
Pascarella, Stefano;
Quaranta, Miriana;
Benvenuto, Domenico;
Cauda, Roberto;
Ciccozzi, Massimo;
Sanna, Daria

Publication type:

Article

SARS-CoV-2 Recombinants: Genomic Comparison between XBF and Its Parental Lineages.

Published in:

Microorganisms, 2023, v. 11, n. 7, p. 1824, doi. 10.3390/microorganisms11071824

By:

Scarpa, Fabio;
Locci, Chiara;
Azzena, Ilenia;
Casu, Marco;
Fiori, Pier Luigi;
Ciccozzi, Alessandra;
Giovanetti, Marta;
Quaranta, Miriana;
Ceccarelli, Giancarlo;
Pascarella, Stefano;
Ciccozzi, Massimo;
Sanna, Daria

Publication type:

Article

Molecular In-Depth on the Epidemiological Expansion of SARS-CoV-2 XBB.1.5.

Published in:

Microorganisms, 2023, v. 11, n. 4, p. 912, doi. 10.3390/microorganisms11040912

By:

Scarpa, Fabio;
Azzena, Ilenia;
Locci, Chiara;
Casu, Marco;
Fiori, Pier Luigi;
Ciccozzi, Alessandra;
Angeletti, Silvia;
Imperia, Elena;
Giovanetti, Marta;
Maruotti, Antonello;
Borsetti, Alessandra;
Cauda, Roberto;
Cassone, Antonio;
Via, Allegra;
Pascarella, Stefano;
Sanna, Daria;
Ciccozzi, Massimo

Publication type:

Article

Sars-CoV-2 Envelope and Membrane Proteins: Structural Differences Linked to Virus Characteristics?

Published in:

BioMed Research International, 2020, p. 1, doi. 10.1155/2020/4389089

By:

Bianchi, Martina;
Benvenuto, Domenico;
Giovanetti, Marta;
Angeletti, Silvia;
Ciccozzi, Massimo;
Pascarella, Stefano

Publication type:

Article

Phylogeny of Culex theileri virus flavivirus in Spain, Myanmar, Portugal and Turkey.

Published in:

Asian Pacific Journal of Tropical Medicine, 2019, v. 12, n. 5, p. 216, doi. 10.4103/1995-7645.259242

By:

Cella, Eleonora;
Benvenuto, Domenico;
Donati, Daniele;
Garilli, Francesco;
Angeletti, Silvia;
Pascarella, Stefano;
Ciccozzi, Massimo

Publication type:

Article

Mayaro virus infection, the next epidemic wave after Zika? Evolutionary and structural analysis.

Published in:

Asian Pacific Journal of Tropical Medicine, 2018, v. 11, n. 3, p. 194, doi. 10.4103/1995-7645.228433

By:

Cella, Eleonora;
Giovanetti, Marta;
Milano, Teresa;
Fogolari, Marta;
Garilli, Francesco;
Alexiev, Ivailo;
Bazzardi, Riccardo;
Salemi, Marco;
Junior Alcantara, Luiz;
Angeletti, Silvia;
Pascarella, Stefano;
Ciccozzi, Massimo

Publication type:

Article

Zika Virus spreading in South America: Evolutionary analysis of emerging neutralizing resistant Phe279Ser strains.

Published in:

Asian Pacific Journal of Tropical Medicine, 2016, v. 9, n. 5, p. 445, doi. 10.1016/j.apjtm.2016.03.028

By:

Giovanetti, Marta;
Milano, Teresa;
Alcantara, Luiz Carlos;
Carcangiu, Laura;
Cella, Eleonora;
Lai, Alessia;
Lo Presti, Alessandra;
Pascarella, Stefano;
Zehender, Gianguglielmo;
Angeletti, Silvia;
Ciccozzi, Massimo

Publication type:

Article

Genetic and structural analyses reveal the low potential of the SARS‐CoV‐2 EG.5 variant.

Published in:

Journal of Medical Virology, 2023, v. 95, n. 9, p. 1, doi. 10.1002/jmv.29075

By:

Scarpa, Fabio;
Pascarella, Stefano;
Ciccozzi, Alessandra;
Giovanetti, Marta;
Azzena, Ilenia;
Locci, Chiara;
Casu, Marco;
Fiori, Pier Luigi;
Quaranta, Miriana;
Cella, Eleonora;
Sanna, Daria;
Ciccozzi, Massimo

Publication type:

Article

Epidemic history and evolution of an emerging threat of international concern, the severe acute respiratory syndrome coronavirus 2.

Published in:

Journal of Medical Virology, 2023, v. 95, n. 8, p. 1, doi. 10.1002/jmv.29012

By:

Giovanetti, Marta;
Branda, Francesco;
Cella, Eleonora;
Scarpa, Fabio;
Bazzani, Liliana;
Ciccozzi, Alessandra;
Slavov, Svetoslav Nanev;
Benvenuto, Domenico;
Sanna, Daria;
Casu, Marco;
Santos, Luciane Amorim;
Lai, Alessia;
Zehender, Giangluglielmo;
Caccuri, Francesca;
Ianni, Andrea;
Caruso, Arnaldo;
Maroutti, Antonello;
Pascarella, Stefano;
Borsetti, Alessandra;
Ciccozzi, Massimo

Publication type:

Article

Genome‐based survey of the SARS‐CoV‐2 BF.7 variant from Asia.

Published in:

Journal of Medical Virology, 2023, v. 95, n. 4, p. 1, doi. 10.1002/jmv.28714

By:

Scarpa, Fabio;
Giovanetti, Marta;
Azzena, Ilenia;
Locci, Chiara;
Casu, Marco;
Fiori, Pier Luigi;
Ciccozzi, Alessandra;
Imperia, Elena;
Bazzani, Liliana;
Borsetti, Alessandra;
Maruotti, Antonello;
Pascarella, Stefano;
Sanna, Daria;
Ciccozzi, Massimo

Publication type:

Article

Genome‐based comparison between the recombinant SARS‐CoV‐2 XBB and its parental lineages.

Published in:

Journal of Medical Virology, 2023, v. 95, n. 3, p. 1, doi. 10.1002/jmv.28625

By:

Scarpa, Fabio;
Sanna, Daria;
Azzena, Ilenia;
Casu, Marco;
Cossu, Piero;
Fiori, Pier Luigi;
Benvenuto, Domenico;
Imperia, Elena;
Giovanetti, Marta;
Ceccarelli, Giancarlo;
Cauda, Roberto;
Cassone, Antonio;
Pascarella, Stefano;
Ciccozzi, Massimo

Publication type:

Article

On the SARS‐CoV‐2 BA.2.75 variant: A genetic and structural point of view.

Published in:

2023

By:

Scarpa, Fabio;
Sanna, Daria;
Azzena, Ilenia;
Giovanetti, Marta;
Benvenuto, Domenico;
Angeletti, Silvia;
Ceccarelli, Giancarlo;
Pascarella, Stefano;
Casu, Marco;
Fiori, Pier Luigi;
Ciccozzi, Massimo

Publication type:

Abstract

The SARS‐CoV‐2 Mu variant should not be left aside: It warrants attention for its immuno‐escaping ability.

Published in:

Journal of Medical Virology, 2022, v. 94, n. 6, p. 2479, doi. 10.1002/jmv.27663

By:

Pascarella, Stefano;
Bianchi, Martina;
Giovanetti, Marta;
Narzi, Daniele;
Cauda, Roberto;
Cassone, Antonio;
Ciccozzi, Massimo

Publication type:

Article

The electrostatic potential of the Omicron variant spike is higher than in Delta and Delta‐plus variants: A hint to higher transmissibility?

Published in:

Journal of Medical Virology, 2022, v. 94, n. 4, p. 1277, doi. 10.1002/jmv.27528

By:

Pascarella, Stefano;
Ciccozzi, Massimo;
Bianchi, Martina;
Benvenuto, Domenico;
Cauda, Roberto;
Cassone, Antonio

Publication type:

Article

SARS‐CoV‐2 AY.4.2 variant circulating in Italy: Genomic preliminary insight.

Published in:

Journal of Medical Virology, 2022, v. 94, n. 4, p. 1689, doi. 10.1002/jmv.27451

By:

Angeletti, Silvia;
Giovanetti, Marta;
Fogolari, Marta;
Cella, Eleonora;
De Florio, Lucia;
Lintas, Carla;
Veralli, Roberta;
Francesconi, Maria;
Caccuri, Francesca;
De Cesaris, Marina;
De Flora, Cecilia;
Ceccarelli, Giancarlo;
Spoto, Silvia;
Caruso, Arnaldo;
Pascarella, Stefano;
Riva, Elisabetta;
Ciccozzi, Massimo

Publication type:

Article

SARS‐CoV‐2 B.1.617 Indian variants: Are electrostatic potential changes responsible for a higher transmission rate?

Published in:

Journal of Medical Virology, 2021, v. 93, n. 12, p. 6551, doi. 10.1002/jmv.27210

By:

Pascarella, Stefano;
Ciccozzi, Massimo;
Zella, Davide;
Bianchi, Martina;
Benedetti, Francesca;
Benvenuto, Domenico;
Broccolo, Francesco;
Cauda, Roberto;
Caruso, Arnaldo;
Angeletti, Silvia;
Giovanetti, Marta;
Cassone, Antonio

Publication type:

Article

Evidence for mutations in SARS‐CoV‐2 Italian isolates potentially affecting virus transmission.

Published in:

Journal of Medical Virology, 2020, v. 92, n. 10, p. 2232, doi. 10.1002/jmv.26104

By:

Benvenuto, Domenico;
Demir, Ayse Banu;
Giovanetti, Marta;
Bianchi, Martina;
Angeletti, Silvia;
Pascarella, Stefano;
Cauda, Roberto;
Ciccozzi, Massimo;
Cassone, Antonio

Publication type:

Article

Response to Ribeiro da Silva et al,"Role of nonstructural proteins in the pathogenesis of SARS‐CoV‐2".

Published in:

Journal of Medical Virology, 2020, v. 92, n. 9, p. 1430, doi. 10.1002/jmv.25863

By:

Ciccozzi, Massimo;
Benvenuto, Domenico;
Giovanetti, Marta;
Bianchi, Martina;
Pascarella, Stefano;
Angeletti, Silvia

Publication type:

Article

COVID‐2019: The role of the nsp2 and nsp3 in its pathogenesis.

Published in:

Journal of Medical Virology, 2020, v. 92, n. 6, p. 584, doi. 10.1002/jmv.25719

By:

Angeletti, Silvia;
Benvenuto, Domenico;
Bianchi, Martina;
Giovanetti, Marta;
Pascarella, Stefano;
Ciccozzi, Massimo

Publication type:

Article

Update on the Phylodynamic and Genetic Variability of Marburg Virus.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 8, p. 1721, doi. 10.3390/v15081721

By:

Scarpa, Fabio;
Bazzani, Liliana;
Giovanetti, Marta;
Ciccozzi, Alessandra;
Benedetti, Francesca;
Zella, Davide;
Sanna, Daria;
Casu, Marco;
Borsetti, Alessandra;
Cella, Eleonora;
Pascarella, Stefano;
Maruotti, Antonello;
Ciccozzi, Massimo

Publication type:

Article

Conserved water molecules in bacterial serine hydroxymethyltransferases.

Published in:

PEDS: Protein Engineering, Design & Selection, 2015, v. 28, n. 10, p. 415, doi. 10.1093/protein/gzv026

By:

Milano, Teresa;
Di Salvo, Martino Luigi;
Angelaccio, Sebastiana;
Pascarella, Stefano

Publication type:

Article

Molecular mechanism of PdxR - a transcriptional activator involved in the regulation of vitamin B<sub>6</sub> biosynthesis in the probiotic bacterium Bacillus clausii.

Published in:

FEBS Journal, 2015, v. 282, n. 15, p. 2966, doi. 10.1111/febs.13338

By:

Tramonti, Angela;
Fiascarelli, Alessio;
Milano, Teresa;
Salvo, Martino L.;
Nogués, Isabel;
Pascarella, Stefano;
Contestabile, Roberto

Publication type:

Article

Insight into the structure-function relationship of the nonheme iron halogenases involved in the biosynthesis of 4-chlorothreonine - Thr3 from Streptomyces sp. OH-5093 and Syr B2 from Pseudomonas syringae pv. syringae B301 DR.

Published in:

FEBS Journal, 2012, v. 279, n. 23, p. 4269, doi. 10.1111/febs.12017

By:

Fullone, Maria Rosaria;
Paiardini, Alessandro;
Miele, Rossella;
Marsango, Sara;
Gross, Dennis C.;
Omura, Satoshi;
Ros-Herrera, Enric;
Bonaccorsi di Patti, Maria Carmela;
Laganà, Aldo;
Pascarella, Stefano;
Grgurina, Ingeborg

Publication type:

Article

Structural adaptation to low temperatures − analysis of the subunit interface of oligomeric psychrophilic enzymes.

Published in:

FEBS Journal, 2007, v. 274, n. 17, p. 4595, doi. 10.1111/j.1742-4658.2007.05988.x

By:

Tronelli, Daniele;
Maugini, Elisa;
Bossa, Francesco;
Pascarella, Stefano

Publication type:

Article

In silicoanalysis of the adenylation domains of the freestanding enzymes belonging to the eucaryotic nonribosomal peptide synthetase-like family.

Published in:

FEBS Journal, 2005, v. 272, n. 4, p. 929, doi. 10.1111/j.1742-4658.2004.04522.x

By:

Di Vincenzo, Leonardo;
Grgurina, Ingeborg;
Pascarella, Stefano

Publication type:

Article

Conformational transitions induced by γ-amino butyrate binding in GabR, a bacterial transcriptional regulator.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-55581-1

By:

Frezzini, Mario;
Guidoni, Leonardo;
Pascarella, Stefano

Publication type:

Article

The Bayesian reconstruction and the evolutionary history of Salivirus type 1 and type 2: the worldwide spreading.

Published in:

Journal of Infection in Developing Countries, 2021, v. 15, n. 2, p. 280, doi. 10.3855/jidc.12141

By:

Angeletti, Silvia;
Benvenuto, Domenico;
Fogolari, Marta;
de Flora, Cecilia;
Ceccarelli, Giancarlo;
Maida, Ivana;
Bazzardi, Riccardo;
Spoto, Silvia;
Pascarella, Stefano;
Mugosa, Boban;
Ciccozzi, Massimo

Publication type:

Article

Integrative Genome-Based Survey of the SARS-CoV-2 Omicron XBB.1.16 Variant.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 17, p. 13573, doi. 10.3390/ijms241713573

By:

Scarpa, Fabio;
Azzena, Ilenia;
Ciccozzi, Alessandra;
Giovanetti, Marta;
Locci, Chiara;
Casu, Marco;
Fiori, Pier Luigi;
Borsetti, Alessandra;
Cella, Eleonora;
Quaranta, Miriana;
Pascarella, Stefano;
Sanna, Daria;
Ciccozzi, Massimo

Publication type:

Article