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An open letter to the scientific journals.
- Published in:
- Bioinformatics, 2002, v. 18, n. 11, p. 1409, doi. 10.1093/bioinformatics/18.11.1409
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- Publication type:
- Article
Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1275, doi. 10.4056/sigs.4851102
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- Publication type:
- Article
International Mouse Phenotyping Consortium: comprehensive knockout phenotyping underpinning the study of human disease.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. D1, p. D1038, doi. 10.1093/nar/gkac972
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- Publication type:
- Article
PDCM Finder: an open global research platform for patient-derived cancer models.
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- Nucleic Acids Research, 2023, v. 51, n. D1, p. D1360, doi. 10.1093/nar/gkac1021
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- Publication type:
- Article
Virtual Fly Brain--An interactive atlas of the Drosophila nervous system.
- Published in:
- Frontiers in Physiology, 2023, v. 14, p. 1, doi. 10.3389/fphys.2023.1076533
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- Publication type:
- Article
OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript.
- Published in:
- 2011
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- Publication type:
- Product Review
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S12
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- Publication type:
- Article
Recent advances in polygenic scores: translation, equitability, methods and FAIR tools.
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- Genome Medicine, 2024, v. 16, p. 1, doi. 10.1186/s13073-024-01304-9
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- Publication type:
- Article
Comparison, alignment, and synchronization of cell line information between CLO and EFO.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1979-z
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- Publication type:
- Article
Ten Simple Rules for Selecting a Bio-ontology.
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- PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004743
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- Publication type:
- Article
Building bridges between cellular and molecular structural biology.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.25835.001
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- Publication type:
- Article
Improving the Gene Ontology Resource to Facilitate More Informative Analysis and Interpretation of Alzheimer's Disease Data.
- Published in:
- Genes, 2018, v. 9, n. 12, p. 593, doi. 10.3390/genes9120593
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- Article
A global map of human gene expression.
- Published in:
- Nature Biotechnology, 2010, v. 28, n. 4, p. 322, doi. 10.1038/nbt0410-322
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- Publication type:
- Article
ArrayExpress service for reviewers/editors of DNA microarray papers.
- Published in:
- Nature Biotechnology, 2006, v. 24, n. 11, p. 1321, doi. 10.1038/nbt1106-1321
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- Publication type:
- Article
Wrestling with SUMO and bio-ontologies.
- Published in:
- 2006
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- Publication type:
- Letter
NCRI Informatics Initiative.
- Published in:
- 2005
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- Publication type:
- Letter
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 489, doi. 10.1186/1471-2105-7-489
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- Publication type:
- Article
Pleiotropy data resource as a primer for investigating co-morbidities/multi-morbidities and their role in disease.
- Published in:
- Mammalian Genome, 2022, v. 33, n. 1, p. 135, doi. 10.1007/s00335-021-09917-w
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- Publication type:
- Article
Accessing data from the International Mouse Phenotyping Consortium: state of the art and future plans.
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- Mammalian Genome, 2012, v. 23, n. 9/10, p. 641, doi. 10.1007/s00335-012-9428-9
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- Publication type:
- Article
A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog.
- Published in:
- Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1396-2
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- Publication type:
- Article
Minimum information about a microarray experiment (MIAME)?toward standards for microarray data.
- Published in:
- Nature Genetics, 2001, v. 29, n. 4, p. 365, doi. 10.1038/ng1201-365
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- Publication type:
- Article
Submission of Microarray Data to Public Repositories.
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- PLoS Biology, 2004, v. 2, n. 9, p. 1276, doi. 10.1371/journal.pbio.0020317
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- Publication type:
- Article
Submission of Microarray Data to Public Repositories.
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- PLoS Biology, 2004, v. 2, n. 8, p. 1, doi. 10.1371/journal.pbio.0020317
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- Publication type:
- Article
Features of a FAIR vocabulary.
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- Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00286-8
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- Publication type:
- Article
Using OWL reasoning to support the generation of novel gene sets for enrichment analysis.
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- Journal of Biomedical Semantics, 2018, v. 9, p. 1, doi. 10.1186/s13326-018-0175-z
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- Publication type:
- Article
PhenoImageShare: an image annotation and query infrastructure.
- Published in:
- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0072-2
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- Publication type:
- Article
The cellular microscopy phenotype ontology.
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- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0074-0
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- Publication type:
- Article
Webulous and the Webulous Google Add-On - a web service and application for ontology building from templates.
- Published in:
- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0055-3
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- Publication type:
- Article
Reporting phenotypes in mouse models when considering body size as a potential confounder.
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- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0050-8
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- Publication type:
- Article
Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.
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- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0051-7
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- Publication type:
- Article
The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.
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- Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 2, doi. 10.1186/2041-1480-5-25
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- Publication type:
- Article
Anatomy ontologies and potential users: bridging the gap.
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- Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 4, p. 1, doi. 10.1186/2041-1480-2-S4-S3
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- Publication type:
- Article
OpenStats: A robust and scalable software package for reproducible analysis of high-throughput phenotypic data.
- Published in:
- PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0242933
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- Publication type:
- Article
Desiderata for the development of next-generation electronic health record phenotype libraries.
- Published in:
- GigaScience, 2021, v. 10, n. 9, p. 1, doi. 10.1093/gigascience/giab059
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- Publication type:
- Article
European Variation Archive: a FAIR resource of genomic variation for all species.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. D1, p. D1216, doi. 10.1093/nar/gkab960
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- Publication type:
- Article
PDX Finder: A portal for patient-derived tumor xenograft model discovery.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D1073, doi. 10.1093/nar/gky984
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- Publication type:
- Article
BioSamples database: an updated sample metadata hub.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D1172, doi. 10.1093/nar/gky1061
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- Publication type:
- Article
The human-induced pluripotent stem cell initiative--data resources for cellular genetics.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D691, doi. 10.1093/nar/gkw928
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- Publication type:
- Article
The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D896, doi. 10.1093/nar/gkw1133
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- Publication type:
- Article
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. D1, p. D1071, doi. 10.1093/nar/gku1011
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- Publication type:
- Article
ArrayExpress update—simplifying data submissions.
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- Nucleic Acids Research, 2015, v. 43, n. D1, p. D1113, doi. 10.1093/nar/gku1057
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- Publication type:
- Article
Updates to BioSamples database at European Bioinformatics Institute.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D50, doi. 10.1093/nar/gkt1081
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- Publication type:
- Article
Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D926, doi. 10.1093/nar/gkt1270
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- Publication type:
- Article
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D1001, doi. 10.1093/nar/gkt1229
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- Publication type:
- Article
The BioSample Database (BioSD) at the European Bioinformatics Institute.
- Published in:
- Nucleic Acids Research, 2012, p. D64, doi. 10.1093/nar/gkr937
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- Publication type:
- Article
ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1002, doi. 10.1093/nar/gkq1040
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- Publication type:
- Article
The EBI RDF platform: linked open data for the life sciences.
- Published in:
- Bioinformatics, 2014, v. 30, n. 9, p. 1338, doi. 10.1093/bioinformatics/btt765
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- Publication type:
- Article
MageComet—web application for harmonizing existing large-scale experiment descriptions.
- Published in:
- Bioinformatics, 2012, v. 28, n. 10, p. 1402, doi. 10.1093/bioinformatics/bts148
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- Publication type:
- Article
Annotare—a tool for annotating high-throughput biomedical investigations and resulting data.
- Published in:
- Bioinformatics, 2010, v. 26, n. 19, p. 2470, doi. 10.1093/bioinformatics/btq462
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- Publication type:
- Article
Modeling sample variables with an Experimental Factor Ontology.
- Published in:
- Bioinformatics, 2010, v. 26, n. 8, p. 1112, doi. 10.1093/bioinformatics/btq099
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- Publication type:
- Article