Works by Parkhill, Julian

Results: 278

Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota.

Published in:

PLoS Biology, 2007, v. 5, n. 10, p. e244, doi. 10.1371/journal.pbio.0050244

By:

Stecher, Bärbel;
Robbiani, Riccardo;
Walker, Alan W.;
Westendorf, Astrid M.;
Barthel, Manja;
Kremer, Marcus;
Chaffron, Samuel;
Macpherson, Andrew J;
Buer, Jan;
Parkhill, Julian;
Dougan, Gordon;
von Mering, Christian;
Hardt, Wolf-Dietrich

Publication type:

Article

Artemis: sequence visualization and annotation.

Published in:

Bioinformatics, 2000, v. 16, n. 10, p. 944, doi. 10.1093/bioinformatics/16.10.944

By:

Rutherford, Kim;
Parkhill, Julian;
Crook, James;
Horsnell, Terry;
Rice, Peter;
Rajandream, Marie-Adèle;
Barrell, Bart

Publication type:

Article

Increased Virulence of Outer Membrane Porin Mutants of Mycobacterium abscessus.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.706207

By:

de Moura, Vinicius C. N.;
Verma, Deepshikha;
Everall, Isobel;
Brown, Karen P.;
Belardinelli, Juan M.;
Shanley, Crystal;
Stapleton, Megan;
Parkhill, Julian;
Floto, R. Andres;
Ordway, Diane J.;
Jackson, Mary

Publication type:

Article

A simple method for directional transcriptome sequencing using Illumina technology.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 22, p. e148, doi. 10.1093/nar/gkp811

By:

Croucher, Nicholas J.;
Fookes, Maria C.;
Perkins, Timothy T.;
Turner, Daniel J.;
Marguerat, Samuel B.;
Keane, Thomas;
Quail, Michael A.;
He, Miao;
Assefa, Sammey;
Bähler, Jürg;
Kingsley, Robert A.;
Parkhill, Julian;
Bentley, Stephen D.;
Dougan, Gordon;
Thomson, Nicholas R.

Publication type:

Article

GeneDB: a resource for prokaryotic and eukaryotic organisms.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d339

By:

Hertz‐Fowler, Christiane;
Peacock, Chris S.;
Wood, Valerie;
Aslett, Martin;
Kerhornou, Arnaud;
Mooney, Paul;
Tivey, Adrian;
Berriman, Matthew;
Hall, Neil;
Rutherford, Kim;
Parkhill, Julian;
Ivens, Alasdair C.;
Rajandream, Marie‐Adele;
Barrell, Bart

Publication type:

Article

Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three Salmonella enterica serovars, Typhimurium, Typhi and Paratyphi.

Published in:

Nucleic Acids Research, 2000, v. 28, n. 24, p. 4974, doi. 10.1093/nar/28.24.4974

By:

McClelland, Michael;
Florea, Liliana;
Sanderson, Ken;
Clifton, Sandra W.;
Parkhill, Julian;
Churcher, Carol;
Dougan, Gordon;
Wilson, Richard K.;
Miller, Webb

Publication type:

Article

Mutational spectra are associated with bacterial niche.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42916-w

By:

Ruis, Christopher;
Weimann, Aaron;
Tonkin-Hill, Gerry;
Pandurangan, Arun Prasad;
Matuszewska, Marta;
Murray, Gemma G. R.;
Lévesque, Roger C.;
Blundell, Tom L.;
Floto, R. Andres;
Parkhill, Julian

Publication type:

Article

Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0643-z

By:

Li-Yang Hsu;
Harris, Simon R.;
Chlebowicz, Monika A.;
Lindsay, Jodi A.;
Tse-Hsien Koh;
Krishnan, Prabha;
Thean-Yen Tan;
Pei-Yun Hon;
Grubb, Warren B.;
Bentley, Stephen D.;
Parkhill, Julian;
Peacock, Sharon J.;
Holden, Matthew T. G.

Publication type:

Article

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus.

Published in:

Genome Biology, 2012, v. 13, n. 12, p. 1

By:

Castillo-Ramírez, Santiago;
Corander, Jukka;
Marttinen, Pekka;
Aldeljawi, Mona;
Hanage, William P.;
Westh, Henrik;
Boye, Kit;
Gulay, Zeynep;
Bentley, Stephen D.;
Parkhill, Julian;
Holden, Matthew T.;
Feil, Edward J.

Publication type:

Article

The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success.

Published in:

Genome Biology, 2012, v. 13, n. 11, p. 1, doi. 10.1186/gb-2012-13-11-r103

By:

Wyres, Kelly L.;
Lambertsen, Lotte M.;
Croucher, Nicholas J.;
McGee, Lesley;
Gottberg, Anne von;
Liñares, Josefina;
Jacobs, Michael R.;
Kristinsson, Karl G.;
Beall, Bernard W.;
Klugman, Keith P.;
Parkhill, Julian;
Hakenbeck, Regine;
Bentley, Stephen D.;
Brueggemann, Angela B.

Publication type:

Article

Bacterial epidemiology and biology - lessons from genome sequencing.

Published in:

Genome Biology, 2011, v. 12, n. 10, p. 230, doi. 10.1186/gb-2011-12-10-230

By:

Parkhill, Julian;
Wren, Brendan W.

Publication type:

Article

Prospective genomic surveillance of meticillin-resistant Staphylococcus aureus (MRSA) associated with bloodstream infection, England, 1 October 2012 to 30 September 2013.

Published in:

Eurosurveillance (15607917), 2019, v. 24, n. 4, p. 42, doi. 10.2807/1560-7917.ES.2019.24.4.1800215

By:

Toleman, Michelle S.;
Reuter, Sandra;
Jamrozy, Dorota;
Wilson, Hayley J.;
Blane, Beth;
Harrison, Ewan M.;
Coll, Francesc;
Hope, Russell J.;
Kearns, Angela;
Parkhill, Julian;
Peacock, Sharon J.;
Török, M. Estée

Publication type:

Article

Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines.

Published in:

Microbial Biotechnology, 2016, v. 9, n. 2, p. 209, doi. 10.1111/1751-7915.12334

By:

Torondel, Belen;
Ensink, Jeroen H.J.;
Gundogdu, Ozan;
Ijaz, Umer Zeeshan;
Parkhill, Julian;
Abdelahi, Faraji;
Nguyen, Viet-Anh;
Sudgen, Steven;
Gibson, Walter;
Walker, Alan W.;
Quince, Christopher

Publication type:

Article

Limited Impact of Adolescent Meningococcal ACWY Vaccination on Neisseria meningitidis Serogroup W Carriage in University Students.

Published in:

2018

By:

Oldfield, Neil J.;
Green, Luke R.;
Parkhill, Julian;
Bayliss, Christopher D.;
Turner, David P. J.

Publication type:

journal article

Systematic Surveillance Detects Multiple Silent Introductions and Household Transmission of Methicillin-Resistant Staphylococcus aureus USA300 in the East of England.

Published in:

2016

By:

Toleman, Michelle S.;
Reuter, Sandra;
Coll, Francesc;
Harrison, Ewan M.;
Blane, Beth;
Brown, Nicholas M.;
Török, M. Estée;
Parkhill, Julian;
Peacock, Sharon J.

Publication type:

journal article

Genomic Analysis of Isolates From the United Kingdom 2012 Pertussis Outbreak Reveals That Vaccine Antigen Genes Are Unusually Fast Evolving.

Published in:

Journal of Infectious Diseases, 2015, v. 212, n. 2, p. 294, doi. 10.1093/infdis/jiu665

By:

Sealey, Katie L.;
Harris, Simon R.;
Fry, Norman K.;
Hurst, Laurence D.;
Gorringe, Andrew R.;
Parkhill, Julian;
Preston, Andrew

Publication type:

Article

Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a High HIV Infection Prevalence and Active Follow-up.

Published in:

Journal of Infectious Diseases, 2015, v. 211, n. 7, p. 1154, doi. 10.1093/infdis/jiu574

By:

Guerra-Assunção, José Afonso;
Houben, Rein M. G. J.;
Crampin, Amelia C.;
Mzembe, Themba;
Mallard, Kim;
Coll, Francesc;
Khan, Palwasha;
Banda, Louis;
Chiwaya, Arthur;
Pereira, Rui P. A.;
McNerney, Ruth;
Harris, David;
Parkhill, Julian;
Clark, Taane G.;
Glynn, Judith R.

Publication type:

Article

Pneumococcal Capsular Switching: A Historical Perspective.

Published in:

Journal of Infectious Diseases, 2013, v. 207, n. 3, p. 439, doi. 10.1093/infdis/jis703

By:

Wyres, Kelly L.;
Lambertsen, Lotte M.;
Croucher, Nicholas J.;
McGee, Lesley;
von Gottberg, Anne;
Liñares, Josefina;
Jacobs, Michael R.;
Kristinsson, Karl G.;
Beall, Bernard W.;
Klugman, Keith P.;
Parkhill, Julian;
Hakenbeck, Regine;
Bentley, Stephen D.;
Brueggemann, Angela B.

Publication type:

Article

Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.

Published in:

BMC Microbiology, 2016, v. 16, p. 1, doi. 10.1186/s12866-016-0891-4

By:

Wagner, Josef;
Coupland, Paul;
Browne, Hilary P.;
Lawley, Trevor D.;
Francis, Suzanna C.;
Julian Parkhill

Publication type:

Article

Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial.

Published in:

PLoS Pathogens, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.ppat.1010075

By:

van Tonder, Andries J.;
Thornton, Mark J.;
Conlan, Andrew J. K.;
Jolley, Keith A.;
Goolding, Lee;
Mitchell, Andrew P.;
Dale, James;
Palkopoulou, Eleftheria;
Hogarth, Philip J.;
Hewinson, R. Glyn;
Wood, James L. N.;
Parkhill, Julian

Publication type:

Article

What has high-throughput sequencing ever done for us?

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 10, p. 664, doi. 10.1038/nrmicro3112

By:

Parkhill, Julian

Publication type:

Article

Whole Genome Sequence Analysis of a Large Isoniazid-Resistant Tuberculosis Outbreak in London: A Retrospective Observational Study.

Published in:

2016

By:

Casali, Nicola;
Broda, Agnieszka;
Harris, Simon R.;
Parkhill, Julian;
Brown, Timothy;
Drobniewski, Francis

Publication type:

journal article

BamView: visualizing and interpretation of next-generation sequencing read alignments.

Published in:

Briefings in Bioinformatics, 2013, v. 14, n. 2, p. 203, doi. 10.1093/bib/bbr073

By:

Carver, Tim;
Harris, Simon R.;
Otto, Thomas D.;
Berriman, Matthew;
Parkhill, Julian;
McQuillan, Jacqueline A.

Publication type:

Article

An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-89881-2

By:

O'Sullivan, Denise M.;
Doyle, Ronan M.;
Temisak, Sasithon;
Redshaw, Nicholas;
Whale, Alexandra S.;
Logan, Grace;
Huang, Jiabin;
Fischer, Nicole;
Amos, Gregory C. A.;
Preston, Mark D.;
Marchesi, Julian R.;
Wagner, Josef;
Parkhill, Julian;
Motro, Yair;
Denise, Hubert;
Finn, Robert D.;
Harris, Kathryn A.;
Kay, Gemma L.;
O'Grady, Justin;
Ransom-Jones, Emma

Publication type:

Article

Increasing incidence of group B streptococcus neonatal infections in the Netherlands is associated with clonal expansion of CC17 and CC23.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-66214-3

By:

Jamrozy, Dorota;
Bijlsma, Merijn W.;
de Goffau, Marcus C.;
van de Beek, Diederik;
Kuijpers, Taco W.;
Parkhill, Julian;
van der Ende, Arie;
Bentley, Stephen D.

Publication type:

Article

The First population structure and comparative genomics analysis of Mycobacterium africanum strains from Ghana reveals higher diversity of Lineage 5.

Published in:

International Journal of Mycobacteriology, 2016, v. 5, p. S80, doi. 10.1016/j.ijmyco.2016.09.051

By:

Otchere, Isaac D.;
Harris, Simon R.;
Busso, Sanches L.;
Asante-Poku, Adwoa;
Osei-Wusu, Stephen;
Koram, Kwadwo;
Parkhill, Julian;
Gagneux, Sebastien;
Yeboah-Manu, Dorothy

Publication type:

Article

Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel mecA homologue mecC.

Published in:

EMBO Molecular Medicine, 2013, v. 5, n. 4, p. 509, doi. 10.1002/emmm.201202413

By:

Harrison, Ewan M.;
Paterson, Gavin K.;
Holden, Matthew T.G.;
Larsen, Jesper;
Stegger, Marc;
Larsen, Anders Rhod;
Petersen, Andreas;
Skov, Robert L.;
Christensen, Judit Marta;
Bak Zeuthen, Anne;
Heltberg, Ole;
Harris, Simon R.;
Zadoks, Ruth N.;
Parkhill, Julian;
Peacock, Sharon J.;
Holmes, Mark A.

Publication type:

Article

Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex.

Published in:

Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-020-00726-5

By:

Merker, Matthias;
Kohl, Thomas A.;
Barilar, Ivan;
Andres, Sönke;
Fowler, Philip W.;
Chryssanthou, Erja;
Ängeby, Kristian;
Jureen, Pontus;
Moradigaravand, Danesh;
Parkhill, Julian;
Peacock, Sharon J.;
Schön, Thomas;
Maurer, Florian P.;
Walker, Timothy;
Köser, Claudio;
Niemann, Stefan

Publication type:

Article

Loss of Genomic Diversity in a Neisseria meningitidis Clone Through a Colonization Bottleneck.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 8, p. 2102, doi. 10.1093/gbe/evy152

By:

Lamelas, Araceli;
Hamid, Abdul-Wahab M;
Dangy, Jean-Pierre;
Hauser, Julia;
Jud, Maja;
Röltgen, Katharina;
Hodgson, Abraham;
Junghanss, Thomas;
Harris, Simon R;
Parkhill, Julian

Publication type:

Article

Population Structure of Multidrug-Resistant Klebsiella oxytoca within Hospitals across the United Kingdom and Ireland Identifies Sharing of Virulence and Resistance Genes with K. pneumoniae.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 3, p. 574, doi. 10.1093/gbe/evx019

By:

Moradigaravand, Danesh;
Martin, Veronique;
Peacock, Sharon J.;
Parkhill, Julian

Publication type:

Article

Genome Evolution and Plasticity of Serratia marcescens, an Important Multidrug-Resistant Nosocomial Pathogen.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 8, p. 2096, doi. 10.1093/gbe/evu160

By:

Iguchi, Atsushi;
Nagaya, Yutaka;
Pradel, Elizabeth;
Ooka, Tadasuke;
Ogura, Yoshitoshi;
Katsura, Keisuke;
Kurokawa, Ken;
Oshima, Kenshiro;
Hattori, Masahira;
Parkhill, Julian;
Sebaihia, Mohamed;
Coulthurst, Sarah J.;
Gotoh, Naomasa;
Thomson, Nicholas R.;
Ewbank, Jonathan J.;
Hayashi, Tetsuya

Publication type:

Article

Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1589, doi. 10.1093/gbe/evu120

By:

Croucher, Nicholas J.;
Chewapreecha, Claire;
Hanage, William P.;
Harris, Simon R.;
McGee, Lesley;
van der Linden, Mark;
Song, Jae-Hoon;
Ko, Kwan Soo;
de Lencastre, Herminia;
Turner, Claudia;
Yang, Fan;
Sá-Leão, Raquel;
Beall, Bernard;
Klugman, Keith P.;
Parkhill, Julian;
Turner, Paul;
Bentley, Stephen D.

Publication type:

Article

A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin.

Published in:

Genome Biology & Evolution, 2011, v. 3, p. 881, doi. 10.1093/gbe/evr078

By:

Holt, Deborah C.;
Holden, Matthew T.G.;
Tong, Steven Y.C.;
Castillo-Ramirez, Santiago;
Clarke, Louise;
Quail, Michael A.;
Currie, Bart J.;
Parkhill, Julian;
Bentley, Stephen D.;
Feil, Edward J.;
Giffard, Philip M.

Publication type:

Article

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2777-0

By:

Mihai Pop;
Paulson, Joseph N.;
Chakraborty, Subhra;
Astrovskaya, Irina;
Lindsay, Brianna R.;
Shan Li;
Corrada Bravo, Héctor;
Harro, Clayton;
Parkhill, Julian;
Walker, Alan W.;
Walker, Richard I.;
Sack, David A.;
Stine, O. Colin

Publication type:

Article

The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2426-7

By:

Warne, Ben;
Harkins, Catriona P.;
Harris, Simon R.;
Vatsiou, Alexandra;
Stanley-Wall, Nicola;
Parkhill, Julian;
Peacock, Sharon J.;
Palmer, Tracy;
Holden, Matthew T. G.

Publication type:

Article

Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-015-2234-5

By:

Bryant, Josephine M.;
Thibault, Virginie C.;
Smith, David G. E.;
McLuckie, Joyce;
Heron, Ian;
Sevilla, Iker A.;
Biet, Franck;
Harris, Simon R.;
Maskell, Duncan J.;
Bentley, Stephen D.;
Parkhill, Julian;
Stevenson, Karen

Publication type:

Article

Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1669-z

By:

Hjerde, Erik;
Karlsen, Christian;
Sørum, Henning;
Parkhill, Julian;
Willassen, Nils Peder;
Thomson, Nicholas R.

Publication type:

Article

Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 447, doi. 10.1186/s12864-015-1669-z

By:

Hjerde, Erik;
Karlsen, Christian;
Sørum, Henning;
Parkhill, Julian;
Willassen, Nils Peder;
Thomson, Nicholas R.

Publication type:

Article

Single-molecule sequencing reveals the molecular basis of multidrug-resistance in ST772 methicillin-resistant Staphylococcus aureus.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1599-9

By:

Steinig, Eike J.;
Andersson, Patiyan;
Harris, Simon R.;
Sarovich, Derek S.;
Manoharan, Anand;
Coupland, Paul;
Holden, Matthew T. G.;
Parkhill, Julian;
Bentley, Stephen D.;
Robinson, D. Ashley;
Tong, Steven Y. C.

Publication type:

Article

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3567, doi. 10.1186/1471-2164-15-1179

By:

Howell, Kate J.;
Weinert, Lucy A.;
Chaudhuri, Roy R.;
Shi-Lu Luan;
Peters, Sarah E.;
Corander, Jukka;
Harris, David;
Angen, Øystein;
Aragon, Virginia;
Bensaid, Albert;
Williamson, Susanna M.;
Parkhill, Julian;
Langford, Paul R.;
Rycroft, Andrew N.;
Wren, Brendan W.;
Holden, Matthew T. G.;
Tucker, Alexander W.;
Maskell, Duncan J.

Publication type:

Article

A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 348, doi. 10.1186/1471-2164-15-1138

By:

Bratcher, Holly B.;
Corton, Craig;
Jolley, Keith A.;
Parkhill, Julian;
Maiden, Martin C. J.

Publication type:

Article

Comparative genome analysis of Wolbachia strain wAu.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 928, doi. 10.1186/1471-2164-15-928

By:

Sutton, Elizabeth R.;
Harris, Simon R.;
Parkhill, Julian;
Sinkins, Steven P.

Publication type:

Article

Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-500

By:

Wyres, Kelly L.;
van Tonder, Andries;
Lambertsen, Lotte M.;
Hakenbeck, Regine;
Parkhill, Julian;
Bentley, Stephen D.;
Brueggemann, Angela B.

Publication type:

Article

Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 545, doi. 10.1186/1471-2164-13-545

By:

Jihye Park;
Ying Zhang;
Buboltz, Anne M.;
Xuqing Zhang;
Schuster, Stephan C.;
Umesh Ahuja;
Minghsun Liu;
Miller, Jeff F.;
Sebaihia, Mohammed;
Bentley, Stephen D.;
Parkhill, Julian;
Harvill, Eric T.

Publication type:

Article

Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 454, doi. 10.1186/1471-2164-13-454

By:

Mappley, Luke J.;
Black, Michael L.;
AbuOun, Manal;
Darby, Alistair C.;
Woodward, Martin J.;
Parkhill, Julian;
Turner, A. Keith;
Bellgard, Matthew I.;
La, Tom;
Phillips, Nyree D.;
La Ragione, Roberto M.;
Hampson, David J.

Publication type:

Article

Modulation of the human gut microbiota by dietary fibres occurs at the species level.

Published in:

BMC Biology, 2016, v. 14, p. 1, doi. 10.1186/s12915-015-0224-3

By:

Chung, Wing Sun Faith;
Walker, Alan W.;
Louis, Petra;
Parkhill, Julian;
Vermeiren, Joan;
Bosscher, Douwina;
Duncan, Sylvia H.;
Flint, Harry J.

Publication type:

Article

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

Published in:

BMC Biology, 2014, v. 12, n. 1, p. 87, doi. 10.1186/s12915-014-0087-z

By:

Salter, Susannah J;
Cox, Michael J;
Turek, Elena M;
Calus, Szymon T;
Cookson, William O;
Moffatt, Miriam F;
Turner, Paul;
Parkhill, Julian;
Loman, Nicholas J;
Walker, Alan W

Publication type:

Article

Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone.

Published in:

BMC Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1186/1741-7007-12-49

By:

Croucher, Nicholas J.;
Hanage, William P.;
Harris, Simon R.;
McGee, Lesley;
van der Linden, Mark;
de Lencastre, Herminia;
Sá-Leão, Raquel;
Jae-Hoon Song;
Kwan Soo Ko;
Beall, Bernard;
Klugman, Keith P.;
Parkhill, Julian;
Tomasz, Alexander;
Kristinsson, Karl G.;
Bentley, Stephen D.

Publication type:

Article

Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group.

Published in:

BMC Biology, 2007, v. 5, p. 1, doi. 10.1186/1741-7007-5-39

By:

Walker, Thomas;
Klasson, Lisa;
Sebaihia, Mohammed;
Sanders, Mandy J.;
Thomson, Nicholas R.;
Parkhill, Julian;
Sinkins, Steven P.

Publication type:

Article

Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model.

Published in:

2014

By:

van Tonder, Andries J.;
Mistry, Shilan;
Bray, James E.;
Hill, Dorothea M. C.;
Cody, Alison J.;
Farmer, Chris L.;
Klugman, Keith P.;
von Gottberg, Anne;
Bentley, Stephen D.;
Parkhill, Julian;
Jolley, Keith A.;
Maiden, Martin C. J.;
Brueggemann, Angela B.

Publication type:

Case Study