Works by Park, Jeongbin

Results: 33

From spots to cells: Cell segmentation in spatial transcriptomics with BOMS.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0311458

By:

Kamboj, Ocima;
Park, Jeongbin;
Stegle, Oliver;
Hamprecht, Fred A.

Publication type:

Article

Cas-analyzer: an online tool for assessing genome editing results using NGS data.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 286, doi. 10.1093/bioinformatics/btw561

By:

Jeongbin Park;
Kayeong Lim;
Jin-Soo Kim;
Sangsu Bae

Publication type:

Article

Cas-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cas9.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2017, doi. 10.1093/bioinformatics/btw103

By:

Jeongbin Park;
Jin-Soo Kim;
Sangsu Bae

Publication type:

Article

Cas-Designer: a web-based tool for choice of CRISPR-Cas9 target sites.

Published in:

Bioinformatics, 2015, v. 31, n. 24, p. 4014, doi. 10.1093/bioinformatics/btv537

By:

Jeongbin Park;
Sangsu Bae;
Jin-Soo Kim

Publication type:

Article

Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases.

Published in:

Bioinformatics, 2014, v. 30, n. 10, p. 1473, doi. 10.1093/bioinformatics/btu048

By:

Bae, Sangsu;
Park, Jeongbin;
Kim, Jin-Soo

Publication type:

Article

Discovery of potential imaging and therapeutic targets for severe inflammation in COVID-19 patients.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-93743-2

By:

Lee, Hyunjong;
Park, Jeongbin;
Im, Hyung-Jun;
Na, Kwon Joong;
Choi, Hongyoon

Publication type:

Article

A Spatial Transcriptomics Based Label‐Free Method for Assessment of Human Stem Cell Distribution and Effects in a Mouse Model of Lung Fibrosis.

Published in:

Advanced Therapeutics, 2024, v. 7, n. 4, p. 1, doi. 10.1002/adtp.202300283

By:

Park, Jeongbin;
Lee, Dongjoo;
Lee, Jae Eun;
Lee, Daeseung;
Song, In Ho;
Park, Hyun Soo;
Choi, Hongyoon;
Im, Hyung‐Jun

Publication type:

Article

CFD-based design optimization of ducted hydrokinetic turbines.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-43724-4

By:

Park, Jeongbin;
Knight, Bradford G.;
Liao, Yingqian;
Mangano, Marco;
Pacini, Bernardo;
Maki, Kevin J.;
Martins, Joaquim R. R. A.;
Sun, Jing;
Pan, Yulin

Publication type:

Article

Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-36638-8

By:

Zhang, Yun;
Miller, Jeremy A.;
Park, Jeongbin;
Lelieveldt, Boudewijn P.;
Long, Brian;
Abdelaal, Tamim;
Aevermann, Brian D.;
Biancalani, Tommaso;
Comiter, Charles;
Dzyubachyk, Oleh;
Eggermont, Jeroen;
Langseth, Christoffer Mattsson;
Petukhov, Viktor;
Scalia, Gabriele;
Vaishnav, Eeshit Dhaval;
Zhao, Yilin;
Lein, Ed S.;
Scheuermann, Richard H.

Publication type:

Article

READRetro: natural product biosynthesis predicting with retrieval‐augmented dual‐view retrosynthesis.

Published in:

New Phytologist, 2024, v. 243, n. 6, p. 2512, doi. 10.1111/nph.20012

By:

Kim, Taein;
Lee, Seul;
Kwak, Yejin;
Choi, Min‐Soo;
Park, Jeongbin;
Hwang, Sung Ju;
Kim, Sang‐Gyu

Publication type:

Article

Screening drug effects in patient-derived cancer cells links organoid responses to genome alterations.

Published in:

Molecular Systems Biology, 2017, v. 13, n. 11, p. 1, doi. 10.15252/msb.20177697

By:

Jabs, Julia;
Zickgraf, Franziska M;
Park, Jeongbin;
Wagner, Steve;
Jiang, Xiaoqi;
Jechow, Katharina;
Kleinheinz, Kortine;
Toprak, Umut H;
Schneider, Marc A;
Meister, Michael;
Spaich, Saskia;
Sütterlin, Marc;
Schlesner, Matthias;
Trumpp, Andreas;
Sprick, Martin;
Eils, Roland;
Conrad, Christian

Publication type:

Article

Methylation profiling identifies two subclasses of squamous cell carcinoma related to distinct cells of origin.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03025-1

By:

Rodríguez-Paredes, Manuel;
Bormann, Felix;
Raddatz, Günter;
Gutekunst, Julian;
Lucena-Porcel, Carlota;
Köhler, Florian;
Wurzera, Elisabeth;
Schmidt, Katrin;
Gallinat, Stefan;
Wenck, Horst;
Röwert-Huber, Joachim;
Denisova, Evgeniya;
Feuerbach, Lars;
Park, Jeongbin;
Brors, Benedikt;
Herpel, Esther;
Nindl, Ingo;
Hofmann, Thomas G.;
Winnefeld, Marc;
Lyko, Frank

Publication type:

Article

CWAS-Plus: estimating category-wide association of rare noncoding variation from whole-genome sequencing data with cell-type-specific functional data.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 4, p. 1, doi. 10.1093/bib/bbae323

By:

Kim, Yujin;
Jeong, Minwoo;
Koh, In Gyeong;
Kim, Chanhee;
Lee, Hyeji;
Kim, Jae Hyun;
Yurko, Ronald;
Kim, Il Bin;
Park, Jeongbin;
Werling, Donna M;
Sanders, Stephan J;
An, Joon-Yong

Publication type:

Article

RBM39 shapes innate immunity by controlling the expression of key factors of the interferon response.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1568056

By:

Li, Teng-Feng;
Rothhaar, Paul;
Lang, Arthur;
Grünvogel, Oliver;
Colasanti, Ombretta;
Ugarte, Santa Mariela Olivera;
Traut, Jannik;
Piras, Antonio;
Acosta-Rivero, Nelson;
Gonçalves Magalhães, Vladimir;
Springer, Emely;
Betz, Andreas;
Huang, Hao-En;
Park, Jeongbin;
Qiu, Ruiyue;
Gnouamozi, Gnimah Eva;
Mehnert, Ann-Kathrin;
Thi, Viet Loan Dao;
Urban, Stephan;
Muckenthaler, Martina

Publication type:

Article

Cell segmentation-free inference of cell types from in situ transcriptomics data.

Published in:

Nature Communications, 2021, v. 12, p. 1, doi. 10.1038/s41467-021-23807-4

By:

Park, Jeongbin;
Choi, Wonyl;
Tiesmeyer, Sebastian;
Long, Brian;
Borm, Lars E.;
Garren, Emma;
Nguyen, Thuc Nghi;
Tasic, Bosiljka;
Codeluppi, Simone;
Graf, Tobias;
Schlesner, Matthias;
Stegle, Oliver;
Eils, Roland;
Ishaque, Naveed

Publication type:

Article

Author Correction: Cell segmentation-free inference of cell types from in situ transcriptomics data.

Published in:

2021

By:

Park, Jeongbin;
Choi, Wonyl;
Tiesmeyer, Sebastian;
Long, Brian;
Borm, Lars E.;
Garren, Emma;
Nguyen, Thuc Nghi;
Tasic, Bosiljka;
Codeluppi, Simone;
Graf, Tobias;
Schlesner, Matthias;
Stegle, Oliver;
Eils, Roland;
Ishaque, Naveed

Publication type:

Correction Notice

Cell segmentation-free inference of cell types from in situ transcriptomics data.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23807-4

By:

Park, Jeongbin;
Choi, Wonyl;
Tiesmeyer, Sebastian;
Long, Brian;
Borm, Lars E.;
Garren, Emma;
Nguyen, Thuc Nghi;
Tasic, Bosiljka;
Codeluppi, Simone;
Graf, Tobias;
Schlesner, Matthias;
Stegle, Oliver;
Eils, Roland;
Ishaque, Naveed

Publication type:

Article

Cell segmentation-free inference of cell types from in situ transcriptomics data.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23807-4

By:

Park, Jeongbin;
Choi, Wonyl;
Tiesmeyer, Sebastian;
Long, Brian;
Borm, Lars E.;
Garren, Emma;
Nguyen, Thuc Nghi;
Tasic, Bosiljka;
Codeluppi, Simone;
Graf, Tobias;
Schlesner, Matthias;
Stegle, Oliver;
Eils, Roland;
Ishaque, Naveed

Publication type:

Article

Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal Cancer.

Published in:

Cancers, 2021, v. 13, n. 5, p. 1097, doi. 10.3390/cancers13051097

By:

Zowada, Martina K.;
Tirier, Stephan M.;
Dieter, Sebastian M.;
Krieger, Teresa G.;
Oberlack, Ava;
Chua, Robert Lorenz;
Huerta, Mario;
Ten, Foo Wei;
Laaber, Karin;
Park, Jeongbin;
Jechow, Katharina;
Müller, Torsten;
Kalxdorf, Mathias;
Kriegsmann, Mark;
Kriegsmann, Katharina;
Herbst, Friederike;
Krijgsveld, Jeroen;
Schneider, Martin;
Eils, Roland;
Glimm, Hanno

Publication type:

Article

Dual-mode action of scalable, high-quality engineered stem cell-derived SIRPα-extracellular vesicles for treating acute liver failure.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57133-w

By:

Kim, Seohyun;
Kim, Yoon Kyoung;
Kim, Seonghyun;
Choi, Yong-Soon;
Lee, Inkyu;
Joo, Hyemin;
Kim, Jaehyun;
Kwon, Minjeong;
Park, Seryoung;
Jo, Min Kyoung;
Choi, Yoonjeong;
D'Souza, Theresa;
Jung, Jae Woong;
Zakhem, Elie;
Lenzini, Stephen;
Woo, Jiwan;
Choi, Hongyoon;
Park, Jeongbin;
Park, Seung-Yoon;
Kim, Gi Beom

Publication type:

Article

Smaller pineal gland is associated with rapid eye movement sleep behavior disorder in Alzheimer's disease.

Published in:

Alzheimer's Research & Therapy, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13195-020-00725-z

By:

Park, Jeongbin;
Suh, Seung Wan;
Kim, Grace Eun;
Lee, Subin;
Kim, Jun Sung;
Kim, Hye Sung;
Byun, Seonjeong;
Bae, Jong Bin;
Kim, Jae Hyoung;
Kim, Sang Eun;
Han, Ji Won;
Kim, Ki Woong

Publication type:

Article

Life history of a topic in an online discussion: a complex systems theory perspective on how one message attracts class members to create meaning collaboratively.

Published in:

International Journal of Computer-Supported Collaborative Learning, 2017, v. 12, n. 2, p. 173, doi. 10.1007/s11412-017-9255-9

By:

Vogler, Jane;
Schallert, Diane;
Jordan, Michelle;
Song, Kwangok;
Sanders, Anke;
Chiang, Yueh-hui;
Lee, Ji-Eun;
Park, Jeongbin;
Yu, Li-Tang

Publication type:

Article

Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells.

Published in:

Nature Methods, 2015, v. 12, n. 3, p. 237, doi. 10.1038/nmeth.3284

By:

Kim, Daesik;
Bae, Sangsu;
Park, Jeongbin;
Kim, Eunji;
Kim, Seokjoong;
Yu, Hye Ryeong;
Hwang, Jinha;
Kim, Jong-Il;
Kim, Jin-Soo

Publication type:

Article

SpatialSPM: statistical parametric mapping for the comparison of gene expression pattern images in multiple spatial transcriptomic datasets.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 11, p. e51, doi. 10.1093/nar/gkae293

By:

Ohn, Jungyoon;
Seo, Mi-Kyoung;
Park, Jeongbin;
Lee, Daeseung;
Choi, Hongyoon

Publication type:

Article

Protein conformational dynamics dictate the binding affinity for a ligand.

Published in:

Nature Communications, 2014, v. 5, n. 4, p. 3724, doi. 10.1038/ncomms4724

By:

Seo, Moon-Hyeong;
Park, Jeongbin;
Kim, Eunkyung;
Hohng, Sungchul;
Kim, Hak-Sung

Publication type:

Article

Bright Bifacial White‐Light Illumination by Highly Deformable Electroluminescent Devices Based on Transparent Ionic‐Hydrogel Electrodes and Quantum‐Dot Color Conversion.

Published in:

Small, 2024, v. 20, n. 37, p. 1, doi. 10.1002/smll.202400704

By:

Zhu, Yijie;
Hong, Ahyoung;
Yoon, SukYoung;
Park, Jeongbin;
Yang, Heesun;
Kwak, Jeonghun;
Yoon, Jinhwan

Publication type:

Article

Development of finely tuned liposome nanoplatform for macrophage depletion.

Published in:

Journal of Nanobiotechnology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12951-024-02325-7

By:

Choi, Tae Hyeon;
Yoo, Ran Ji;
Park, Ji Yong;
Kim, Ji Yoon;
Ann, Young Chan;
Park, Jeongbin;
Kim, Jin Sil;
Kim, Kyuwan;
Shin, Yu Jin;
Lee, Yong Jin;
Lee, Kyo Chul;
Park, Jisu;
Chung, Hyewon;
Seok, Seung Hyeok;
Im, Hyung-Jun;
Lee, Yun-Sang

Publication type:

Article

ShinyButchR: Interactive NMF-based decomposition workflow of genome-scale datasets.

Published in:

Biology Methods & Protocols, 2020, v. 5, n. 1, p. 1, doi. 10.1093/biomethods/bpaa022

By:

Quintero, Andres;
Hübschmann, Daniel;
Kurzawa, Nils;
Steinhauser, Sebastian;
Rentzsch, Philipp;
Krämer, Stephen;
Andresen, Carolin;
Park, Jeongbin;
Eils, Roland;
Schlesner, Matthias;
Herrmann, Carl

Publication type:

Article

Pheno-seq – linking visual features and gene expression in 3D cell culture systems.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48771-4

By:

Tirier, Stephan M.;
Park, Jeongbin;
Preußer, Friedrich;
Amrhein, Lisa;
Gu, Zuguang;
Steiger, Simon;
Mallm, Jan-Philipp;
Krieger, Teresa;
Waschow, Marcel;
Eismann, Björn;
Gut, Marta;
Gut, Ivo G.;
Rippe, Karsten;
Schlesner, Matthias;
Theis, Fabian;
Fuchs, Christiane;
Ball, Claudia R.;
Glimm, Hanno;
Eils, Roland;
Conrad, Christian

Publication type:

Article

Cpf1-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cpf1.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1077, doi. 10.1093/bioinformatics/btx695

By:

Park, Jeongbin;
Bae, Sangsu

Publication type:

Article

Web-based design and analysis tools for CRISPR base editing.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2585-4

By:

Hwang, Gue-Ho;
Park, Jeongbin;
Lim, Kayeong;
Kim, Sunghyun;
Yu, Jihyeon;
Yu, Eunchong;
Kim, Sang-Tae;
Eils, Roland;
Kim, Jin-Soo;
Bae, Sangsu

Publication type:

Article

Spatial Transcriptomics‐Based Identification of Molecular Markers for Nanomedicine Distribution in Tumor Tissue.

Published in:

Small Methods, 2022, v. 6, n. 11, p. 1, doi. 10.1002/smtd.202201091

By:

Park, Jeongbin;
Choi, Jinyeong;
Lee, Jae Eun;
Choi, Hongyoon;
Im, Hyung‐Jun

Publication type:

Article

Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics.

Published in:

Neuro-Oncology, 2020, v. 22, n. 8, p. 1138, doi. 10.1093/neuonc/noaa091

By:

Krieger, Teresa G;
Tirier, Stephan M;
Park, Jeongbin;
Jechow, Katharina;
Eisemann, Tanja;
Peterziel, Heike;
Angel, Peter;
Eils, Roland;
Conrad, Christian

Publication type:

Article