Works matching AU Parisi, Gustavo

Results: 51

Revenant: a database of resurrected proteins.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa031

By:

Carletti, Matias Sebastian;
Monzon, Alexander Miguel;
Garcia-Rios, Emilio;
Benitez, Guillermo;
Hirsh, Layla;
Fornasari, Maria Silvina;
Parisi, Gustavo

Publication type:

Article

ProtMiscuity: a database of promiscuous proteins.

Published in:

Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz103

By:

Rueda, Ana Julia Velez;
Palopoli, Nicolas;
Zacarías, Matías;
Sommese, Leandro Matías;
Parisi, Gustavo

Publication type:

Article

CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw038

By:

Monzon, Alexander Miguel;
Rohr, Cristian Oscar;
Fornasari, María Silvina;
Parisi, Gustavo

Publication type:

Article

Two novel unstable hemoglobin variants due to in-frame deletions of key amino acids in the β-globin chain.

Published in:

European Journal of Haematology, 2018, v. 100, n. 6, p. 529, doi. 10.1111/ejh.13029

By:

Scheps, Karen G.;
Hasenahuer, Marcia Anahí;
Parisi, Gustavo;
Targovnik, Héctor M.;
García, Eliana;
Veber, Ernesto Samuel;
Crisp, Renée;
Elena, Graciela;
Varela, Viviana;
Fornasari, María Silvina

Publication type:

Article

Addressing the Role of Conformational Diversity in Protein Structure Prediction.

Published in:

PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0154923

By:

Palopoli, Nicolas;
Monzon, Alexander Miguel;
Parisi, Gustavo;
Fornasari, Maria Silvina

Publication type:

Article

Takotsubo inducido por apendicitis aguda.

Published in:

Medicina (Buenos Aires), 2013, v. 73, n. 1, p. 52

By:

Contreras, Alejandro E.;
Parisi, Gustavo R.;
Bongiorni, Gustavo

Publication type:

Article

Homology modeling in a dynamical world.

Published in:

Protein Science: A Publication of the Protein Society, 2017, v. 26, n. 11, p. 2195, doi. 10.1002/pro.3274

By:

Monzon, Alexander Miguel;
Zea, Diego Javier;
Marino‐Buslje, Cristina;
Parisi, Gustavo

Publication type:

Article

Disorder transitions and conformational diversity cooperatively modulate biological function in proteins.

Published in:

Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 6, p. 1138, doi. 10.1002/pro.2931

By:

Zea, Diego Javier;
Monzon, Alexander Miguel;
Gonzalez, Claudia;
Fornasari, María Silvina;
Tosatto, Silvio C. E.;
Parisi, Gustavo

Publication type:

Article

On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions.

Published in:

BMC Genomics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2164-13-S4-S5

By:

Juritz, Ezequiel;
Fornasari, Maria Silvina;
Martelli, Pier Luigi;
Fariselli, Piero;
Casadio, Rita;
Parisi, Gustavo

Publication type:

Article

Evolutionary Conservation of Protein Backbone Flexibility.

Published in:

Journal of Molecular Evolution, 2006, v. 63, n. 4, p. 448, doi. 10.1007/s00239-005-0209-x

By:

Maguid, Sandra;
Fernández-Alberti, Sebastián;
Parisi, Gustavo;
Echave, Julián

Publication type:

Article

Characterization of a Nitric Oxide Synthase from the Plant Kingdom: NO Generation from the Green Alga Ostreococcus tauri Is Light Irradiance and Growth Phase Dependent.

Published in:

Plant Cell, 2010, v. 22, n. 11, p. 3816, doi. 10.1105/tpc.109.073510

By:

Foresi, Noelia;
Correa-Aragunde, Natalia;
Parisi, Gustavo;
Caló, Gonzalo;
Salerno, Graciela;
Lamattina, Lorenzo

Publication type:

Article

A Mild Procedure for Enone Preparation Catalysed by Bovine Serum Albumin in a Green and Easily Available Medium.

Published in:

Catalysis Letters, 2018, v. 148, n. 6, p. 1750, doi. 10.1007/s10562-018-2386-4

By:

Ardanaz, Sebastián M.;
Velez Rueda, Ana J.;
Parisi, Gustavo;
Iribarren, Adolfo M.;
Iglesias, Luis E.

Publication type:

Article

Large scale analysis of protein conformational transitions from aqueous to non-aqueous media.

Published in:

BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2044-2

By:

Rueda, Ana Julia Velez;
Monzon, Alexander Miguel;
Ardanaz, Sebastián M.;
Iglesias, Luis E.;
Parisi, Gustavo

Publication type:

Article

Computational Biology in Argentina.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 12, p. e257, doi. 10.1371/journal.pcbi.0030257

By:

Bassi, Sebastian;
González, Virginia;
Parisi, Gustavo

Publication type:

Article

Protein Conformational Diversity Correlates with Evolutionary Rate.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 7, p. 1500, doi. 10.1093/molbev/mst065

By:

Javier Zea, Diego;
Miguel Monzon, Alexander;
Fornasari, Maria Silvina;
Marino-Buslje, Cristina;
Parisi, Gustavo

Publication type:

Article

Protein Conformational Diversity Modulates Sequence Divergence.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 1, p. 79, doi. 10.1093/molbev/mss080

By:

Juritz, Ezequiel;
Palopoli, Nicolas;
Fornasari, Maria Silvina;
Fernandez-Alberti, Sebastian;
Parisi, Gustavo

Publication type:

Article

Curating the gnomAD database: Report of novel variants in the globin‐coding genes and bioinformatics analysis.

Published in:

Human Mutation, 2020, v. 41, n. 1, p. 81, doi. 10.1002/humu.23925

By:

Scheps, Karen G.;
Hasenahuer, Marcia A.;
Parisi, Gustavo;
Targovnik, Héctor M.;
Fornasari, María S.

Publication type:

Article

On the dynamical incompleteness of the Protein Data Bank.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 1, p. 356, doi. 10.1093/bib/bbx084

By:

Marino-Buslje, Cristina;
Monzon, Alexander Miguel;
Zea, Diego Javier;
Fornasari, María Silvina;
Parisi, Gustavo

Publication type:

Article

Targeting a Cross-Reactive Gly m 5 Soy Peptide as Responsible for Hypersensitivity Reactions in a Milk Allergy Mouse Model.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0082341

By:

Curciarello, Renata;
Smaldini, Paola L.;
Candreva, Angela M.;
González, Virginia;
Parisi, Gustavo;
Cauerhff, Ana;
Barrios, Ivana;
Blanch, Luis Bruno;
Fossati, Carlos A.;
Petruccelli, Silvana;
Docena, Guillermo H.

Publication type:

Article

Distribution of Mosquitoes in the South East of Argentina and First Report on the Analysis Based on 18S rDNA and COI Sequences.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0075516

By:

Díaz-Nieto, Leonardo M.;
Maciá, Arnaldo;
Parisi, Gustavo;
Farina, Juan L.;
Vidal-Domínguez, María E.;
Perotti, M. Alejandra;
Berón, Corina M.

Publication type:

Article

Intradural Extramedullary Plasmacytoma in a Dog.

Published in:

Acta Scientiae Veterinariae, 2020, v. 48, n. Suppl, p. 1, doi. 10.22456/1679-9216.97756

By:

Fayad Milken, Vanessa Martins;
Hilario Cursino, Lilian;
Menegon, Fernanda Gabriela;
Gonçalves Parisi, Gustavo;
Braga, Karina Michelle;
Medeiros-Ronchi, Alessandra Aparecida

Publication type:

Article

Dynactins p25 and p27 are predicted to adopt the LβH fold

Published in:

FEBS Letters, 2004, v. 562, n. 1-3, p. 1, doi. 10.1016/S0014-5793(04)00165-6

By:

Parisi, Gustavo;
Fornasari, María Silvina;
Echave, Julián

Publication type:

Article

Bioinformatics calls the school: Use of smartphones to introduce Python for bioinformatics in high schools.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006473

By:

Velez Rueda, Ana Julia;
Benítez, Guillermo I.;
Marchetti, Julia;
Hasenahuer, Marcia Anahí;
Fornasari, María Silvina;
Palopoli, Nicolas;
Parisi, Gustavo

Publication type:

Article

Quaternary Structure Constraints on Evolutionary Sequence Divergence.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 2, p. 349

By:

Fornasari, María Silvina;
Parisi, Gustavo;
Echave, Julián

Publication type:

Article

Site-Specific Amino Acid Replacement Matrices from Structurally Constrained Protein Evolution Simulations.

Published in:

Molecular Biology & Evolution, 2002, v. 19, n. 3, p. 352, doi. 10.1093/oxfordjournals.molbev.a004089

By:

Fornasari, María Silvina;
Parisi, Gustavo;
Echave, Julian

Publication type:

Article

Structural Constraints and Emergence of Sequence Patterns in Protein Evolution.

Published in:

Molecular Biology & Evolution, 2001, v. 18, n. 5, p. 750, doi. 10.1093/oxfordjournals.molbev.a003857

By:

Parisi, Gustavo;
Echave, Julián

Publication type:

Article

RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures.

Published in:

Nucleic Acids Research, 2021, v. 49, n. D1, p. D452, doi. 10.1093/nar/gkaa1097

By:

Paladin, Lisanna;
Bevilacqua, Martina;
Errigo, Sara;
Piovesan, Damiano;
Mičetić, Ivan;
Necci, Marco;
Monzon, Alexander Miguel;
Fabre, Maria Laura;
Lopez, Jose Luis;
Nilsson, Juliet F;
Rios, Javier;
Menna, Pablo Lorenzano;
Cabrera, Maia;
Buitron, Martin Gonzalez;
Kulik, Mariane Gonçalves;
Fernandez-Alberti, Sebastian;
Fornasari, Maria Silvina;
Parisi, Gustavo;
Lagares, Antonio;
Hirsh, Layla

Publication type:

Article

MobiDB: intrinsically disordered proteins in 2021.

Published in:

Nucleic Acids Research, 2021, v. 49, n. D1, p. D361, doi. 10.1093/nar/gkaa1058

By:

Piovesan, Damiano;
Necci, Marco;
Escobedo, Nahuel;
Monzon, Alexander Miguel;
Hatos, András;
Mičetić, Ivan;
Quaglia, Federica;
Paladin, Lisanna;
Ramasamy, Pathmanaban;
Dosztányi, Zsuzsanna;
Vranken, Wim F;
Davey, Norman E;
Parisi, Gustavo;
Fuxreiter, Monika;
Tosatto, Silvio C E

Publication type:

Article

Dynamics fingerprints of active conformers of epidermal growth factor receptor kinase.

Published in:

Journal of Computational Chemistry, 2018, v. 39, n. 29, p. 2472, doi. 10.1002/jcc.25590

By:

Barletta, German P.;
Hasenahuer, Marcia Anahi;
Fornasari, Maria Silvina;
Parisi, Gustavo;
Fernandez‐Alberti, Sebastian

Publication type:

Article

Functional and structural characterization of the catalytic domain of the starch synthase III from Arabidopsis thaliana.

Published in:

Proteins, 2008, v. 70, n. 1, p. 31, doi. 10.1002/prot.21469

By:

Busi, Maria V.;
Palopoli, Nicolas;
Valdez, Hugo A.;
Fornasari, Maria S.;
Wayllace, Nahuel Z.;
Gomez-Casati, Diego F.;
Parisi, Gustavo;
Ugalde, Rodolfo A.

Publication type:

Article

Starch-synthase III family encodes a tandem of three starch-binding domains.

Published in:

Proteins, 2006, v. 65, n. 1, p. 27, doi. 10.1002/prot.21007

By:

Palopoli, Nicolás;
Busi, María Victoria;
Fornasari, María Silvina;
Gomez-Casati, Diego;
Ugalde, Rodolfo;
Parisi, Gustavo

Publication type:

Article

Few Amino Acid Mutations in H6 Influenza A Virus From South American Lineage Increase Viral Replication Efficiency in Poultry.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.953738

By:

Rimondi, Agustina;
Olivera, Valeria S.;
Soria, Ivana;
Parisi, Gustavo D.;
Rumbo, Martin;
Perez, Daniel R.

Publication type:

Article

Correction: Pockets as structural descriptors of EGFR kinase conformations.

Published in:

2018

By:

Hasenahuer, Marcia Anahi;
Barletta, German Patricio;
Fernandez-Alberti, Sebastián;
Parisi, Gustavo;
Fornasari, María Silvina

Publication type:

Correction Notice

Large-scale mapping of bioactive peptides in structural and sequence space.

Published in:

PLoS ONE, 2018, v. 13, n. 1, p. 1, doi. 10.1371/journal.pone.0191063

By:

Nardo, Agustina E.;
Añón, M. Cristina;
Parisi, Gustavo

Publication type:

Article

Conformational diversity analysis reveals three functional mechanisms in proteins.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005398

By:

Monzon, Alexander Miguel;
Zea, Diego Javier;
Fornasari, María Silvina;
Saldaño, Tadeo E.;
Fernandez-Alberti, Sebastian;
Tosatto, Silvio C. E.;
Parisi, Gustavo

Publication type:

Article

Evolutionary Conserved Positions Define Protein Conformational Diversity.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004775

By:

Saldaño, Tadeo E.;
Monzon, Alexander M.;
Parisi, Gustavo;
Fernandez-Alberti, Sebastian

Publication type:

Article

CoDNaS: a database of conformational diversity in the native state of proteins.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2512, doi. 10.1093/bioinformatics/btt405

By:

Monzon, Alexander Miguel;
Juritz, Ezequiel;
Fornasari, María Silvina;
Parisi, Gustavo

Publication type:

Article

Pockets as structural descriptors of EGFR kinase conformations.

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189147

By:

Hasenahuer, Marcia Anahi;
Barletta, German Patricio;
Fernandez-Alberti, Sebastián;
Parisi, Gustavo;
Fornasari, María Silvina

Publication type:

Article

Evaluating the effect of mutations and ligand binding on transthyretin homotetramer dynamics.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0181019

By:

Saldaño, Tadeo. E.;
Zanotti, Giuseppe;
Parisi, Gustavo;
Fernandez-Alberti, Sebastian

Publication type:

Article

The structurally constrained protein evolution model accounts for sequence patterns of the LβH superfamily.

Published in:

BMC Evolutionary Biology, 2004, v. 4, p. 41, doi. 10.1186/1471-2148-4-41

By:

Parisi, Gustavo;
Echave, Julián

Publication type:

Article

Specificity traits consistent with legume-rhizobia coevolution displayed by Ensifer meliloti rhizosphere colonization.

Published in:

Environmental Microbiology, 2017, v. 19, n. 9, p. 3423, doi. 10.1111/1462-2920.13820

By:

Salas, María Eugenia;
Lozano, Mauricio Javier;
López, José Luis;
Draghi, Walter Omar;
Serrania, Javier;
Torres Tejerizo, Gonzalo Arturo;
Albicoro, Francisco Javier;
Nilsson, Juliet Fernanda;
Pistorio, Mariano;
Del Papa, María Florencia;
Parisi, Gustavo;
Becker, Anke;
Lagares, Antonio

Publication type:

Article

Twenty-One Novel EGFR Kinase Domain variants in Patients with Nonsmall Cell Lung Cancer.

Published in:

Annals of Human Genetics, 2015, v. 79, n. 6, p. 385, doi. 10.1111/ahg.12127

By:

Hasenahuer, Marcia A.;
Parisi, Gustavo;
Gautier, Marien;
Lazarowski, Alberto;
Bramuglia, Guillermo F.;
Fornasari, Maria Silvina

Publication type:

Article

BeEP Server: using evolutionary information for quality assessment of protein structure models.

Published in:

Nucleic Acids Research, 2013, v. 41, p. W398, doi. 10.1093/nar/gkt453

By:

Palopoli, Nicolas;
Lanzarotti, Esteban;
Parisi, Gustavo

Publication type:

Article

PCDB: a database of protein conformational diversity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D475, doi. 10.1093/nar/gkq1181

By:

Juritz, Ezequiel I.;
Alberti, Sebastian Fernandez;
Parisi, Gustavo D.

Publication type:

Article

CoDNaS-Q: a database of conformational diversity of the native state of proteins with quaternary structure.

Published in:

Bioinformatics, 2022, v. 38, n. 21, p. 4959, doi. 10.1093/bioinformatics/btac627

By:

Escobedo, Nahuel;
Cahui, Ronaldo Romario Tunque;
Caruso, Gastón;
Ríos, Emilio García;
Hirsh, Layla;
Monzon, Alexander Miguel;
Parisi, Gustavo;
Palopoli, Nicolas

Publication type:

Article

Impact of protein conformational diversity on AlphaFold predictions.

Published in:

Bioinformatics, 2022, v. 38, n. 10, p. 2742, doi. 10.1093/bioinformatics/btac202

By:

Saldaño, Tadeo;
Escobedo, Nahuel;
Marchetti, Julia;
Zea, Diego Javier;
Donagh, Juan Mac;
Rueda, Ana Julia Velez;
Gonik, Eduardo;
Melani, Agustina García;
Nechcoff, Julieta Novomisky;
Salas, Martín N;
Peters, Tomás;
Demitroff, Nicolás;
Alberti, Sebastian Fernandez;
Palopoli, Nicolas;
Fornasari, Maria Silvina;
Parisi, Gustavo

Publication type:

Article

CoDNaS-RNA: a database of conformational diversity in the native state of RNA.

Published in:

Bioinformatics, 2022, v. 38, n. 6, p. 1745, doi. 10.1093/bioinformatics/btab858

By:

Buitrón, Martín González;
Cahui, Ronaldo Romario Tunque;
Ríos, Emilio García;
Hirsh, Layla;
Parisi, Gustavo;
Fornasari, María Silvina;
Palopoli, Nicolas

Publication type:

Article

Combining Protein Conformational Diversity and Phylogenetic Information Using CoDNaS and CoDNaS‐Q.

Published in:

Current Protocols, 2023, v. 3, n. 5, p. 1, doi. 10.1002/cpz1.764

By:

Escobedo, Nahuel;
Monzon, Alexander Miguel;
Fornasari, María Silvina;
Palopoli, Nicolas;
Parisi, Gustavo

Publication type:

Article

Network analysis of dynamically important residues in protein structures mediating ligand-binding conformational changes.

Published in:

European Biophysics Journal, 2019, v. 48, n. 6, p. 559, doi. 10.1007/s00249-019-01384-1

By:

Saldaño, Tadeo E.;
Tosatto, Silvio C. E.;
Parisi, Gustavo;
Fernandez-Alberti, Sebastian

Publication type:

Article

Hb Wilde and Hb Patagonia: two novel elongated beta-globin variants causing dominant beta-thalassemia.

Published in:

European Journal of Haematology, 2015, v. 94, n. 6, p. 498, doi. 10.1111/ejh.12456

By:

Scheps, Karen G.;
Hasenahuer, Marcia A.;
Parisi, Gustavo;
Fornasari, María S.;
Pennesi, Sandra P.;
Erramouspe, Beatriz;
Basack, Felisa N.;
Veber, Ernesto S.;
Aversa, Luis;
Elena, Graciela;
Varela, Viviana

Publication type:

Article