Found: 51
Select item for more details and to access through your institution.
Interpretable deep residual network uncovers nucleosome positioning and associated features.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 15, p. 8734, doi. 10.1093/nar/gkae623
- By:
- Publication type:
- Article
Histone variant H2A.Z modulates nucleosome dynamics to promote DNA accessibility.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36465-5
- By:
- Publication type:
- Article
Protein homologous cores and loops: important clues to evolutionary relationships between structurally similar proteins.
- Published in:
- BMC Structural Biology, 2007, v. 7, p. 23, doi. 10.1186/1472-6807-7-23
- By:
- Publication type:
- Article
Molecular Biology and Evolution of Cancer: From Discovery to Action.
- Published in:
- Molecular Biology & Evolution, 2020, v. 37, n. 2, p. 320, doi. 10.1093/molbev/msz242
- By:
- Publication type:
- Article
Computational Approaches to Prioritize Cancer Driver Missense Mutations.
- Published in:
- International Journal of Molecular Sciences, 2018, v. 19, n. 7, p. 2113, doi. 10.3390/ijms19072113
- By:
- Publication type:
- Article
Knowledge-based annotation of small moleculebinding sites in proteins.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 365, doi. 10.1186/1471-2105-11-365
- By:
- Publication type:
- Article
HistoneDB 2.0: a histone database with variants-an integrated resource to explore histones and their variants.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw014
- By:
- Publication type:
- Article
Exploring functional roles of multibinding protein interfaces.
- Published in:
- Protein Science: A Publication of the Protein Society, 2009, v. 18, n. 8, p. 1674, doi. 10.1002/pro.181
- By:
- Publication type:
- Article
Finding biologically relevant protein domain interactions: Conserved binding mode analysis.
- Published in:
- Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 2, p. 352, doi. 10.1110/ps.051760806
- By:
- Publication type:
- Article
Prediction of functional sites by analysis of sequence and structure conservation.
- Published in:
- Protein Science: A Publication of the Protein Society, 2004, v. 13, n. 4, p. 884, doi. 10.1110/ps.03465504
- By:
- Publication type:
- Article
A comparison of position-specific score matrices based on sequence and structure alignments.
- Published in:
- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 2, p. 361, doi. 10.1110/ps.19902
- By:
- Publication type:
- Article
Mutational signatures and mutable motifs in cancer genomes.
- Published in:
- Briefings in Bioinformatics, 2018, v. 19, n. 6, p. 1085, doi. 10.1093/bib/bbx049
- By:
- Publication type:
- Article
DNA Methylation, Deamination, and Translesion Synthesis Combine to Generate Footprint Mutations in Cancer Driver Genes in B-Cell Derived Lymphomas and Other Cancers.
- Published in:
- Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.671866
- By:
- Publication type:
- Article
Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID.
- Published in:
- Nature Protocols, 2018, v. 13, n. 11, p. 2535, doi. 10.1038/s41596-018-0048-z
- By:
- Publication type:
- Article
State of the art: refinement of multiple sequence alignments.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 499, doi. 10.1186/1471-2105-7-499
- By:
- Publication type:
- Article
Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000316
- By:
- Publication type:
- Article
Deciphering ProteinProtein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 4, p. e43, doi. 10.1371/journal.pcbi.0030043
- By:
- Publication type:
- Article
Deciphering Protein-Protein Interactions. Part I. Experimental Techniques and Databases.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 3, p. 0337, doi. 10.1371/journal.pcbi.0030042
- By:
- Publication type:
- Article
Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25568-6
- By:
- Publication type:
- Article
A standardized nomenclature for mammalian histone genes.
- Published in:
- Epigenetics & Chromatin, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13072-022-00467-2
- By:
- Publication type:
- Article
Cancer Missense Mutations Alter Binding Properties of Proteins and Their Interaction Networks.
- Published in:
- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066273
- By:
- Publication type:
- Article
Homology Inference of Protein-Protein Interactions via Conserved Binding Sites.
- Published in:
- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0028896
- By:
- Publication type:
- Article
Structural and Functional Roles of Coevolved Sites in Proteins.
- Published in:
- PLoS ONE, 2010, v. 5, n. 1, p. 1, doi. 10.1371/journal.pone.0008591
- By:
- Publication type:
- Article
Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers.
- Published in:
- Scientific Reports, 2016, p. 38133, doi. 10.1038/srep38133
- By:
- Publication type:
- Article
Coevolution in defining the functional specificity.
- Published in:
- Proteins, 2009, v. 75, n. 1, p. 231, doi. 10.1002/prot.22239
- By:
- Publication type:
- Article
Evolutionary plasticity of protein families: Coupling between sequence and structure variation.
- Published in:
- Proteins, 2005, v. 61, n. 3, p. 535, doi. 10.1002/prot.20644
- By:
- Publication type:
- Article
Analysis of protein homology by assessing the (dis)similarity in protein loop regions.
- Published in:
- Proteins, 2004, v. 57, n. 3, p. 539, doi. 10.1002/prot.20237
- By:
- Publication type:
- Article
Large-scale mapping of human protein interactome using structural complexes.
- Published in:
- EMBO Reports, 2012, v. 13, n. 3, p. 266, doi. 10.1038/embor.2011.261
- By:
- Publication type:
- Article
DNA methylation cues in nucleosome geometry, stability and unwrapping.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 4, p. 1864, doi. 10.1093/nar/gkac097
- By:
- Publication type:
- Article
Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 16, p. 9229, doi. 10.1093/nar/gkx616
- By:
- Publication type:
- Article
Exploring background mutational processes to decipher cancer genetic heterogeneity.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. W1, p. W514, doi. 10.1093/nar/gkx367
- By:
- Publication type:
- Article
MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W494, doi. 10.1093/nar/gkw374
- By:
- Publication type:
- Article
SPEER-SERVER: a web server for prediction of protein specificity determining sites.
- Published in:
- Nucleic Acids Research, 2012, v. 40, p. W242, doi. 10.1093/nar/gks559
- By:
- Publication type:
- Article
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins.
- Published in:
- Nucleic Acids Research, 2012, p. D834, doi. 10.1093/nar/gkr997
- By:
- Publication type:
- Article
MMDB: 3D structures and macromolecular interactions.
- Published in:
- Nucleic Acids Research, 2012, p. D461, doi. 10.1093/nar/gkr1162
- By:
- Publication type:
- Article
Comparison of sequence and structure alignments for protein domains.
- Published in:
- Proteins, 2002, v. 48, n. 3, p. 439, doi. 10.1002/prot.10163
- By:
- Publication type:
- Article
ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder.
- Published in:
- Nucleic Acids Research, 2010, v. 38, p. D283, doi. 10.1093/nar/gkp963
- By:
- Publication type:
- Article
Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites.
- Published in:
- Nucleic Acids Research, 2010, v. 38, p. D518, doi. 10.1093/nar/gkp842
- By:
- Publication type:
- Article
Refining multiple sequence alignments with conserved core regions.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 9, p. 2598, doi. 10.1093/nar/gkl274
- By:
- Publication type:
- Article
Finding weak similarities between proteins by sequence profile comparison.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 2, p. 683, doi. 10.1093/nar/gkg154
- By:
- Publication type:
- Article
CDD: a curated Entrez database of conserved domain alignments.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 1, p. 383, doi. 10.1093/nar/gkg087
- By:
- Publication type:
- Article
MMDB: Entrez's 3D-structure database.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 1, p. 474, doi. 10.1093/nar/gkg086
- By:
- Publication type:
- Article
CDD: a database of conserved domain alignments with links to domain three-dimensional structure.
- Published in:
- Nucleic Acids Research, 2002, v. 30, n. 1, p. 281, doi. 10.1093/nar/30.1.281
- By:
- Publication type:
- Article
MMDB: Entrez’s 3D-structure database.
- Published in:
- Nucleic Acids Research, 2002, v. 30, n. 1, p. 249, doi. 10.1093/nar/30.1.249
- By:
- Publication type:
- Article
Leveraging Gene Redundancy to Find New Histone Drivers in Cancer.
- Published in:
- Cancers, 2023, v. 15, n. 13, p. 3437, doi. 10.3390/cancers15133437
- By:
- Publication type:
- Article
Structural similarity of loops in protein families: toward the understanding of protein evolution.
- Published in:
- BMC Evolutionary Biology, 2005, v. 5, p. 10, doi. 10.1186/1471-2148-5-10
- By:
- Publication type:
- Article
The relationship of protein conservation and sequence length.
- Published in:
- BMC Evolutionary Biology, 2002, v. 2, p. 20, doi. 10.1186/1471-2148-2-20
- By:
- Publication type:
- Article
Finding driver mutations in cancer: Elucidating the role of background mutational processes.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006981
- By:
- Publication type:
- Article
Oncogenic potential is related to activating effect of cancer single and double somatic mutations in receptor tyrosine kinases.
- Published in:
- Human Mutation, 2012, v. 33, n. 11, p. 1566, doi. 10.1002/humu.22145
- By:
- Publication type:
- Article
Detection of new pioneer transcription factors as cell-type-specific nucleosome binders.
- Published in:
- eLife, 2024, p. 1, doi. 10.7554/eLife.88936
- By:
- Publication type:
- Article