Works matching AU Pallen, Mark J.

Results: 68

Twenty years of bacterial genome sequencing.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 12, p. 787, doi. 10.1038/nrmicro3565

By:

Loman, Nicholas J.;
Pallen, Mark J.

Publication type:

Article

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 9, p. 599, doi. 10.1038/nrmicro2850

By:

Loman, Nicholas J.;
Constantinidou, Chrystala;
Chan, Jacqueline Z. M.;
Halachev, Mihail;
Sergeant, Martin;
Penn, Charles W.;
Robinson, Esther R.;
Pallen, Mark J.

Publication type:

Article

Assembly of hundreds of novel bacterial genomes from the chicken caecum.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-1947-1

By:

Glendinning, Laura;
Stewart, Robert D.;
Pallen, Mark J.;
Watson, Kellie A.;
Watson, Mick

Publication type:

Article

A novel EspA-associated surface organelle of enteropathogenic Escherichia coli involved in protein translocation into epithelial cells.

Published in:

EMBO Journal, 1998, v. 17, n. 8, p. 2166, doi. 10.1093/emboj/17.8.2166

By:

Knutton, Stuart;
Rosenshine, Ilan;
Pallen, Mark J.;
Nisan, Israel;
Neves, Bianca C.;
Bain, Christopher;
Wolff, Carmel;
Dougan, Gordon;
Frankel, Gad

Publication type:

Article

From The Origin of Species to the origin of bacterial flagella.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 10, p. 784, doi. 10.1038/nrmicro1493

By:

Pallen, Mark J.;
Matzke, Nicholas J.

Publication type:

Article

Bacterial pathogenomics.

Published in:

Nature, 2007, v. 449, n. 7164, p. 835, doi. 10.1038/nature06248

By:

Pallen, Mark J.;
Wren, Brendan W.

Publication type:

Article

Laboratory strains of Escherichia coli: model citizens or deceitful delinquents growing old disgracefully?

Published in:

Molecular Microbiology, 2007, v. 64, n. 4, p. 881, doi. 10.1111/j.1365-2958.2007.05710.x

By:

Hobman, Jon L.;
Penn, Charles W.;
Pallen, Mark J.

Publication type:

Article

Tetratricopeptide repeats in the type III secretion chaperone, LcrH: their role in substrate binding and secretion.

Published in:

Molecular Microbiology, 2006, v. 59, n. 1, p. 31, doi. 10.1111/j.1365-2958.2005.04923.x

By:

Edqvist, Petra J.;
Bröms, Jeanette E.;
Betts, Helen J.;
Forsberg, Åke;
Pallen, Mark J.;
Francis, Matthew S.

Publication type:

Article

A β-propeller domain within TolB.

Published in:

Molecular Microbiology, 1999, v. 31, n. 2, p. 739, doi. 10.1046/j.1365-2958.1999.01168.x

By:

Ponting, Chris P;
Pallen, Mark J

Publication type:

Article

PDZ domains in bacterial proteins.

Published in:

1997

By:

Pallen, Mark J.;
Ponting, Christopher P.

Publication type:

Letter

The HtrA family of serine proteases.

Published in:

Molecular Microbiology, 1997, v. 26, n. 2, p. 209, doi. 10.1046/j.1365-2958.1997.5601928.x

By:

Pallen, Mark J.;
Wren, Brendan W.

Publication type:

Article

Bacterial copper- and zinc-cofactored superoxide dismutase contributes to the pathogenesis of systemic salmonellosis.

Published in:

Molecular Microbiology, 1997, v. 25, n. 4, p. 785, doi. 10.1046/j.1365-2958.1997.5151877.x

By:

Farrant, Jayne L.;
Sansone, Assunta;
Canvin, James R.;
Pallen, Mark J.;
Langford, Paul R.;
Wallis, Timothy S.;
Dougan, Gordon;
Kroll, J. Simon

Publication type:

Article

Coiled-coil domains in proteins secreted by type III secretion systems.

Published in:

Molecular Microbiology, 1997, v. 25, n. 2, p. 423, doi. 10.1046/j.1365-2958.1997.4901850.x

By:

Pallen, Mark J.;
Dougan, Gordon;
Frankel, Gad

Publication type:

Article

xBASE2: a comprehensive resource for comparative bacterial genomics.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D543

By:

Chaudhuri, Roy R.;
Loman, Nicholas J.;
Snyder, Lori A.S.;
Bailey, Christopher M.;
Stekel, Dov J.;
Pallen, Mark J.

Publication type:

Article

xBASE, a collection of online databases for bacterial comparative genomics.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d335, doi. 10.1093/nar/gkj140

By:

Chaudhuri, Roy R.;
Pallen, Mark J.

Publication type:

Article

Analysis of host response to bacterial infection using error model based gene expression microarray experiments.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 7, p. 2352, doi. 10.1093/nar/gki532

By:

Stekel, Dov J.;
Sarti, Donatella;
Trevino, Victor;
Zhang, Lihong;
Salmon, Mike;
Buckley, Chris D.;
Stevens, Mark;
Pallen, Mark J.;
Penn, Charles;
Falciani, Francesco

Publication type:

Article

Analysis of host response to bacterial infection using error model based gene expression microarray experiments.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e53, doi. 10.1093/nar/gni050

By:

Stekel, Dov J.;
Sarti, Donatella;
Trevino, Victor;
Zhang, Lihong;
Salmon, Mike;
Buckley, Chris D.;
Stevens, Mark;
Pallen, Mark J.;
Penn, Charles;
Falciani, Francesco

Publication type:

Article

coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d296

By:

Chaudhuri, Roy R.;
Khan, Arshad M.;
Pallen, Mark J.

Publication type:

Article

Defining bacterial species in the genomic era: insights from the genus Acinetobacter.

Published in:

BMC Microbiology, 2012, v. 12, n. 1, p. 302, doi. 10.1186/1471-2180-12-302

By:

Chan, Jacqueline Z.-M.;
Halachev, Mihail R.;
Loman, Nicholas J.;
Constantinidou, Chrystala;
Pallen, Mark J.

Publication type:

Article

Bioinformatics analysis of the locus for enterocyte effacement provides novel insights into type-III secretion.

Published in:

BMC Microbiology, 2005, v. 5, p. 9, doi. 10.1186/1471-2180-5-9

By:

Pallen, Mark J.;
Beatson, Scott A.;
Bailey, Christopher M.

Publication type:

Article

The Complete Genome and Proteome of Laribacter hongkongensis Reveal Potential Mechanisms for Adaptations to Different Temperatures and Habitats.

Published in:

PLoS Genetics, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pgen.1000416

By:

Woo, Patrick C. Y.;
Lau, Susanna K. P.;
Tse, Herman;
Teng, Jade L. L.;
Curreem, Shirly O. T.;
Tsang, Alan K. L.;
Fan, Rachel Y. Y.;
Wong, Gilman K. M.;
Yi Huang;
Loman, Nicholas J.;
Snyder, Lori A. S.;
Cai, James J.;
Jian-Dong Huang;
Mak, William;
Pallen, Mark J.;
Si Lok;
Kwok-Yung Yuen

Publication type:

Article

Whole-Genome Sequencing of Brachyspira hyodysenteriae Isolates From England and Wales Reveals Similarities to European Isolates and Mutations Associated With Reduced Sensitivity to Antimicrobials.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.713233

By:

Stubberfield, Emma;
Sheldon, Jonathan;
Card, Roderick M.;
AbuOun, Manal;
Rogers, Jon;
Williamson, Susanna;
Kay, Gemma L.;
Pallen, Mark J.;
Anjum, Muna F.

Publication type:

Article

Microbial bioinformatics 2020.

Published in:

Microbial Biotechnology, 2016, v. 9, n. 5, p. 681, doi. 10.1111/1751-7915.12389

By:

Pallen, Mark J.

Publication type:

Article

Creation of Golden Gate constructs for gene doctoring.

Published in:

BMC Biotechnology, 2020, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12896-020-00648-5

By:

Thomson, Nicholas M.;
Zhang, Chuanzhen;
Trampari, Eleftheria;
Pallen, Mark J.

Publication type:

Article

Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03865-0

By:

Ravi, Anuradha;
Troncoso-Rey, Perla;
Ahn-Jarvis, Jennifer;
Corbin, Kendall R.;
Harris, Suzanne;
Harris, Hannah;
Aydin, Alp;
Kay, Gemma L.;
Le Viet, Thanh;
Gilroy, Rachel;
Pallen, Mark J.;
Page, Andrew J.;
O'Grady, Justin;
Warren, Frederick J.

Publication type:

Article

Identification of the anti-mycobacterial functional properties of piperidinol derivatives.

Published in:

2017

By:

Guy, Collette S;
Tichauer, Esther;
Kay, Gemma L;
Phillips, Daniel J;
Bailey, Trisha L;
Harrison, James;
Furze, Christopher M;
Millard, Andrew D;
Gibson, Matthew I;
Pallen, Mark J;
Fullam, Elizabeth

Publication type:

journal article

Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0184510

By:

Senghore, Madikay;
Otu, Jacob;
Witney, Adam;
Gehre, Florian;
Doughty, Emma L.;
Kay, Gemma L.;
Butcher, Phillip;
Salako, Kayode;
Kehinde, Aderemi;
Onyejepu, Nneka;
Idigbe, Emmanuel;
Corrah, Tumani;
De Jong, Bouke;
Pallen, Mark J.;
Antonio, Martin

Publication type:

Article

EntrezAJAX: direct web browser access to the Entrez Programming Utilities.

Published in:

2010

By:

Loman, Nicholas J.;
Pallen, Mark J.

Publication type:

Product Review

Evolutionary links between FliH/YscL-like proteins from bacterial type III secretion systems and second-stalk components of the FoF1 and vacuolar ATPases.

Published in:

Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 4, p. 935, doi. 10.1110/ps.051958806

By:

Pallen, Mark J.;
Bailey, Christopher M.;
Beatson, Scott A.

Publication type:

Article

Glucoamylase-like domains in the α- and β-subunits of phosphorylase kinase.

Published in:

Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 8, p. 1804, doi. 10.1110/ps.0371103

By:

Pallen, Mark J.

Publication type:

Article

The Gut Microbiota and the Hepatologist: Will Our Bugs Prove to be the Missing Link?

Published in:

Digestive Diseases, 2017, v. 35, n. 4, p. 377, doi. 10.1159/000456590

By:

Pallen, Mark J.;
Quraishi, Mohammed N.

Publication type:

Article

Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-019-56001-0

By:

Senghore, Madikay;
Diarra, Bassirou;
Gehre, Florian;
Otu, Jacob;
Worwui, Archibald;
Muhammad, Abdul Khalie;
Kwambana-Adams, Brenda;
Kay, Gemma L.;
Sanogo, Moumine;
Baya, Bocar;
Orsega, Susan;
Doumbia, Seydou;
Diallo, Souleymane;
de Jong, Bouke C.;
Pallen, Mark J.;
Antonio, Martin

Publication type:

Article

Author Correction: Assembly of hundreds of novel bacterial genomes from the chicken caecum.

Published in:

2021

By:

Glendinning, Laura;
Stewart, Robert D.;
Pallen, Mark J.;
Watson, Kellie A.;
Watson, Mick

Publication type:

Correction Notice

A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4.

Published in:

JAMA: Journal of the American Medical Association, 2013, v. 309, n. 14, p. 1502, doi. 10.1001/jama.2013.3231

By:

Loman, Nicholas J.;
Constantinidou, Chrystala;
Christner, Martin;
Rohde, Holger;
Chan, Jacqueline Z.-M.;
Quick, Joshua;
Weir, Jacqueline C.;
Quince, Christopher;
Smith, Geoffrey P.;
Betley, Jason R.;
Aepfelbacher, Martin;
Pallen, Mark J.

Publication type:

Article

Reviews : Infecting nonsense.

Published in:

Health Education Journal, 1991, v. 50, n. 3, p. 149, doi. 10.1177/001789699105000313

By:

Pallen, Mark J.

Publication type:

Article

Interaction of Salmonella enterica with basil and other salad leaves.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 2, p. 261, doi. 10.1038/ismej.2008.95

By:

Berger, Cedric N.;
Shaw, Robert K.;
Brown, Derek J.;
Mather, Henry;
Clare, Simon;
Dougan, Gordon;
Pallen, Mark J.;
Frankel, Gad

Publication type:

Article

Organization and architecture of AggR‐dependent promoters from enteroaggregative Escherichia coli.

Published in:

Molecular Microbiology, 2019, v. 111, n. 2, p. 534, doi. 10.1111/mmi.14172

By:

Yasir, Muhammad;
Icke, Christopher;
Abdelwahab, Radwa;
Haycocks, James R.;
Godfrey, Rita E.;
Sazinas, Pavelas;
Pallen, Mark J.;
Henderson, Ian R.;
Busby, Stephen J. W.;
Browning, Douglas F.

Publication type:

Article

Organization of the LEE1 operon regulatory region of enterohaemorrhagic Escherichia coli O157:H7 and activation by GrlA.

Published in:

Molecular Microbiology, 2011, v. 79, n. 2, p. 468, doi. 10.1111/j.1365-2958.2010.07460.x

By:

Islam, Md. Shahidul;
Bingle, Lewis E. H.;
Pallen, Mark J.;
Busby, Stephen J. W.

Publication type:

Article

Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe.

Published in:

Nature Communications, 2015, v. 6, n. 4, p. 6717, doi. 10.1038/ncomms7717

By:

Kay, Gemma L.;
Sergeant, Martin J.;
Zhou, Zhemin;
Chan, Jacqueline Z.-M.;
Millard, Andrew;
Quick, Joshua;
Szikossy, Ildikó;
Pap, Ildikó;
Spigelman, Mark;
Loman, Nicholas J.;
Achtman, Mark;
Donoghue, Helen D.;
Pallen, Mark J.

Publication type:

Article

Giant flagellins form thick flagellar filaments in two species of marine γ-proteobacteria.

Published in:

PLoS ONE, 2018, v. 13, n. 11, p. 1, doi. 10.1371/journal.pone.0206544

By:

Thomson, Nicholas M.;
Ferreira, Josie L.;
Matthews-Palmer, Teige R.;
Beeby, Morgan;
Pallen, Mark J.

Publication type:

Article

Metagenomic investigation of the equine faecal microbiome reveals extensive taxonomic diversity.

Published in:

PeerJ, 2022, p. 1, doi. 10.7717/peerj.13084

By:

Gilroy, Rachel;
Leng, Joy;
Ravi, Anuradha;
Adriaenssens, Evelien M.;
Oren, Aharon;
Baker, Dave;
La Ragione, Roberto M.;
Proudman, Christopher;
Pallen, Mark J.

Publication type:

Article

Remarkable genomic diversity among Escherichia isolates recovered from healthy chickens.

Published in:

PeerJ, 2022, p. 1, doi. 10.7717/peerj.12935

By:

Thomson, Nicholas M.;
Gilroy, Rachel;
Getino, Maria;
Foster-Nyarko, Ebenezer;
van Vliet, Arnoud H. M.;
La Ragione, Roberto M.;
Pallen, Mark J.

Publication type:

Article

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.10941

By:

Gilroy, Rachel;
Ravi, Anuradha;
Getino, Maria;
Pursley, Isabella;
Horton, Daniel L.;
Alikhan, Nabil-Fareed;
Baker, Dave;
Gharbi, Karim;
Hall, Neil;
Watson, Mick;
Adriaenssens, Evelien M.;
Foster-Nyarko, Ebenezer;
Jarju, Sheikh;
Secka, Arss;
Antonio, Martin;
Oren, Aharon;
Chaudhuri, Roy R.;
La Ragione, Roberto;
Hildebrand, Falk;
Pallen, Mark J.

Publication type:

Article

Subversion of actin dynamics by EspM effectors of attaching and effacing bacterial pathogens.

Published in:

Cellular Microbiology, 2008, v. 10, n. 7, p. 1429, doi. 10.1111/j.1462-5822.2008.01136.x

By:

Arbeloa, Ana;
Bulgin, Richard R.;
MacKenzie, Georgina;
Shaw, Robert K.;
Pallen, Mark J.;
Crepin, Valerie F.;
Berger, Cedric N.;
Frankel, Gad

Publication type:

Article

Forensic Analysis Reveals Acute Decompensation of Chronic Heart Failure in a 3500-Year-Old Egyptian Dignitary.

Published in:

Journal of Forensic Sciences, 2016, v. 61, n. 5, p. 1378, doi. 10.1111/1556-4029.13138

By:

Bianucci, Raffaella;
Loynes, Robert D.;
Sutherland, M. Linda;
Lallo, Rudy;
Kay, Gemma L.;
Froesch, Philippe;
Pallen, Mark J.;
Charlier, Philippe;
Nerlich, Andreas G.

Publication type:

Article

Metagenomic profiling of ticks: Identification of novel rickettsial genomes and detection of tick-borne canine parvovirus.

Published in:

PLoS Neglected Tropical Diseases, 2019, v. 13, n. 1, p. 1, doi. 10.1371/journal.pntd.0006805

By:

Ravi, Anuradha;
Ereqat, Suheir;
Al-Jawabreh, Amer;
Abdeen, Ziad;
Abu Shamma, Omar;
Hall, Holly;
Pallen, Mark J.;
Nasereddin, Abedelmajeed

Publication type:

Article

Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0091941

By:

Sergeant, Martin J.;
Constantinidou, Chrystala;
Cogan, Tristan A.;
Bedford, Michael R.;
Penn, Charles W.;
Pallen, Mark J.

Publication type:

Article

Microarray Analysis of the Ler Regulon in Enteropathogenic and Enterohaemorrhagic Escherichia coli Strains.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0080160

By:

Bingle, Lewis E. H.;
Constantinidou, Chrystala;
Shaw, Robert K.;
Islam, Md. Shahidul;
Patel, Mala;
Snyder, Lori A. S.;
Lee, David J.;
Penn, Charles W.;
Busby, Stephen J. W.;
Pallen, Mark J.

Publication type:

Article

Clonal Expansion within Pneumococcal Serotype 6C after Use of Seven-Valent Vaccine

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0064731

By:

Loman, Nicholas J.;
Gladstone, Rebecca A.;
Constantinidou, Chrystala;
Tocheva, Anna S.;
Jefferies, Johanna M. C.;
Faust, Saul N.;
O’Connor, Leigh;
Chan, Jacqueline;
Pallen, Mark J.;
Clarke, Stuart C.

Publication type:

Article

Tetrahydropyrazolo[1,5-a]Pyrimidine-3-Carboxamide and N-Benzyl-6′,7′-Dihydrospiro[Piperidine-4,4′-Thieno[3,2-c]Pyran] Analogues with Bactericidal Efficacy against Mycobacterium tuberculosis Targeting MmpL3.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0060933

By:

Remuiñán, Modesto J.;
Pérez-Herrán, Esther;
Rullás, Joaquín;
Alemparte, Carlos;
Martínez-Hoyos, María;
Dow, David J.;
Afari, Johnson;
Mehta, Nalini;
Esquivias, Jorge;
Jiménez, Elena;
Ortega-Muro, Fátima;
Fraile-Gabaldón, María Teresa;
Spivey, Vickey L.;
Loman, Nicholas J.;
Pallen, Mark J.;
Constantinidou, Chrystala;
Minick, Douglas J.;
Cacho, Mónica;
Rebollo-López, María José;
González, Carolina

Publication type:

Article