Works by Palaniappan, Krishnaveni

Results: 24
    1

    Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.

    Published in:
    Plant & Soil, 2022, v. 471, n. 1/2, p. 507, doi. 10.1007/s11104-021-05247-7
    By:
    • Martínez-Hidalgo, Pilar;
    • Humm, Ethan A.;
    • Still, David W.;
    • Shi, Baochen;
    • Pellegrini, Matteo;
    • de la Roca, Gabriela;
    • Veliz, Esteban;
    • Maymon, Maskit;
    • Bru, Pierrick;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
    • Shapiro, Nicole;
    • Eloe-Fadrosh, Emiley A.
    Publication type:
    Article
    2

    High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4
    By:
    • Patil, Yogita;
    • Müller, Nicolai;
    • Schink, Bernhard;
    • Whitman, William B.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Junghare, Madan
    Publication type:
    Article
    3
    4

    Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.

    Published in:
    Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0
    By:
    • Boden, Rich;
    • Hutt, Lee P.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, Tatiparthi;
    • Chew Yee Ngan;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
    5
    6

    High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 with an incomplete denitrification pathway.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0140-3
    By:
    • Zhou, En-Min;
    • Murugapiran, Senthil;
    • Mefferd, Chrisabelle;
    • Liu, Lan;
    • Xian, Wen-Dong;
    • Yin, Yi-Rui;
    • Ming, Hong;
    • Yu, Tian-Tian;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T.;
    • Ngan, Chew;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor
    Publication type:
    Article
    7

    The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x
    By:
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Tripp, H.;
    • Paez-Espino, David;
    • Tennessen, Kristin;
    • Palaniappan, Krishnaveni;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Chen, I-Min;
    • Pati, Amrita;
    • Nielsen, Torben;
    • Markowitz, Victor;
    • Kyrpides, Nikos
    Publication type:
    Article
    8
    9

    Draft genome of Paraburkholderia caballeronis TNe-841<sup>T</sup>, a free-living, nitrogen-fixing, tomato plant-associated bacterium.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0294-7
    By:
    • Rojas-Rojas, Fernando Uriel;
    • Tapia-García, Erika Yanet;
    • Maymon, Maskit;
    • Humm, Ethan;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Shapiro, Nicole;
    • Hirsch, Ann M.;
    • Estrada-de los Santos, Paulina
    Publication type:
    Article
    10

    High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0258-y
    By:
    • Matrosova, Vera Y.;
    • Gaidamakova, Elena K.;
    • Makarova, Kira S.;
    • Grichenko, Olga;
    • Klimenkova, Polina;
    • Volpe, Robert P.;
    • Tkavc, Rok;
    • Ertem, Gözen;
    • Conze, Isabel H.;
    • Brambilla, Evelyne;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole
    Publication type:
    Article
    11

    High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482<sup>T</sup>, isolated from raw cow milk.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6
    By:
    • Laviad-Shitrit, Sivan;
    • Göker, Markus;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
    12
    13

    Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

    Published in:
    Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0222-3
    By:
    • Högfors-Rönnholm, Eva;
    • Lopez-Fernandez, Margarita;
    • Christel, Stephan;
    • Brambilla, Diego;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Copeland, Alex;
    • Chen, I-Min A.;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
    • Harmon-Smith, Miranda;
    • Eloe-Fadrosh, Emiley A.
    Publication type:
    Article
    14

    Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.

    Published in:
    Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0141-3
    By:
    • Camargo, Antonio Pedro;
    • de Souza, Rafael Soares Correa;
    • de Britto Costa, Patrícia;
    • Gerhardt, Isabel Rodrigues;
    • Dante, Ricardo Augusto;
    • Teodoro, Grazielle Sales;
    • Abrahão, Anna;
    • Lambers, Hans;
    • Carazzolle, Marcelo Falsarella;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Copeland, Alex
    Publication type:
    Article
    15

    Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.

    Published in:
    Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0132-4
    By:
    • Nowinski, Brent;
    • Smith, Christa B.;
    • Thomas, Courtney M.;
    • Esson, Kaitlin;
    • Marin, Roman;
    • Preston, Christina M.;
    • Birch, James M.;
    • Scholin, Christopher A.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Copeland, Alex;
    • Chen, I.-Min A.
    Publication type:
    Article
    16

    Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.

    Published in:
    2025
    By:
    • Nunn, Brook L.;
    • Timmins-Schiffman, Emma;
    • Mudge, Miranda C.;
    • Plubell, Deanna L.;
    • Chebli, Gabriella;
    • Kubanek, Julia;
    • Riffle, Michael;
    • Noble, William S.;
    • Harvey, Elizabeth;
    • Nunn, Tasman A.;
    • Rynearson, Tatiana;
    • Huntemann, Marcel;
    • LaButti, Kurt;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris
    Publication type:
    Correction Notice
    17

    Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-04013-5
    By:
    • Nunn, Brook L.;
    • Timmins-Schiffman, Emma;
    • Mudge, Miranda C.;
    • Plubell, Deanna L.;
    • Chebli, Gabriella;
    • Kubanek, Julia;
    • Riffle, Michael;
    • Noble, William S.;
    • Harvey, Elizabeth;
    • Nunn, Tasman A.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Copeland, Alex
    Publication type:
    Article
    18

    IMG/M data management and analysis system v.7: content updates and new features.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D723, doi. 10.1093/nar/gkac976
    By:
    • Chen, I-Min A;
    • Chu, Ken;
    • Palaniappan, Krishnaveni;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Huntemann, Marcel;
    • Hajek, Patrick;
    • Ritter, Stephan J;
    • Webb, Cody;
    • Wu, Dongying;
    • Varghese, Neha J;
    • Reddy, T B K;
    • Mukherjee, Supratim;
    • Ovchinnikova, Galina;
    • Nolan, Matt;
    • Seshadri, Rekha;
    • Roux, Simon;
    • Visel, Axel;
    • Woyke, Tanja;
    • Eloe-Fadrosh, Emiley A
    Publication type:
    Article
    19

    IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D733, doi. 10.1093/nar/gkac1037
    By:
    • Camargo, Antonio Pedro;
    • Nayfach, Stephen;
    • Chen, I-Min A;
    • Palaniappan, Krishnaveni;
    • Ratner, Anna;
    • Chu, Ken;
    • Ritter, Stephan J;
    • Reddy, T B K;
    • Mukherjee, Supratim;
    • Schulz, Frederik;
    • Call, Lee;
    • Neches, Russell Y;
    • Woyke, Tanja;
    • Ivanova, Natalia N;
    • Eloe-Fadrosh, Emiley A;
    • Kyrpides, Nikos C;
    • Roux, Simon
    Publication type:
    Article
    20
    21

    Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.

    Published in:
    Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.632731
    By:
    • Thomas, Scott C.;
    • Payne, Devon;
    • Tamadonfar, Kevin O.;
    • Seymour, Cale O.;
    • Jiao, Jian-Yu;
    • Murugapiran, Senthil K.;
    • Lai, Dengxun;
    • Lau, Rebecca;
    • Bowen, Benjamin P.;
    • Silva, Leslie P.;
    • Louie, Katherine B.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Spunde, Alex;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Chen, I-Min;
    • Stamatis, Dimitrios
    Publication type:
    Article
    22

    IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.

    Published in:
    Nucleic Acids Research, 2024, v. 52, n. D1, p. D164, doi. 10.1093/nar/gkad964
    By:
    • Camargo, Antonio Pedro;
    • Call, Lee;
    • Roux, Simon;
    • Nayfach, Stephen;
    • Huntemann, Marcel;
    • Palaniappan, Krishnaveni;
    • Ratner, Anna;
    • Chu, Ken;
    • Mukherjeep, Supratim;
    • Reddy, T B K;
    • Chen, I-Min A;
    • Ivanova, Natalia N;
    • Eloe-Fadrosh, Emiley A;
    • Woyke, Tanja;
    • Baltrus, David A;
    • Castañeda-Barba, Salvador;
    • de la Cruz, Fernando;
    • Funnell, Barbara E;
    • Hall, James P J;
    • Mukhopadhyay, Aindrila
    Publication type:
    Article
    23

    Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.

    Published in:
    Current Microbiology, 2019, v. 76, n. 5, p. 566, doi. 10.1007/s00284-019-01657-0
    By:
    • Rojas-Rojas, Fernando Uriel;
    • Sánchez-López, David;
    • Tapia-García, Erika Yanet;
    • Arroyo-Herrera, Ivan;
    • Maymon, Maskit;
    • Humm, Ethan;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Shapiro, Nicole;
    • Hirsch, Ann M.;
    • Ibarra, J. Antonio
    Publication type:
    Article
    24

    The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25646-9
    By:
    • Martin, Kara;
    • Schmidt, Katrin;
    • Toseland, Andrew;
    • Boulton, Chris A.;
    • Barry, Kerrie;
    • Beszteri, Bánk;
    • Brussaard, Corina P. D.;
    • Clum, Alicia;
    • Daum, Chris G.;
    • Eloe-Fadrosh, Emiley;
    • Fong, Allison;
    • Foster, Brian;
    • Foster, Bryce;
    • Ginzburg, Michael;
    • Huntemann, Marcel;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
    • Lindquist, Erika;
    • Mukherjee, Supratim;
    • Palaniappan, Krishnaveni
    Publication type:
    Article