Works matching AU Pain, Arnab

Results: 132

Plant killers on the spot.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 9, p. 615, doi. 10.1038/nrmicro2433

By:

Pain, Arnab;
Hertz-Fowler, Christiane

Publication type:

Article

Unity in diversity: lessons from Candida.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 11, p. 763, doi. 10.1038/nrmicro2253

By:

Hertz-Fowler, Christiane;
Pain, Arnab

Publication type:

Article

Plasmodium genomics: latest milestone.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 3, p. 180, doi. 10.1038/nrmicro2096

By:

Pain, Arnab;
Hertz-Fowler, Christiane

Publication type:

Article

Sequence data swell for nematodes.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 11, p. 800, doi. 10.1038/nrmicro2021

By:

Hertz-Fowler, Christiane;
Pain, Arnab

Publication type:

Article

Genomic adaptation: a fungal perspective.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 8, p. 572, doi. 10.1038/nrmicro1964

By:

Pain, Arnab;
Hertz-Fowler, Christiane

Publication type:

Article

Variety is the spice of eukaryotic life.

Published in:

Nature Reviews Microbiology, 2007, v. 5, n. 9, p. 660, doi. 10.1038/nrmicro1741

By:

Berriman, Matthew;
Pain, Arnab

Publication type:

Article

Specialist fungi, versatile genomes.

Published in:

Nature Reviews Microbiology, 2007, v. 5, n. 5, p. 332, doi. 10.1038/nrmicro1669

By:

Hertz-Fowler, Christiane;
Pain, Arnab

Publication type:

Article

Hot and sexy moulds!

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 4, p. 244, doi. 10.1038/nrmicro1388

By:

Pain, Arnab;
Böhme, Ulrike;
Berriman, Matthew

Publication type:

Article

Genome watch: Fungi behaving badly.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 11, p. 832, doi. 10.1038/nrmicro1270

By:

Pain, Arnab

Publication type:

Article

Genome watch: A feast of protozoan genomes.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 9, p. 670, doi. 10.1038/nrmicro1237

By:

Hertz-Fowler, Christiane;
Berriman, Matthew;
Pain, Arnab

Publication type:

Article

Genome watch: Comparative Apicomplexan genomics.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 6, p. 454, doi. 10.1038/nrmicro1174

By:

Pain, Arnab;
Crossman, Lisa;
Parkhill, Julian

Publication type:

Article

Genome watch: Eukaryotes: not beyond compare.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 11, p. 856, doi. 10.1038/nrmicro1028

By:

Pain, Arnab;
Bentley, Stephen;
Parkhill, Julian

Publication type:

Article

Genome watch: Genomes beyond compare.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 8, p. 616, doi. 10.1038/nrmicro961

By:

Crossman, Lisa;
Holden, Matthew;
Pain, Arnab;
Parkhill, Julian

Publication type:

Article

Genome watch: Strength in diversity.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 5, p. 358, doi. 10.1038/nrmicro889

By:

Pain, Arnab;
Crossman, Lisa;
Sebaihia, Mohammed;
Cerdeño-Tárraga, Ana;
Parkhill, Julian

Publication type:

Article

SVAMP: sequence variation analysis, maps and phylogeny.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2227, doi. 10.1093/bioinformatics/btu176

By:

Naeem, Raeece;
Hidayah, Lailatul;
Preston, Mark D.;
Clark, Taane G.;
Pain, Arnab

Publication type:

Article

READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation.

Published in:

Bioinformatics, 2013, v. 29, n. 3, p. 391, doi. 10.1093/bioinformatics/bts684

By:

Naeem, Raeece;
Rashid, Mamoon;
Pain, Arnab

Publication type:

Article

SnoopCGH: software for visualizing comparative genomic hybridization data.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2732, doi. 10.1093/bioinformatics/btp488

By:

Almagro-Garcia, Jacob;
Manske, Magnus;
Carret, Celine;
Campino, Susana;
Auburn, Sarah;
MacInnis, Bronwyn L.;
Maslen, Gareth;
Pain, Arnab;
Newbold, Christopher I.;
Kwiatkowski, Dominic P.;
Clark, Taane G.

Publication type:

Article

Protein phosphatase 1 regulates atypical mitotic and meiotic division in Plasmodium sexual stages.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02273-0

By:

Zeeshan, Mohammad;
Pandey, Rajan;
Subudhi, Amit Kumar;
Ferguson, David J. P.;
Kaur, Gursimran;
Rashpa, Ravish;
Nugmanova, Raushan;
Brady, Declan;
Bottrill, Andrew R.;
Vaughan, Sue;
Brochet, Mathieu;
Bollen, Mathieu;
Pain, Arnab;
Holder, Anthony A.;
Guttery, David S.;
Tewari, Rita

Publication type:

Article

First report of Klebsiella quasipneumoniae harboring blaKPC-2 in Saudi Arabia.

Published in:

Antimicrobial Resistance & Infection Control, 2019, v. 8, n. 1, p. 1, doi. 10.1186/s13756-019-0653-9

By:

Hala, Sharif;
Antony, Chakkiath Paul;
Alshehri, Mohammed;
Althaqafi, Abdulhakeem O.;
Alsaedi, Asim;
Mufti, Areej;
Kaaki, Mai;
Alhaj-Hussein, Baraa T.;
Zowawi, Hosam M.;
Al-Amri, Abdulfattah;
Pain, Arnab

Publication type:

Article

Pangenome Analysis of the Soilborne Fungal Phytopathogen Rhizoctonia solani and Development of a Comprehensive Web Resource: RsolaniDB.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.839524

By:

Kaushik, Abhinav;
Roberts, Daniel P.;
Ramaprasad, Abhinay;
Mfarrej, Sara;
Nair, Mridul;
Lakshman, Dilip K.;
Pain, Arnab

Publication type:

Article

Integrated transcriptomic and proteomic analysis of pathogenic mycobacteria and their esx-1 mutants reveal secretion-dependent regulation of ESX-1 substrates and WhiB6 as a transcriptional regulator.

Published in:

PLoS ONE, 2019, v. 14, n. 1, p. 1, doi. 10.1371/journal.pone.0211003

By:

Abdallah, Abdallah M.;
Weerdenburg, Eveline M.;
Guan, Qingtian;
Ummels, Roy;
Borggreve, Stephanie;
Adroub, Sabir A.;
Malas, Tareq B.;
Naeem, Raeece;
Zhang, Huoming;
Otto, Thomas D.;
Bitter, Wilbert;
Pain, Arnab

Publication type:

Article

Corrigendum: Genome variation and evolution of the malaria parasite Plasmodium falciparum.

Published in:

2007

By:

Jeffares, Daniel C.;
Pain, Arnab;
Berry, Andrew;
Cox, Anthony V.;
Stalker, James;
Ingle, Catherine E.;
Thomas, Alan;
Quail, Michael A.;
Siebenthall, Kyle;
Uhlemann, Anne-Catrin;
Kyes, Sue;
Krishna, Sanjeev;
Newbold, Chris;
Dermitzakis, Emmanouil T.;
Berriman, Matthew

Publication type:

Correction Notice

CORRIGENDUM: Genome variation and evolution of the malaria parasite Plasmodium falciparum.

Published in:

2007

By:

Jeffares, Daniel C.;
Pain, Arnab;
Berry, Andrew;
Cox, Anthony V.;
Stalker, James;
Ingle, Catherine E;
Thomas, Alan;
Quail, Michael A.;
Siebenthall, Kyle;
Uhlemann, Anne-Catrin;
Kyes, Sue;
Krishna, Sanjeev;
Newbold, Chris;
Dermitzakis, Emmanouil T.;
Berriman, Matthew

Publication type:

Correction Notice

Genome variation and evolution of the malaria parasite Plasmodium falciparum.

Published in:

Nature Genetics, 2007, v. 39, n. 1, p. 120, doi. 10.1038/ng1931

By:

Jeffares, Daniel C.;
Pain, Arnab;
Berry, Andrew;
Cox, Anthony V.;
Stalker, James;
Ingle, Catherine E.;
Thomas, Alan;
Quail, Michael A.;
Siebenthall, Kyle;
Uhlemann, Anne-Catrin;
Kyes, Sue;
Krishna, Sanjeev;
Newbold, Chris;
Dermitzakis, Emmanouil T.;
Berriman, Matthew

Publication type:

Article

Influx of diverse, drug resistant and transmissible Plasmodium falciparum into a malaria-free setting in Qatar.

Published in:

2020

By:

Al-Rumhi, Abir;
Al-Hashami, Zainab;
Al-Hamidhi, Salama;
Gadalla, Amal;
Naeem, Raeece;
Ranford-Cartwright, Lisa;
Pain, Arnab;
Sultan, Ali A;
Babiker, Hamza A

Publication type:

journal article

A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-128

By:

Sepúlveda, Nuno;
Campino, Susana G.;
Assefa, Samuel A.;
Sutherland, Colin J.;
Pain, Arnab;
Clark, Taane G.

Publication type:

Article

Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogeniclineage of malaria parasites.

Published in:

BMC Genomics, 2010, v. 11, p. 499, doi. 10.1186/1471-2164-11-499

By:

Hunt, Paul;
Martinelli, Axel;
Modrzynska, Katarzyna;
Borges, Sofia;
Creasey, Alison;
Rodrigues, Louise;
Beraldi, Dario;
Loewe, Laurence;
Fawcett, Richard;
Kumar, Sujai;
Thomson, Marian;
Trivedi, Urmi;
Otto, Thomas D.;
Pain, Arnab;
Blaxter, Mark;
Cravo, Pedro

Publication type:

Article

Plasmodium P-Type Cyclin CYC3 Modulates Endomitotic Growth during Oocyst Development in Mosquitoes.

Published in:

PLoS Pathogens, 2015, v. 11, n. 11, p. 1, doi. 10.1371/journal.ppat.1005273

By:

Roques, Magali;
Wall, Richard J.;
Douglass, Alexander P.;
Ramaprasad, Abhinay;
Ferguson, David J. P.;
Kaindama, Mbinda L.;
Brusini, Lorenzo;
Joshi, Nimitray;
Rchiad, Zineb;
Brady, Declan;
Guttery, David S.;
Wheatley, Sally P.;
Yamano, Hiroyuki;
Holder, Anthony A.;
Pain, Arnab;
Wickstead, Bill;
Tewari, Rita

Publication type:

Article

Exome and Transcriptome Sequencing of Aedes aegypti Identifies a Locus That Confers Resistance to Brugia malayi and Alters the Immune Response.

Published in:

PLoS Pathogens, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.ppat.1004765

By:

Juneja, Punita;
Ariani, Cristina V.;
Ho, Yung Shwen;
Akorli, Jewelna;
Palmer, William J.;
Pain, Arnab;
Jiggins, Francis M.

Publication type:

Article

Recruitment of EB1, a Master Regulator of Microtubule Dynamics, to the Surface of the Theileria annulata Schizont

Published in:

PLoS Pathogens, 2013, v. 9, n. 5, p. 1, doi. 10.1371/journal.ppat.1003346

By:

Woods, Kerry L.;
Theiler, Romina;
Mühlemann, Marcus;
Segiser, Adrian;
Huber, Sandra;
Ansari, Hifzur R.;
Pain, Arnab;
Dobbelaere, Dirk A. E.

Publication type:

Article

Transition of Plasmodium Sporozoites into Liver Stage-Like Forms Is Regulated by the RNA Binding Protein Pumilio.

Published in:

PLoS Pathogens, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.ppat.1002046

By:

Gomes-Santos, Carina S. S.;
Braks, Joanna;
Prudêncio, Miguel;
Carret, Céline;
Gomes, Ana Rita;
Pain, Arnab;
Feltwell, Theresa;
Khan, Shahid;
Waters, Andrew;
Janse, Chris;
Mair, Gunnar R.;
Mota, Maria M.

Publication type:

Article

Targeted Disruption of py235ebp-1: Invasion of Erythrocytes by Plasmodium yoelii Using an Alternative Py235 Erythrocyte Binding Protein.

Published in:

PLoS Pathogens, 2011, v. 7, n. 2, p. 1, doi. 10.1371/journal.ppat.1001288

By:

Ogun, Solabomi A.;
Tewari, Rita;
Otto, Thomas D.;
Howell, Steven A.;
Knuepfer, Ellen;
Cunningham, Deirdre A.;
Zhengyao Xu;
Pain, Arnab;
Holder, Anthony A.

Publication type:

Article

Author Correction: Antennal transcriptome sequencing and identification of candidate chemoreceptor proteins from an invasive pest, the American palm weevil, Rhynchophorus palmarum.

Published in:

2021

By:

Gonzalez, Francisco;
Johny, Jibin;
Walker III, William B.;
Guan, Qingtian;
Mfarrej, Sara;
Jakše, Jernej;
Montagné, Nicolas;
Jacquin‑Joly, Emmanuelle;
Alqarni, Abdulaziz S.;
Al‑Saleh, Mohammed Ali;
Pain, Arnab;
Antony, Binu

Publication type:

Correction Notice

Metabolic pathway redundancy within the apicomplexan-dinoflagellate radiation argues against an ancient chromalveolate plastid.

Published in:

Communicative & Integrative Biology, 2016, v. 9, n. 1, p. 1, doi. 10.1080/19420889.2015.1116653

By:

Waller, Ross F.;
Gornik, Sebastian G.;
Koreny, Ludek;
Pain, Arnab

Publication type:

Article

Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel Transcript Features.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0124473

By:

Ramaprasad, Abhinay;
Mourier, Tobias;
Naeem, Raeece;
Malas, Tareq B.;
Moussa, Ehab;
Panigrahi, Aswini;
Vermont, Sarah J.;
Otto, Thomas D.;
Wastling, Jonathan;
Pain, Arnab

Publication type:

Article

Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0117771

By:

Ali, Asho;
Hasan, Zahra;
McNerney, Ruth;
Mallard, Kim;
Hill-Cawthorne, Grant;
Coll, Francesc;
Nair, Mridul;
Pain, Arnab;
Clark, Taane G.;
Hasan, Rumina

Publication type:

Article

Recombinations in Staphylococcal Cassette Chromosome mec Elements Compromise the Molecular Detection of Methicillin Resistance in Staphylococcus aureus.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0101419

By:

Hill-Cawthorne, Grant A.;
Hudson, Lyndsey O.;
El Ghany, Moataz Fouad Abd;
Piepenburg, Olaf;
Nair, Mridul;
Dodgson, Andrew;
Forrest, Matthew S.;
Clark, Taane G.;
Pain, Arnab

Publication type:

Article

Expression Analysis of the Theileria parva Subtelomere- Encoded Variable Secreted Protein Gene Family.

Published in:

PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004839

By:

Schmuckli-Maurer, Jacqueline;
Casanova, Carlo;
Stéfanie Schmied;
Affentranger, Sarah;
Parvanova, Iana;
Kang'a, Simon;
Nene, Vishvanath;
Katzer, Frank;
McKeever, Declan;
Müller, Joachim;
Bishop, Richard;
Pain, Arnab;
Dobbelaere, Dirk A. E.

Publication type:

Article

Developmental transition of Plasmodium sporozoites into liver-stage forms is regulated by the RNA binding protein Pumilio 2.

Published in:

2010

By:

Gomes-Santos, Carina S. S.;
Braks, J. Anneke M.;
Prudêncio, Miguel;
Carret, Céline K.;
Gomes, Ana Rita;
Pain, Arnab;
Feltwell, Theresa;
Khan, Shahid M.;
Waters, Andrew P.;
Janse, Chris J.;
Mair, Gunnar R.;
Mota, Maria M.

Publication type:

Abstract

NEW INITIATIVES FOR MANAGEMENT OF RED PALM WEEVIL THREATS TO HISTORICAL ARABIAN DATE PALMS.

Published in:

Florida Entomologist (Florida Entomological Society), 2011, v. 94, n. 4, p. 733, doi. 10.1653/024.094.0401

By:

MUKHTAR, MUHAMMAD;
GRASOOL, KHAWAJA;
PARRELLA, MICHAEL P.;
SHEIKH, QAISER I.;
PAIN, ARNAB;
LOPEZ-LLORCA, LUIS VICENTE;
ALDRYHIM, YOUSIF N.;
MANKIN, R. W.;
ALDAWOOD, ABDULRAHMAN S.

Publication type:

Article

Global transcriptome profiling and functional analysis reveal that tissue-specific constitutive overexpression of cytochrome P450s confers tolerance to imidacloprid in palm weevils in date palm fields.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5837-4

By:

Antony, Binu;
Johny, Jibin;
Abdelazim, Mahmoud M.;
Jakše, Jernej;
Al-Saleh, Mohammed Ali;
Pain, Arnab

Publication type:

Article

New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.

Published in:

Molecular Microbiology, 2010, v. 76, n. 1, p. 12, doi. 10.1111/j.1365-2958.2009.07026.x

By:

Otto, Thomas D.;
Wilinski, Daniel;
Assefa, Sammy;
Keane, Thomas M.;
Sarry, Louis R.;
Böhme, Ulrike;
Lemieux, Jacob;
Barrell, Bart;
Pain, Arnab;
Berriman, Matthew;
Newbold, Chris;
Llinás, Manuel

Publication type:

Article

Differential var gene expression in the organs of patients dying of falciparum malaria.

Published in:

Molecular Microbiology, 2007, v. 65, n. 4, p. 959, doi. 10.1111/j.1365-2958.2007.05837.x

By:

Montgomery, Jacqui;
Mphande, Fingani A.;
Berriman, Matthew;
Pain, Arnab;
Rogerson, Stephen J.;
Taylor, Terrie E.;
Molyneux, Malcolm E.;
Craig, Alister

Publication type:

Article

Pheromone receptor of the globally invasive quarantine pest of the palm tree, the red palm weevil (Rhynchophorus ferrugineus).

Published in:

Molecular Ecology, 2021, v. 30, n. 9, p. 2025, doi. 10.1111/mec.15874

By:

Antony, Binu;
Johny, Jibin;
Montagné, Nicolas;
Jacquin‐Joly, Emmanuelle;
Capoduro, Rémi;
Cali, Khasim;
Persaud, Krishna;
Al‐Saleh, Mohammed Ali;
Pain, Arnab

Publication type:

Article

A fast and cost-effective microsampling protocol incorporating reduced animal usage for time-series transcriptomics in rodent malaria parasites.

Published in:

Malaria Journal, 2019, v. 18, n. 1, p. 1, doi. 10.1186/s12936-019-2659-4

By:

Ramaprasad, Abhinay;
Subudhi, Amit Kumar;
Culleton, Richard;
Pain, Arnab

Publication type:

Article

Proteomic profiling of the plasma of Gambian children with cerebral malaria.

Published in:

Malaria Journal, 2018, v. 17, n. 1, p. N.PAG, doi. 10.1186/s12936-018-2487-y

By:

Moussa, Ehab M.;
Huang, Honglei;
Thézénas, Marie L.;
Fischer, Roman;
Ramaprasad, Abhinay;
Sisay-Joof, Fatou;
Jallow, Muminatou;
Pain, Arnab;
Kwiatkowski, Dominic;
Kessler, Benedikt M.;
Casals-Pascual, Climent

Publication type:

Article

A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic.

Published in:

2020

By:

Klopper, Marisa;
Heupink, Tim Hermanus;
Hill-Cawthorne, Grant;
Streicher, Elizabeth Maria;
Dippenaar, Anzaan;
de Vos, Margaretha;
Abdallah, Abdallah Musa;
Limberis, Jason;
Merker, Matthias;
Burns, Scott;
Niemann, Stefan;
Dheda, Keertan;
Posey, James;
Pain, Arnab;
Warren, Robin Mark

Publication type:

journal article

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0603-3

By:

Benavente, Ernest D.;
Coll, Francesc;
Furnham, Nick;
McNerney, Ruth;
Glynn, Judith R.;
Campino, Susana;
Pain, Arnab;
Mohareb, Fady R.;
Clark, Taane G.

Publication type:

Article

Plasmodium kinesin-8X associates with mitotic spindles and is essential for oocyst development during parasite proliferation and transmission.

Published in:

PLoS Pathogens, 2019, v. 15, n. 10, p. 1, doi. 10.1371/journal.ppat.1008048

By:

Zeeshan, Mohammad;
Shilliday, Fiona;
Tianyang Liu;
Abel, Steven;
Mourier, Tobias;
Ferguson, David J. P.;
Rea, Edward;
Stanway, Rebecca R.;
Roques, Magali;
Williams, Desiree;
Daniel, Emilie;
Brady, Declan;
Roberts, Anthony J.;
Holder, Anthony A.;
Pain, Arnab;
Le Roch, Karine G.;
Moores, Carolyn A.;
Tewari, Rita

Publication type:

Article

In silico characterization of defense system hotspots in Acinetobacter spp.

Published in:

Communications Biology, 2025, v. 3, n. 1, p. 1, doi. 10.1038/s42003-025-07459-4

By:

Yi, Wenjing;
Zhu, Ning;
Peng, Zhihan;
Chu, Xiao;
Sun, Haotian;
Song, Lei;
Guo, Zhimin;
Pain, Arnab;
Luo, Zhaoqing;
Guan, Qingtian

Publication type:

Article