Works by Pagani, Ioanna

Results: 25
    1

    Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0041-x
    By:
    • Shetty, Ameesha R.;
    • de Gannes, Vidya;
    • Obi, Chioma C.;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Jan-Fang Cheng;
    • Goodwin, Lynne A.;
    • Pitluck, Samuel;
    • Peters, Linda;
    • Mikhailova, Natalia;
    • Teshima, Hazuki;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Land, Miriam;
    • Hauser, Loren J.;
    • Kyrpides, Nikos;
    • Ivanova, Natalia;
    • Pagani, Ioanna;
    • Chain, Patrick S. G.;
    • Denef, Vincent J
    Publication type:
    Article
    2

    Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 514, doi. 10.4056/sigs.4938652
    By:
    • Reeve, Wayne;
    • Ballard, Ross;
    • Howieson, John;
    • Drew, Elizabeth;
    • Tian, Rui;
    • Bräu, Lambert;
    • Munk, Christine;
    • Davenport, Karen;
    • Chain, Patrick;
    • Goodwin, Lynne;
    • Pagani, Ioanna;
    • Huntemann, Marcel;
    • Mavrommatis, Konstantinos;
    • Pati, Amrita;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
    3

    Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968
    By:
    • Göker, Markus;
    • Lu, Megan;
    • Fiebig, Anne;
    • Nolan, Matt;
    • Lapidus, Alla;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    4

    Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383
    By:
    • Göker, Markus;
    • Spring, Stefan;
    • Scheuner, Carmen;
    • Anderson, Iain;
    • Zeytun, Ahmet;
    • Nolan, Matt;
    • Lucas, Susan;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita
    Publication type:
    Article
    5

    Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1259, doi. 10.4056/sigs.5029016
    By:
    • Hawley, Erik;
    • Piao, Hailan;
    • Scott, Nicole;
    • Malfatti, Stephanie;
    • Pagani, Ioanna;
    • Huntemann, Marcel;
    • Chen, Amy;
    • Glavina del Rio, Tijana;
    • Foster, Brian;
    • Copeland, Alex;
    • Jansson, Janet;
    • Pati, Amrita;
    • Tringe, Susannah;
    • Gilbert, Jack;
    • Lorenson, Thomas;
    • Hess, Matthias
    Publication type:
    Article
    6

    Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 359, doi. 10.4056/sigs.4348035
    By:
    • Khanna, Namita;
    • Ghosh, Ananta;
    • Huntemann, Marcel;
    • Deshpande, Shweta;
    • Han, James;
    • Chen, Amy;
    • Kyrpides, Nikos;
    • Mavrommatis, Kostas;
    • Szeto, Ernest;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Pagani, Ioanna;
    • Pati, Amrita;
    • Pitluck, Sam;
    • Nolan, Matt;
    • Woyke, Tanja;
    • Teshima, Hazuki;
    • Chertkov, Olga;
    • Daligault, Hajnalka;
    • Davenport, Karen
    Publication type:
    Article
    7

    Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701) and emended description of the genus Thermanaerovibrio.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 57, doi. 10.4056/sigs.4237901
    By:
    • Palaniappan, Krishna;
    • Meier-Kolthoff, Jan;
    • Teshima, Hazuki;
    • Nolan, Matt;
    • Lapidus, Alla;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Rohde, Manfred
    Publication type:
    Article
    8

    Genome sequence of Frateuria aurantia type strain (Kondô 67), a xanthomonade isolated from Lilium auratium Lindl.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 83, doi. 10.4056/sigs.4338002
    By:
    • Anderson, Iain;
    • Teshima, Huzuki;
    • Nolan, Matt;
    • Lapidus, Alla;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna;
    • Land, Miriam
    Publication type:
    Article
    9

    Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055).

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 177, doi. 10.4056/sigs.3637201
    By:
    • Huntemann, Marcel;
    • Stackebrandt, Erko;
    • Held, Brittany;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna;
    • Land, Miriam
    Publication type:
    Article
    10

    Complete genome sequence of Dehalobacter restrictus PER-K23.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 375, doi. 10.4056/sigs.3787426
    By:
    • Kruse, Thomas;
    • Maillard, Julien;
    • Goodwin, Lynne;
    • Woyke, Tanja;
    • Teshima, Hazuki;
    • Bruce, David;
    • Detter, Chris;
    • Tapia, Roxanne;
    • Han, Cliff;
    • Huntemann, Marcel;
    • Wei, Chia-Lin;
    • Han, James;
    • Chen, Amy;
    • Kyrpides, Nikos;
    • Szeto, Ernest;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Pagani, Ioanna;
    • Pati, Amrita;
    • Pitluck, Sam
    Publication type:
    Article
    11

    Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H), and emendation of the species Turneriella parva.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 228, doi. 10.4056/sigs.3617113
    By:
    • Stackebrandt, Erko;
    • Chertkov, Olga;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    12

    Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692) from the alkaline Lake Magadi in the East African Rift.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 165, doi. 10.4056/sigs.3607108
    By:
    • Liolos, Konstantinos;
    • Abt, Birte;
    • Scheuner, Carmen;
    • Teshima, Hazuki;
    • Held, Brittany;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy
    Publication type:
    Article
    13

    Complete genome sequence of Coriobacterium glomerans type strain (PW2) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 15, doi. 10.4056/sigs.3507020
    By:
    • Stackebrandt, Erko;
    • Zeytun, Ahmet;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    14

    Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 88, doi. 10.4056/sigs.3096473
    By:
    • Abt, Birte;
    • Göker, Markus;
    • Scheuner, Carmen;
    • Han, Cliff;
    • Lu, Megan;
    • Misra, Monica;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia
    Publication type:
    Article
    15

    High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5).

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 37, doi. 10.4056/sigs.3537045
    By:
    • Stackebrandt, Erko;
    • Chertkov, Olga;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Han, Cliff;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Bruce, David;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    16

    Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA).

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 47, doi. 10.4056/sigs.3547050
    By:
    • Mavromatis, Konstantinos;
    • Stackebrandt, Erko;
    • Held, Brittany;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    17

    Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437).

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 26, doi. 10.4056/sigs.3527032
    By:
    • Mavromatis, Konstantinos;
    • Stackebrandt, Erko;
    • Munk, Christine;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    18

    Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 210, doi. 10.4056/sigs.3117229
    By:
    • Anderson, Iain;
    • Munk, Christine;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Tice, Hope;
    • Del Rio, Tijana Glavina;
    • Jan-Fang Cheng;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna;
    • Land, Miriam
    Publication type:
    Article
    19

    Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 107, doi. 10.4056/sigs.3216895
    By:
    • Riedel, Thomas;
    • Held, Brittany;
    • Nolan, Matt;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Tice, Hope;
    • Del Rio, Tijana Glavina;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne A.;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    20

    Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 120, doi. 10.4056/sigs.3296896
    By:
    • Riedel, Thomas;
    • Held, Brittany;
    • Nolan, Matt;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Tice, Hope;
    • Del Rio, Tijana Glavina;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne A.;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    21
    22

    IMG/M 4 version of the integrated metagenome comparative analysis system.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D568, doi. 10.1093/nar/gkt919
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Chu, Ken;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Pagani, Ioanna;
    • Tringe, Susannah;
    • Huntemann, Marcel;
    • Billis, Konstantinos;
    • Varghese, Neha;
    • Tennessen, Kristin;
    • Mavromatis, Konstantinos;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    23
    24

    IMG/M: the integrated metagenome data management and comparative analysis system.

    Published in:
    Nucleic Acids Research, 2012, p. D123, doi. 10.1093/nar/gkr975
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Chu, Ken;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Grechkin, Yuri;
    • Ratner, Anna;
    • Jacob, Biju;
    • Pati, Amrita;
    • Huntemann, Marcel;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Anderson, Iain;
    • Mavromatis, Konstantinos;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    25