Works by PEDRIOLI, Patrick

Results: 23

A high-quality catalog of the Drosophila melanogaster proteome.
Published in:
Nature Biotechnology, 2007, v. 25, n. 5, p. 576, doi. 10.1038/nbt1300
By:
- Brunner, Erich;
- Ahrens, Christian H.;
- Mohanty, Sonali;
- Baetschmann, Hansruedi;
- Loevenich, Sandra;
- Potthast, Frank;
- Deutsch, Eric W.;
- Panse, Christian;
- de Lichtenberg, Ulrik;
- Rinner, Oliver;
- Lee, Hookeun;
- Pedrioli, Patrick G. A.;
- Malmstrom, Johan;
- Koehler, Katja;
- Schrimpf, Sabine;
- Krijgsveld, Jeroen;
- Kregenow, Floyd;
- Heck, Albert J. R.;
- Hafen, Ernst;
- Schlapbach, Ralph
Publication type:
Article
A common open representation of mass spectrometry data and its application to proteomics research.
Published in:
Nature Biotechnology, 2004, v. 22, n. 11, p. 1459, doi. 10.1038/nbt1031
By:
- Pedrioli, Patrick G. A.;
- Eng, Jimmy K.;
- Hubley, Robert;
- Vogelzang, Mathijs;
- Deutsch, Eric W.;
- Raught, Brian;
- Pratt, Brian;
- Nilsson, Erik;
- Angeletti, Ruth H.;
- Apweiler, Rolf;
- Cheung, Kei;
- Costello, Catherine E.;
- Hermjakob, Henning;
- Huang, Sequin;
- Julian, Randall K.;
- Kapp, Eugene;
- McComb, Mark E.;
- Oliver, Stephen G;
- Omenn, Gilbert;
- Paton, Norman W.
Publication type:
Article
Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software.
Published in:
Nature Methods, 2006, v. 3, n. 7, p. 533, doi. 10.1038/nmeth891
By:
- Pedrioli, Patrick G. A.;
- Raught, Brian;
- Xiang-Dong Zhang;
- Rogers, Richard;
- Aitchison, John;
- Matunis, Michael;
- Aebersold, Ruedi
Publication type:
Article
Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA.
Published in:
2009
By:
- Leidel, Sebastian;
- Pedrioli, Patrick G. A.;
- Bucher, Tamara;
- Brost, Renée;
- Costanzo, Michael;
- Schmidt, Alexander;
- Aebersold, Ruedi;
- Boone, Charles;
- Hofmann, Kay;
- Peter, Matthias
Publication type:
Letter
RNAi-based screening identifies the Mms22L-Nfkbil2 complex as a novel regulator of DNA replication in human cells.
Published in:
EMBO Journal, 2010, v. 29, n. 24, p. 4210, doi. 10.1038/emboj.2010.304
By:
- Piwko, Wojciech;
- Olma, Michael H;
- Held, Michael;
- Bianco, Julien N;
- Pedrioli, Patrick G A;
- Hofmann, Kay;
- Pasero, Philippe;
- Gerlich, Daniel W;
- Peter, Matthias
Publication type:
Article
VAPB/ALS8 interacts with FFAT-like proteins including the p97 cofactor FAF1 and the ASNA1 ATPase.
Published in:
BMC Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1186/1741-7007-12-39
By:
- Yorann Baron;
- Pedrioli, Patrick G.;
- Tyagi, Kshitiz;
- Johnson, Clare;
- Wood, Nicola T.;
- Fountaine, Daniel;
- Wightman, Melanie;
- Alexandru, Gabriela
Publication type:
Article
An improved SUMmOn-based methodology for the identification of ubiquitin and ubiquitin-like protein conjugation sites identifies novel ubiquitin-like protein chain linkages.
Published in:
Proteomics, 2010, v. 10, n. 2, p. 254, doi. 10.1002/pmic.200900648
By:
- Jeram, Stanley M.;
- Srikumar, Tharan;
- Zhang, Xiang-Dong;
- Anne Eisenhauer, H.;
- Rogers, Richard;
- Pedrioli, Patrick G. A.;
- Matunis, Michael;
- Raught, Brian
Publication type:
Article
Using mass spectrometry to identify ubiquitin and ubiquitin-like protein conjugation sites.
Published in:
Proteomics, 2009, v. 9, n. 4, p. 922, doi. 10.1002/pmic.200800666
By:
- Jeram, Stanley M.;
- Srikumar, Tharan;
- Pedrioli, Patrick G. A.;
- Raught, Brian
Publication type:
Article
The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability.
Published in:
Biochemical Journal, 2013, v. 451, n. 2, p. 185, doi. 10.1042/BJ20130026
By:
- BETT, John S.;
- IBRAHIM, Adel F. M.;
- GARG, Amit K.;
- KELLY, Van;
- PEDRIOLI, Patrick;
- ROCHA, Sonia;
- HAY, Ronald T.
Publication type:
Article
PCfun: a hybrid computational framework for systematic characterization of protein complex function.
Published in:
Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac239
By:
- Sharma, Varun S;
- Fossati, Andrea;
- Ciuffa, Rodolfo;
- Buljan, Marija;
- Williams, Evan G;
- Chen, Zhen;
- Shao, Wenguang;
- Pedrioli, Patrick G A;
- Purcell, Anthony W;
- Martínez, María Rodríguez;
- Song, Jiangning;
- Manica, Matteo;
- Aebersold, Ruedi;
- Li, Chen
Publication type:
Article
Phosphoproteomic Analysis Reveals Interconnected System-Wide Responses to Perturbations of Kinases and Phosphatases in Yeast.
Published in:
Science Signaling, 2010, v. 3, n. 153, p. 1, doi. 10.1126/scisignal.2001182
By:
- Bodenmiller, Bernd;
- Wanka, Stefanie;
- Kraft, Claudine;
- Urban, Jörg;
- Campbell, David;
- Pedrioli, Patrick G.;
- Gerrits, Bertran;
- Picotti, Paola;
- Lam, Henry;
- Vitek, Olga;
- Brusniak, Mi-Youn;
- Roschitzki, Bernd;
- Zhang, Chao;
- Shokat, Kevan M.;
- Schlapbach, Ralph;
- Colman-Lerner, Alejandro;
- Nolan, Garry P.;
- Nesvizhskii, Alexey I.;
- Peter, Matthias;
- Loewith, Robbie
Publication type:
Article
PRAMEL7 and CUL2 decrease NuRD stability to establish ground-state pluripotency.
Published in:
EMBO Reports, 2024, v. 25, n. 3, p. 1453, doi. 10.1038/s44319-024-00083-z
By:
- Rupasinghe, Meneka;
- Bersaglieri, Cristiana;
- Leslie Pedrioli, Deena M;
- Pedrioli, Patrick GA;
- Panatta, Martina;
- Hottiger, Michael O;
- Cinelli, Paolo;
- Santoro, Raffaella
Publication type:
Article
Urm1 at the crossroad of modifications. ‘Protein Modifications: Beyond the Usual Suspects’ Review Series.
Published in:
EMBO Reports, 2008, v. 9, n. 12, p. 1196, doi. 10.1038/embor.2008.209
By:
- Pedrioli, Patrick G A;
- Leidel, Sebastian;
- Hofmann, Kay
Publication type:
Article
Ubiquitylation-dependent localization of PLK1 in mitosis.
Published in:
Nature Cell Biology, 2013, v. 15, n. 4, p. 430, doi. 10.1038/ncb2695
By:
- Beck, Jochen;
- Maerki, Sarah;
- Posch, Markus;
- Metzger, Thibaud;
- Persaud, Avinash;
- Scheel, Hartmut;
- Hofmann, Kay;
- Rotin, Daniela;
- Pedrioli, Patrick;
- Swedlow, Jason R.;
- Peter, Matthias;
- Sumara, Izabela
Publication type:
Article
Proteogenetic drug response profiling elucidates targetable vulnerabilities of myelofibrosis.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42101-z
By:
- Wildschut, Mattheus H. E.;
- Mena, Julien;
- Dördelmann, Cyril;
- van Oostrum, Marc;
- Hale, Benjamin D.;
- Settelmeier, Jens;
- Festl, Yasmin;
- Lysenko, Veronika;
- Schürch, Patrick M.;
- Ring, Alexander;
- Severin, Yannik;
- Bader, Michael S.;
- Pedrioli, Patrick G. A.;
- Goetze, Sandra;
- van Drogen, Audrey;
- Balabanov, Stefan;
- Skoda, Radek C.;
- Lopes, Massimo;
- Wollscheid, Bernd;
- Theocharides, Alexandre P. A.
Publication type:
Article
Classification of mouse B cell types using surfaceome proteotype maps.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-13418-5
By:
- van Oostrum, Marc;
- Müller, Maik;
- Klein, Fabian;
- Bruderer, Roland;
- Zhang, Hui;
- Pedrioli, Patrick G. A.;
- Reiter, Lukas;
- Tsapogas, Panagiotis;
- Rolink, Antonius;
- Wollscheid, Bernd
Publication type:
Article
Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial.
Published in:
Molecular Systems Biology, 2021, v. 17, n. 8, p. 1, doi. 10.15252/msb.202110240
By:
- Čuklina, Jelena;
- Lee, Chloe H;
- Williams, Evan G;
- Sajic, Tatjana;
- Collins, Ben C;
- Rodríguez Martínez, María;
- Sharma, Varun S;
- Wendt, Fabian;
- Goetze, Sandra;
- Keele, Gregory R;
- Wollscheid, Bernd;
- Aebersold, Ruedi;
- Pedrioli, Patrick G A
Publication type:
Article
PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells.
Published in:
Molecular Systems Biology, 2007, v. 3, n. 1, p. 1, doi. 10.1038/msb4100182
By:
- Bodenmiller, Bernd;
- Malmstrom, Johan;
- Gerrits, Bertran;
- Campbell, David;
- Lam, Henry;
- Schmidt, Alexander;
- Rinner, Oliver;
- Mueller, Lukas N;
- Shannon, Paul T;
- Pedrioli, Patrick G;
- Panse, Christian;
- Lee, Hoo‐Keun;
- Schlapbach, Ralph;
- Aebersold, Ruedi
Publication type:
Article
The SysteMHC Atlas project.
Published in:
Nucleic Acids Research, 2018, v. 46, n. D1, p. D1237, doi. 10.1093/nar/gkx664
By:
- Shao, Wenguang;
- Pedrioli, Patrick G A;
- Wolski, Witold;
- Scurtescu, Cristian;
- Schmid, Emanuel;
- Vizcaíno, Juan A;
- Courcelles, Mathieu;
- Schuster, Heiko;
- Kowalewski, Daniel;
- Marino, Fabio
Publication type:
Article
Protein degradation and dynamic tRNA thiolation fine-tune translation at elevated temperatures.
Published in:
Nucleic Acids Research, 2015, v. 43, n. 9, p. 4701, doi. 10.1093/nar/gkv322
By:
- Tyagi, Kshitiz;
- Pedrioli, Patrick G. A.
Publication type:
Article
Author Correction: Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity.
Published in:
2020
By:
- van Oostrum, Marc;
- Campbell, Benjamin;
- Seng, Charlotte;
- Müller, Maik;
- Dieck, Susanne tom;
- Hammer, Jacqueline;
- Pedrioli, Patrick G. A.;
- Földy, Csaba;
- Tyagarajan, Shiva K.;
- Wollscheid, Bernd
Publication type:
Correction Notice
Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18494-6
By:
- van Oostrum, Marc;
- Campbell, Benjamin;
- Seng, Charlotte;
- Müller, Maik;
- tom Dieck, Susanne;
- Hammer, Jacqueline;
- Pedrioli, Patrick G. A.;
- Földy, Csaba;
- Tyagarajan, Shiva K.;
- Wollscheid, Bernd
Publication type:
Article
The IkappaB Kinase Family Phosphorylates the Parkinson's Disease Kinase LRRK2 at Ser935 and Ser910 during Toll-Like Receptor Signaling.
Published in:
PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039132
By:
- Dzamko, Nicolas;
- Inesta-Vaquera, Francisco;
- Zhang, Jiazhen;
- Xie, Chengsong;
- Cai, Huaibin;
- Arthur, Simon;
- Tan, Li;
- Choi, Hwanguen;
- Gray, Nathanael;
- Cohen, Philip;
- Pedrioli, Patrick;
- Clark, Kristopher;
- Alessi, Dario R.
Publication type:
Article