Works matching AU PEDRIOLI, Patrick

Results: 23

A common open representation of mass spectrometry data and its application to proteomics research.

Published in:

Nature Biotechnology, 2004, v. 22, n. 11, p. 1459, doi. 10.1038/nbt1031

By:

Pedrioli, Patrick G. A.;
Eng, Jimmy K.;
Hubley, Robert;
Vogelzang, Mathijs;
Deutsch, Eric W.;
Raught, Brian;
Pratt, Brian;
Nilsson, Erik;
Angeletti, Ruth H.;
Apweiler, Rolf;
Cheung, Kei;
Costello, Catherine E.;
Hermjakob, Henning;
Huang, Sequin;
Julian, Randall K.;
Kapp, Eugene;
McComb, Mark E.;
Oliver, Stephen G;
Omenn, Gilbert;
Paton, Norman W.

Publication type:

Article

VAPB/ALS8 interacts with FFAT-like proteins including the p97 cofactor FAF1 and the ASNA1 ATPase.

Published in:

BMC Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1186/1741-7007-12-39

By:

Yorann Baron;
Pedrioli, Patrick G.;
Tyagi, Kshitiz;
Johnson, Clare;
Wood, Nicola T.;
Fountaine, Daniel;
Wightman, Melanie;
Alexandru, Gabriela

Publication type:

Article

An improved SUMmOn-based methodology for the identification of ubiquitin and ubiquitin-like protein conjugation sites identifies novel ubiquitin-like protein chain linkages.

Published in:

Proteomics, 2010, v. 10, n. 2, p. 254, doi. 10.1002/pmic.200900648

By:

Jeram, Stanley M.;
Srikumar, Tharan;
Zhang, Xiang-Dong;
Anne Eisenhauer, H.;
Rogers, Richard;
Pedrioli, Patrick G. A.;
Matunis, Michael;
Raught, Brian

Publication type:

Article

Using mass spectrometry to identify ubiquitin and ubiquitin-like protein conjugation sites.

Published in:

Proteomics, 2009, v. 9, n. 4, p. 922, doi. 10.1002/pmic.200800666

By:

Jeram, Stanley M.;
Srikumar, Tharan;
Pedrioli, Patrick G. A.;
Raught, Brian

Publication type:

Article

Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA.

Published in:

2009

By:

Leidel, Sebastian;
Pedrioli, Patrick G. A.;
Bucher, Tamara;
Brost, Renée;
Costanzo, Michael;
Schmidt, Alexander;
Aebersold, Ruedi;
Boone, Charles;
Hofmann, Kay;
Peter, Matthias

Publication type:

Letter

Urm1 at the crossroad of modifications. ‘Protein Modifications: Beyond the Usual Suspects’ Review Series.

Published in:

EMBO Reports, 2008, v. 9, n. 12, p. 1196, doi. 10.1038/embor.2008.209

By:

Pedrioli, Patrick G A;
Leidel, Sebastian;
Hofmann, Kay

Publication type:

Article

PCfun: a hybrid computational framework for systematic characterization of protein complex function.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac239

By:

Sharma, Varun S;
Fossati, Andrea;
Ciuffa, Rodolfo;
Buljan, Marija;
Williams, Evan G;
Chen, Zhen;
Shao, Wenguang;
Pedrioli, Patrick G A;
Purcell, Anthony W;
Martínez, María Rodríguez;
Song, Jiangning;
Manica, Matteo;
Aebersold, Ruedi;
Li, Chen

Publication type:

Article

Proteogenetic drug response profiling elucidates targetable vulnerabilities of myelofibrosis.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42101-z

By:

Wildschut, Mattheus H. E.;
Mena, Julien;
Dördelmann, Cyril;
van Oostrum, Marc;
Hale, Benjamin D.;
Settelmeier, Jens;
Festl, Yasmin;
Lysenko, Veronika;
Schürch, Patrick M.;
Ring, Alexander;
Severin, Yannik;
Bader, Michael S.;
Pedrioli, Patrick G. A.;
Goetze, Sandra;
van Drogen, Audrey;
Balabanov, Stefan;
Skoda, Radek C.;
Lopes, Massimo;
Wollscheid, Bernd;
Theocharides, Alexandre P. A.

Publication type:

Article

Phosphoproteomic Analysis Reveals Interconnected System-Wide Responses to Perturbations of Kinases and Phosphatases in Yeast.

Published in:

Science Signaling, 2010, v. 3, n. 153, p. 1, doi. 10.1126/scisignal.2001182

By:

Bodenmiller, Bernd;
Wanka, Stefanie;
Kraft, Claudine;
Urban, Jörg;
Campbell, David;
Pedrioli, Patrick G.;
Gerrits, Bertran;
Picotti, Paola;
Lam, Henry;
Vitek, Olga;
Brusniak, Mi-Youn;
Roschitzki, Bernd;
Zhang, Chao;
Shokat, Kevan M.;
Schlapbach, Ralph;
Colman-Lerner, Alejandro;
Nolan, Garry P.;
Nesvizhskii, Alexey I.;
Peter, Matthias;
Loewith, Robbie

Publication type:

Article

The SysteMHC Atlas project.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1237, doi. 10.1093/nar/gkx664

By:

Shao, Wenguang;
Pedrioli, Patrick G A;
Wolski, Witold;
Scurtescu, Cristian;
Schmid, Emanuel;
Vizcaíno, Juan A;
Courcelles, Mathieu;
Schuster, Heiko;
Kowalewski, Daniel;
Marino, Fabio

Publication type:

Article

Protein degradation and dynamic tRNA thiolation fine-tune translation at elevated temperatures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 4701, doi. 10.1093/nar/gkv322

By:

Tyagi, Kshitiz;
Pedrioli, Patrick G. A.

Publication type:

Article

RNAi-based screening identifies the Mms22L-Nfkbil2 complex as a novel regulator of DNA replication in human cells.

Published in:

EMBO Journal, 2010, v. 29, n. 24, p. 4210, doi. 10.1038/emboj.2010.304

By:

Piwko, Wojciech;
Olma, Michael H;
Held, Michael;
Bianco, Julien N;
Pedrioli, Patrick G A;
Hofmann, Kay;
Pasero, Philippe;
Gerlich, Daniel W;
Peter, Matthias

Publication type:

Article

Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software.

Published in:

Nature Methods, 2006, v. 3, n. 7, p. 533, doi. 10.1038/nmeth891

By:

Pedrioli, Patrick G. A.;
Raught, Brian;
Xiang-Dong Zhang;
Rogers, Richard;
Aitchison, John;
Matunis, Michael;
Aebersold, Ruedi

Publication type:

Article

Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial.

Published in:

Molecular Systems Biology, 2021, v. 17, n. 8, p. 1, doi. 10.15252/msb.202110240

By:

Čuklina, Jelena;
Lee, Chloe H;
Williams, Evan G;
Sajic, Tatjana;
Collins, Ben C;
Rodríguez Martínez, María;
Sharma, Varun S;
Wendt, Fabian;
Goetze, Sandra;
Keele, Gregory R;
Wollscheid, Bernd;
Aebersold, Ruedi;
Pedrioli, Patrick G A

Publication type:

Article

PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells.

Published in:

Molecular Systems Biology, 2007, v. 3, n. 1, p. 1, doi. 10.1038/msb4100182

By:

Bodenmiller, Bernd;
Malmstrom, Johan;
Gerrits, Bertran;
Campbell, David;
Lam, Henry;
Schmidt, Alexander;
Rinner, Oliver;
Mueller, Lukas N;
Shannon, Paul T;
Pedrioli, Patrick G;
Panse, Christian;
Lee, Hoo‐Keun;
Schlapbach, Ralph;
Aebersold, Ruedi

Publication type:

Article

The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability.

Published in:

Biochemical Journal, 2013, v. 451, n. 2, p. 185, doi. 10.1042/BJ20130026

By:

BETT, John S.;
IBRAHIM, Adel F. M.;
GARG, Amit K.;
KELLY, Van;
PEDRIOLI, Patrick;
ROCHA, Sonia;
HAY, Ronald T.

Publication type:

Article

Ubiquitylation-dependent localization of PLK1 in mitosis.

Published in:

Nature Cell Biology, 2013, v. 15, n. 4, p. 430, doi. 10.1038/ncb2695

By:

Beck, Jochen;
Maerki, Sarah;
Posch, Markus;
Metzger, Thibaud;
Persaud, Avinash;
Scheel, Hartmut;
Hofmann, Kay;
Rotin, Daniela;
Pedrioli, Patrick;
Swedlow, Jason R.;
Peter, Matthias;
Sumara, Izabela

Publication type:

Article

Author Correction: Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity.

Published in:

2020

By:

van Oostrum, Marc;
Campbell, Benjamin;
Seng, Charlotte;
Müller, Maik;
Dieck, Susanne tom;
Hammer, Jacqueline;
Pedrioli, Patrick G. A.;
Földy, Csaba;
Tyagarajan, Shiva K.;
Wollscheid, Bernd

Publication type:

Correction Notice

Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18494-6

By:

van Oostrum, Marc;
Campbell, Benjamin;
Seng, Charlotte;
Müller, Maik;
tom Dieck, Susanne;
Hammer, Jacqueline;
Pedrioli, Patrick G. A.;
Földy, Csaba;
Tyagarajan, Shiva K.;
Wollscheid, Bernd

Publication type:

Article

The IkappaB Kinase Family Phosphorylates the Parkinson's Disease Kinase LRRK2 at Ser935 and Ser910 during Toll-Like Receptor Signaling.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039132

By:

Dzamko, Nicolas;
Inesta-Vaquera, Francisco;
Zhang, Jiazhen;
Xie, Chengsong;
Cai, Huaibin;
Arthur, Simon;
Tan, Li;
Choi, Hwanguen;
Gray, Nathanael;
Cohen, Philip;
Pedrioli, Patrick;
Clark, Kristopher;
Alessi, Dario R.

Publication type:

Article

PRAMEL7 and CUL2 decrease NuRD stability to establish ground-state pluripotency.

Published in:

EMBO Reports, 2024, v. 25, n. 3, p. 1453, doi. 10.1038/s44319-024-00083-z

By:

Rupasinghe, Meneka;
Bersaglieri, Cristiana;
Leslie Pedrioli, Deena M;
Pedrioli, Patrick GA;
Panatta, Martina;
Hottiger, Michael O;
Cinelli, Paolo;
Santoro, Raffaella

Publication type:

Article

Classification of mouse B cell types using surfaceome proteotype maps.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-13418-5

By:

van Oostrum, Marc;
Müller, Maik;
Klein, Fabian;
Bruderer, Roland;
Zhang, Hui;
Pedrioli, Patrick G. A.;
Reiter, Lukas;
Tsapogas, Panagiotis;
Rolink, Antonius;
Wollscheid, Bernd

Publication type:

Article

A high-quality catalog of the Drosophila melanogaster proteome.

Published in:

Nature Biotechnology, 2007, v. 25, n. 5, p. 576, doi. 10.1038/nbt1300

By:

Brunner, Erich;
Ahrens, Christian H.;
Mohanty, Sonali;
Baetschmann, Hansruedi;
Loevenich, Sandra;
Potthast, Frank;
Deutsch, Eric W.;
Panse, Christian;
de Lichtenberg, Ulrik;
Rinner, Oliver;
Lee, Hookeun;
Pedrioli, Patrick G. A.;
Malmstrom, Johan;
Koehler, Katja;
Schrimpf, Sabine;
Krijgsveld, Jeroen;
Kregenow, Floyd;
Heck, Albert J. R.;
Hafen, Ernst;
Schlapbach, Ralph

Publication type:

Article