Found: 7

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  • Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49591-5
    By:
    • Khawaja, Tamim;
    • Mäklin, Tommi;
    • Kallonen, Teemu;
    • Gladstone, Rebecca A.;
    • Pöntinen, Anna K.;
    • Mero, Sointu;
    • Thorpe, Harry A.;
    • Samuelsen, Ørjan;
    • Parkhill, Julian;
    • Izhar, Mateen;
    • Akhtar, M. Waheed;
    • Corander, Jukka;
    • Kantele, Anu
    Publication type:
    Article

  • Dissemination of extensively drug-resistant NDMproducing Providencia stuartii in Europe linked to patients transferred from Ukraine, March 2022 to March 2023.

    Published in:
    Eurosurveillance (15607917), 2024, v. 29, n. 23, p. 32, doi. 10.2807/1560-7917.ES.2024.29.23.2300616
    By:
    • Witteveen, Sandra;
    • Hans, Jörg B.;
    • Izdebski, Radosław;
    • Hasman, Henrik;
    • Samuelsen, Ørjan;
    • Dortet, Laurent;
    • Pfeifer, Yvonne;
    • Delappe, Niall;
    • Oteo-Iglesias, Jesús;
    • Żabicka, Dorota;
    • Cormican, Martin;
    • Sandfort, Mirco;
    • Reichert, Felix;
    • Pöntinen, Anna K.;
    • Fischer, Martin A.;
    • Verkaik, Nelianne;
    • Pérez-Vazquez, María;
    • Pfennigwerth, Niels;
    • Hammerum, Anette M.;
    • Hallstrøm, Søren
    Publication type:
    Article

  • Detecting co-selection through excess linkage disequilibrium in bacterial genomes.

    Published in:
    NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae061
    By:
    • Mallawaarachchi, Sudaraka;
    • Tonkin-Hill, Gerry;
    • Pöntinen, Anna K.;
    • Calland, Jessica K.;
    • Gladstone, Rebecca A.;
    • Arredondo-Alonso, Sergio;
    • MacAlasdair, Neil;
    • Thorpe, Harry A.;
    • Top, Janetta;
    • Sheppard, Samuel K.;
    • Balding, David;
    • Croucher, Nicholas J.;
    • Corander, Jukka
    Publication type:
    Article

  • Mge-cluster: a reference-free approach for typing bacterial plasmids.

    Published in:
    NAR Genomics & Bioinformatics, 2023, v. 5, n. 3, p. 1, doi. 10.1093/nargab/lqad066
    By:
    • Arredondo-Alonso, Sergio;
    • Gladstone, Rebecca A;
    • Pöntinen, Anna K;
    • Gama, João A;
    • Schürch, Anita C;
    • Lanza, Val F;
    • Johnsen, Pål Jarle;
    • Samuelsen, Ørjan;
    • Tonkin-Hill, Gerry;
    • Corander, Jukka
    Publication type:
    Article

  • Evolutionary and functional history of the Escherichia coli K1 capsule.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39052-w
    By:
    • Arredondo-Alonso, Sergio;
    • Blundell-Hunter, George;
    • Fu, Zuyi;
    • Gladstone, Rebecca A.;
    • Fillol-Salom, Alfred;
    • Loraine, Jessica;
    • Cloutman-Green, Elaine;
    • Johnsen, Pål J.;
    • Samuelsen, Ørjan;
    • Pöntinen, Anna K.;
    • Cléon, François;
    • Chavez-Bueno, Susana;
    • De la Cruz, Miguel A.;
    • Ares, Miguel A.;
    • Vongsouvath, Manivanh;
    • Chmielarczyk, Agnieszka;
    • Horner, Carolyne;
    • Klein, Nigel;
    • McNally, Alan;
    • Reis, Joice N.
    Publication type:
    Article

  • high-throughput multiplexing and selection strategy to complete bacterial genomes.

    Published in:
    GigaScience, 2021, v. 10, n. 12, p. 1, doi. 10.1093/gigascience/giab079
    By:
    • Arredondo-Alonso, Sergio;
    • Pöntinen, Anna K;
    • Cléon, François;
    • Gladstone, Rebecca A;
    • Schürch, Anita C;
    • Johnsen, Pål J;
    • Samuelsen, Ørjan;
    • Corander, Jukka
    Publication type:
    Article

  • Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21749-5
    By:
    • Pöntinen, Anna K.;
    • Top, Janetta;
    • Arredondo-Alonso, Sergio;
    • Tonkin-Hill, Gerry;
    • Freitas, Ana R.;
    • Novais, Carla;
    • Gladstone, Rebecca A.;
    • Pesonen, Maiju;
    • Meneses, Rodrigo;
    • Pesonen, Henri;
    • Lees, John A.;
    • Jamrozy, Dorota;
    • Bentley, Stephen D.;
    • Lanza, Val F.;
    • Torres, Carmen;
    • Peixe, Luisa;
    • Coque, Teresa M.;
    • Parkhill, Julian;
    • Schürch, Anita C.;
    • Willems, Rob J. L.
    Publication type:
    Article