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Tracing the Repertoire of Promiscuous Enzymes along the Metabolic Pathways in Archaeal Organisms.
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- Life (2075-1729), 2017, v. 7, n. 3, p. 30, doi. 10.3390/life7030030
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- Article
Coiled-coil domains enhance the membrane association of Salmonella type III effectors.
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- Cellular Microbiology, 2011, v. 13, n. 10, p. 1497, doi. 10.1111/j.1462-5822.2011.01635.x
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A functional and phylogenetic comparison of quorum sensing related genes in Brucella melitensis 16M.
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- Journal of Microbiology, 2014, v. 52, n. 8, p. 709, doi. 10.1007/s12275-014-3570-x
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- Article
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.
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- Nucleic Acids Research, 2016, v. 44, p. D133, doi. 10.1093/nar/gkv1156
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Transcription Factors in <i>Escherichia coli</i> Prefer the <i>Holo</i> Conformation.
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- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0065723
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The lifestyle of prokaryotic organisms influences the repertoire of promiscuous enzymes.
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- Proteins, 2015, v. 83, n. 9, p. 1625, doi. 10.1002/prot.24847
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Electrostatic analysis of bacterial expansins.
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- Proteins, 2015, v. 83, n. 2, p. 215, doi. 10.1002/prot.24718
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- Article
Identification of functional motions in the adenylate kinase (ADK) protein family by computational hybrid approaches.
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- Proteins, 2011, v. 79, n. 5, p. 1662, doi. 10.1002/prot.22995
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Protein homology detection and fold inference through multiple alignment entropy profiles.
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- Proteins, 2008, v. 70, n. 1, p. 248, doi. 10.1002/prot.21506
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- Article
Characterization of promoters in archaeal genomes based on DNA structural parameters.
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- MicrobiologyOpen, 2021, v. 10, n. 5, p. 1, doi. 10.1002/mbo3.1230
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- Article
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples.
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- MicrobiologyOpen, 2021, v. 10, n. 2, p. 1, doi. 10.1002/mbo3.1183
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- Article
Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples.
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- MicrobiologyOpen, 2021, v. 10, n. 2, p. 1, doi. 10.1002/mbo3.1183
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- Article
Construction and analysis of gene co-expression network in the pathogenic fungus Ustilago maydis.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1048694
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- Article
Comparing Sediment Microbiomes in Contaminated and Pristine Wetlands along the Coast of Yucatan.
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- Microorganisms, 2021, v. 9, n. 4, p. 877, doi. 10.3390/microorganisms9040877
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- Article
The Microbial Composition in Circumneutral Thermal Springs from Chignahuapan, Puebla, Mexico Reveals the Presence of Particular Sulfur-Oxidizing Bacterial and Viral Communities.
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- Microorganisms, 2020, v. 8, n. 11, p. 1677, doi. 10.3390/microorganisms8111677
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- Article
TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d98
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- Article
RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12.
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- Nucleic Acids Research, 2001, v. 29, n. 1, p. 72, doi. 10.1093/nar/29.1.72
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- Article
The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12.
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- Nucleic Acids Research, 2000, v. 28, n. 8, p. 1838, doi. 10.1093/nar/28.8.1838
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- Article
Genome misclassification of Klebsiella variicola and Klebsiella quasipneumoniae isolated from plants, animals and humans.
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- Salud Pública de México, 2018, v. 60, n. 1, p. 56, doi. 10.21149/8149
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- Article
The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains.
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- PLoS ONE, 2019, v. 14, n. 12, p. N.PAG, doi. 10.1371/journal.pone.0226604
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- Article
In Silico Identification of Chikungunya Virus B- and T-Cell Epitopes with High Antigenic Potential for Vaccine Development.
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- Viruses (1999-4915), 2021, v. 13, n. 12, p. 2360, doi. 10.3390/v13122360
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Identification and Genomic Analysis of Transcription Factors in Archaeal Genomes Exemplifies Their Functional Architecture and Evolutionary Origin.
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- Molecular Biology & Evolution, 2010, v. 27, n. 6, p. 1449, doi. 10.1093/molbev/msq033
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Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42.
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- Archives of Microbiology, 2016, v. 198, n. 9, p. 847, doi. 10.1007/s00203-016-1241-5
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- Article
The transcriptional activator of the bfp operon in EPEC (PerA) interacts with the RNA polymerase alpha subunit.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-87586-0
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- Article
Identifying Genes Devoted to the Cell Death Process in the Gene Regulatory Network of Ustilago maydis.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.680290
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- Article
A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp.
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- PLoS ONE, 2022, v. 17, n. 8, p. 1, doi. 10.1371/journal.pone.0271640
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- Article
Evaluation of the Abundance of DNA-Binding Transcription Factors in Prokaryotes.
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- Genes, 2020, v. 11, n. 1, p. 52, doi. 10.3390/genes11010052
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Intermediate-Salinity Systems at High Altitudes in the Peruvian Andes Unveil a High Diversity and Abundance of Bacteria and Viruses.
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- Genes, 2019, v. 10, n. 11, p. 891, doi. 10.3390/genes10110891
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Identification of functional signatures in the metabolism of the three cellular domains of life.
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- PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0217083
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Screening and Structural Characterization of Heat Shock Response Elements (HSEs) in Entamoeba histolytica Promoters.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 2, p. 1319, doi. 10.3390/ijms25021319
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Global analysis of transcriptional regulators in Staphylococcus aureus.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-126
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- Article
Machine learning and statistics shape a novel path in archaeal promoter annotation.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04714-x
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- Article
Common History at the Origin of the Position–Function Correlation in Transcriptional Regulators in Archaea and Bacteria.
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- Journal of Molecular Evolution, 2001, v. 53, n. 3, p. 172, doi. 10.1007/s002390010207
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- Article
Comprehensive comparative analysis of the periodontal pathogen Porphyromonas gingivalis: exploring the pan-genome, the reconstruction of the gene regulatory network and genome-scale metabolic network.
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- Letters in Applied Microbiology, 2024, v. 77, n. 5, p. 1, doi. 10.1093/lambio/ovae048
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