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Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes.
Published in:
Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1336532
By:
- Gand, Mathieu;
- Navickaite, Indre;
- Bartsch, Lee-Julia;
- Grützke, Josephine;
- Overballe-Petersen, Søren;
- Rasmussen, Astrid;
- Otani, Saria;
- Michelacci, Valeria;
- Rodríguez Matamoros, Bosco;
- González-Zorn, Bruno;
- Brouwer, Michael S. M.;
- Di Marcantonio, Lisa;
- Bloemen, Bram;
- Vanneste, Kevin;
- Roosens, Nancy H. C. J.;
- AbuOun, Manal;
- De Keersmaecker, Sigrid C. J.
Publication type:
Article
Turn Up the Heat--Food and Clinical Escherichia coli Isolates Feature Two Transferrable Loci of Heat Resistance.
Published in:
Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00579
By:
- Boll, Erik J.;
- Marti, Roger;
- Hasman, Henrik;
- Overballe-Petersen, Søren;
- Stegger, Marc;
- Kim Ng;
- Knøche, Susanne;
- Krogfelt, Karen A.;
- Hummerjohann, Joerg;
- Struve, Carsten
Publication type:
Article
Fatal 3-Nitropropionic Acid Poisoning after Consuming Coconut Water.
Published in:
2021
By:
- Birkelund, Thomas;
- Johansen, Rakel F.;
- Illum, Dorte G.;
- Dyrskog, Stig Eric;
- Østergaard, Jakob A.;
- Falconer, Travis M.;
- Andersen, Chris;
- Fridholm, Helena;
- Overballe-Petersen, Søren;
- Jensen, Jørgen S.
Publication type:
journal article
A case of blaNDM-1-positive Salmonella Kottbus, Denmark, November 2020.
Published in:
Eurosurveillance (15607917), 2021, v. 26, n. 26, p. 14, doi. 10.2807/1560-7917.ES.2021.26.26.2100569
By:
- Nielsen, Hans Linde;
- Thomsen, Philip K.;
- Litrup, Eva;
- Torpdahl, Mia;
- Overballe-Petersen, Søren;
- Hansen, Frank;
- Christensen, Kathrine Schultz;
- Hasman, Henrik
Publication type:
Article
Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains.
Published in:
PLoS Neglected Tropical Diseases, 2020, v. 14, n. 9, p. 1, doi. 10.1371/journal.pntd.0008613
By:
- Boisen, Nadia;
- Østerlund, Mark T.;
- Joensen, Katrine G.;
- Santiago, Araceli E.;
- Mandomando, Inacio;
- Cravioto, Alejandro;
- Chattaway, Marie A.;
- Gonyar, Laura A.;
- Overballe-Petersen, Søren;
- Stine, O. Colin;
- Rasko, David A.;
- Scheutz, Flemming;
- Nataro, James P.
Publication type:
Article
Characterisation of Colistin -Resistant Enterobacterales and Acinetobacter Strains Carrying mcr Genes from Asian Aquaculture Products.
Published in:
Antibiotics (2079-6382), 2021, v. 10, n. 7, p. 838, doi. 10.3390/antibiotics10070838
By:
- Kalová, Alžběta;
- Gelbíčová, Tereza;
- Overballe-Petersen, Søren;
- Litrup, Eva;
- Karpíšková, Renáta
Publication type:
Article
Possible misinterpretation of penicillin susceptibility in Staphylococcus aureus blood isolate due to in vitro loss of the blaZ gene.
Published in:
2022
By:
- Eriksen, Helle Brander;
- Petersen, Andreas;
- Pedersen, Michael;
- Overballe-Petersen, Søren;
- Larsen, Anders Rhod;
- Holzknecht, Barbara Juliane
Publication type:
Case Study
Plugging the leaks: antibiotic resistance at human–animal interfaces in low‐resource settings.
Published in:
Frontiers in Ecology & the Environment, 2023, v. 21, n. 9, p. 428, doi. 10.1002/fee.2639
By:
- Nadimpalli, Maya L;
- Stegger, Marc;
- Viau, Roberto;
- Yith, Vuthy;
- de Lauzanne, Agathe;
- Sem, Nita;
- Borand, Laurence;
- Huynh, Bich‐tram;
- Brisse, Sylvain;
- Passet, Virginie;
- Overballe‐Petersen, Søren;
- Aziz, Maliha;
- Gouali, Malika;
- Jacobs, Jan;
- Phe, Thong;
- Hungate, Bruce A;
- Leshyk, Victor O;
- Pickering, Amy J;
- Gravey, François;
- Liu, Cindy M
Publication type:
Article
Horizontal transfer of short and degraded DNA has evolutionary implications for microbes and eukaryotic sexual reproduction.
Published in:
BioEssays, 2014, v. 36, n. 10, p. 1005, doi. 10.1002/bies.201400035
By:
- Overballe‐Petersen, Søren;
- Willerslev, Eske
Publication type:
Article
IncI1 ST3 and IncI1 ST7 plasmids from CTX-M-1-producing Escherichia coli obtained from patients with bloodstream infections are closely related to plasmids from E. coli of animal origin.
Published in:
2019
By:
- Valcek, Adam;
- Roer, Louise;
- Overballe-Petersen, Søren;
- Hansen, Frank;
- Bortolaia, Valeria;
- Leekitcharoenphon, Pimlapas;
- Korsgaard, Helle B;
- Seyfarth, Anne Mette;
- Hendriksen, Rene S;
- Hasman, Henrik;
- Hammerum, Anette M
Publication type:
journal article
ST131 fimH22 Escherichia coli isolate with a blaCMY-2/IncI1/ST12 plasmid obtained from a patient with bloodstream infection: highly similar to E. coli isolates of broiler origin.
Published in:
2019
By:
- Roer, Louise;
- Overballe-Petersen, Søren;
- Hansen, Frank;
- Johannesen, Thor B;
- Stegger, Marc;
- Bortolaia, Valeria;
- Leekitcharoenphon, Pimlapas;
- Korsgaard, Helle B;
- Seyfarth, Anne Mette;
- Mossong, Joël;
- Wattiau, Pierre;
- Boland, Cécile;
- Hansen, Dennis S;
- Hasman, Henrik;
- Hammerum, Anette M;
- Hendriksen, Rene S
Publication type:
journal article
MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads.
Published in:
Biology Methods & Protocols, 2021, v. 6, n. 1, p. 1, doi. 10.1093/biomethods/bpab008
By:
- Hallgren, Malte B;
- Overballe-Petersen, Søren;
- Lund, Ole;
- Hasman, Henrik;
- Clausen, Philip T L C
Publication type:
Article
Biogeographical variation in antimicrobial resistance in rivers is influenced by agriculture and is spread through bacteriophages.
Published in:
Environmental Microbiology, 2022, v. 24, n. 10, p. 4869, doi. 10.1111/1462-2920.16122
By:
- Andersson, Tilde;
- Adell, Aiko D.;
- Moreno‐Switt, Andrea I.;
- Spégel, Peter;
- Turner, Charlotta;
- Overballe‐Petersen, Søren;
- Fuursted, Kurt;
- Lood, Rolf
Publication type:
Article
Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014.
Published in:
PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0187832
By:
- Samuelsen, Ørjan;
- Overballe-Petersen, Søren;
- Bjørnholt, Jørgen Vildershøj;
- Brisse, Sylvain;
- Doumith, Michel;
- Woodford, Neil;
- Hopkins, Katie L.;
- Aasnæs, Bettina;
- Haldorsen, Bjørg;
- Sundsfjord, Arnfinn;
- null, null
Publication type:
Article

Found: 14