Works by Otu, Hasan H

Results: 39

Prediction of Diabetic Nephropathy Using Urine Proteomic Profiling 10 Years Prior to Development of Nephropathy.

Published in:

Diabetes Care, 2007, v. 30, n. 3, p. 638, doi. 10.2337/dc06-1656

By:

Otu, Hasan H.;
Can, Handan;
Spentzos, Dimitrios;
Nelson, Robert G.;
Hanson, Robert L.;
Looker, Helen C.;
Knowler, William C.;
Monroy, Manuel;
Libermann, Towia A.;
Karumanchi, S. Ananth;
Thadhani, Ravi;
Otu, Hasan H

Publication type:

Article

Integration of Meta-Multi-Omics Data Using Probabilistic Graphs and External Knowledge.

Published in:

Cells (2073-4409), 2023, v. 12, n. 15, p. 1998, doi. 10.3390/cells12151998

By:

Can, Handan;
Chanumolu, Sree K.;
Nielsen, Barbara D.;
Alvarez, Sophie;
Naldrett, Michael J.;
Ünlü, Gülhan;
Otu, Hasan H.

Publication type:

Article

Optimization and evaluation of surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) with reversed-phase protein arrays for protein profiling.

Published in:

Clinical Chemistry & Laboratory Medicine, 2005, v. 43, n. 2, p. 133, doi. 10.1515/CCLM.2005.022

By:

Aivado, Manuel;
Spentzos, Dimitrios;
Alterovitz, Gil;
Otu, Hasan H.;
Grall, Franck;
Giagounidis, Aristoteles A. N.;
Wells, Meghan;
Cho, Je-Yoel;
Germing, Ulrich;
Czibere, Akos;
Prall, Wolf C.;
Porter, Chris;
Ramoni, Marco F.;
Libermann, Towia A.

Publication type:

Article

Nicotine Exposure During Pregnancy Results in Persistent Midline Epithelial Seam With Improper Palatal Fusion.

Published in:

2016

By:

Ozturk, Ferhat;
Sheldon, Elizabeth;
Sharma, Janki;
Canturk, Kemal Murat;
Otu, Hasan H.;
Nawshad, Ali

Publication type:

journal article

Essential role of Jun family transcription factors in PU.1 knockdown–induced leukemic stem cells.

Published in:

Nature Genetics, 2006, v. 38, n. 11, p. 1269, doi. 10.1038/ng1898

By:

Steidl, Ulrich;
Rosenbauer, Frank;
Verhaak, Roel G. W.;
Xuesong Gu;
Ebralidze, Alexander;
Otu, Hasan H.;
Klippel, Steffen;
Steidl, Christian;
Bruns, Ingmar;
Costa, Daniel B.;
Wagner, Katharina;
Aivado, Manuel;
Kobbe, Guido;
Valk, Peter J. M.;
Passegué, Emmanuelle;
Libermann, Towia A.;
Delwel, Ruud;
Tenen, Daniel G.

Publication type:

Article

A new sequence distance measure for phylogenetic tree construction.

Published in:

Bioinformatics, 2003, v. 19, n. 16, p. 2122, doi. 10.1093/bioinformatics/btg295

By:

Hasan H. Otu;
Khalid Sayood

Publication type:

Article

A divide-and-conquer approach to fragment assembly.

Published in:

Bioinformatics, 2003, v. 19, n. 1, p. 22, doi. 10.1093/bioinformatics/19.1.22

By:

Otu, Hasan H.;
Sayood, Khalid

Publication type:

Article

Bioinformatics approaches to single-cell analysis in developmental biology.

Published in:

Molecular Human Reproduction, 2016, v. 22, n. 3, p. 182, doi. 10.1093/molehr/gav050

By:

Yalcin, Dicle;
Hakguder, Zeynep M.;
Otu, Hasan H.

Publication type:

Article

Correction: Genomic Counter-Stress Changes Induced by the Relaxation Response.

Published in:

2017

By:

Dusek, Jeffery A.;
Otu, Hasan H.;
Wohlhueter, Ann L.;
Bhasin, Manoj;
Zerbini, Luiz F.;
Joseph, Marie G.;
Benson, Herbert;
Libermann, Towia A.

Publication type:

Correction Notice

Neutrophil activation in systemic capillary leak syndrome (Clarkson disease).

Published in:

Journal of Cellular & Molecular Medicine, 2019, v. 23, n. 8, p. 5119, doi. 10.1111/jcmm.14381

By:

Xie, Zhihui;
Kuhns, Douglas B.;
Gu, Xuesong;
Otu, Hasan H.;
Libermann, Towia A.;
Gallin, John I.;
Parikh, Samir M.;
Druey, Kirk M.

Publication type:

Article

Cdc42-Dependent Transfer of mir301 from Breast Cancer-Derived Extracellular Vesicles Regulates the Matrix Modulating Ability of Astrocytes at the Blood–Brain Barrier.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 11, p. 3851, doi. 10.3390/ijms21113851

By:

Morad, Golnaz;
Daisy, Cassandra C.;
Otu, Hasan H.;
Libermann, Towia A.;
Dillon, Simon T.;
Moses, Marsha A.

Publication type:

Article

FQStat: a parallel architecture for very high-speed assessment of sequencing quality metrics.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3015-y

By:

Chanumolu, Sree K.;
Albahrani, Mustafa;
Otu, Hasan H.

Publication type:

Article

Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy.

Published in:

Prostate, 2008, v. 68, n. 14, p. 1517, doi. 10.1002/pros.20803

By:

Haram, Kerstyn M.;
Peltier, Heidi J.;
Lu, Bin;
Bhasin, Manoj;
Otu, Hasan H.;
Choy, Bob;
Regan, Meredith;
Libermann, Towia A.;
Latham, Gary J.;
Sanda, Martin G.;
Arredouani, Mohamed S.

Publication type:

Article

Bayesian network prior: network analysis of biological data using external knowledge.

Published in:

Bioinformatics, 2014, v. 30, n. 6, p. 860, doi. 10.1093/bioinformatics/btt643

By:

Isci, Senol;
Dogan, Haluk;
Ozturk, Cengizhan;
Otu, Hasan H.

Publication type:

Article

Pathway analysis of high-throughput biological data within a Bayesian network framework.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1667, doi. 10.1093/bioinformatics/btr269

By:

Isci, Senol;
Ozturk, Cengizhan;
Jones, Jon;
Otu, Hasan H.

Publication type:

Article

Identifying large-scale interaction atlases using probabilistic graphs and external knowledge.

Published in:

Journal of Clinical & Translational Science, 2022, v. 6, n. 1, p. 1, doi. 10.1017/cts.2022.18

By:

Chanumolu, Sree K.;
Otu, Hasan H.

Publication type:

Article

Gene expression of purified beta-cell tissue obtained from human pancreas with laser capture microdissection.

Published in:

2008

By:

Marselli, Lorella;
Thorne, Jeffrey;
Ahn, Yu-Bae;
Omer, Abdulkadir;
Sgroi, Dennis C;
Libermann, Towia;
Otu, Hasan H;
Sharma, Arun;
Bonner-Weir, Susan;
Weir, Gordon C

Publication type:

journal article

Integrated Multi-Omics Analysis of Cerebrospinal Fluid in Postoperative Delirium.

Published in:

Biomolecules (2218-273X), 2024, v. 14, n. 8, p. 924, doi. 10.3390/biom14080924

By:

Tripp, Bridget A.;
Dillon, Simon T.;
Yuan, Min;
Asara, John M.;
Vasunilashorn, Sarinnapha M.;
Fong, Tamara G.;
Inouye, Sharon K.;
Ngo, Long H.;
Marcantonio, Edward R.;
Xie, Zhongcong;
Libermann, Towia A.;
Otu, Hasan H.

Publication type:

Article

Aptamer-Based Proteomics Measuring Preoperative Cerebrospinal Fluid Protein Alterations Associated with Postoperative Delirium.

Published in:

Biomolecules (2218-273X), 2023, v. 13, n. 9, p. 1395, doi. 10.3390/biom13091395

By:

Dillon, Simon T.;
Vasunilashorn, Sarinnapha M.;
Otu, Hasan H.;
Ngo, Long;
Fong, Tamara;
Gu, Xuesong;
Cavallari, Michele;
Touroutoglou, Alexandra;
Shafi, Mouhsin;
Inouye, Sharon K.;
Xie, Zhongcong;
Marcantonio, Edward R.;
Libermann, Towia A.

Publication type:

Article

Unexpected effects of systemic steroids on the CRSwNP proteome: is protein upregulation more important than inhibition?

Published in:

International Forum of Allergy & Rhinology, 2020, v. 10, n. 3, p. 334, doi. 10.1002/alr.22497

By:

Workman, Alan D.;
Miyake, Michelle M.;
Nocera, Angela L.;
Mueller, Sarina K.;
Finn, Kristen;
Otu, Hasan H.;
Libermann, Towia A.;
Bleier, Benjamin S.

Publication type:

Article

Translating transcription: proteomics in chronic rhinosinusitis with nasal polyps reveals significant discordance with messenger RNA expression.

Published in:

International Forum of Allergy & Rhinology, 2019, v. 9, n. 7, p. 776, doi. 10.1002/alr.22315

By:

Workman, Alan D.;
Nocera, Angela L.;
Mueller, Sarina K.;
Otu, Hasan H.;
Libermann, Towia A.;
Bleier, Benjamin S.

Publication type:

Article

Noninvasive exosomal proteomic biosignatures, including cystatin SN, peroxiredoxin‐5, and glycoprotein VI, accurately predict chronic rhinosinusitis with nasal polyps.

Published in:

International Forum of Allergy & Rhinology, 2019, v. 9, n. 2, p. 177, doi. 10.1002/alr.22226

By:

Mueller, Sarina K.;
Nocera, Angela L.;
Dillon, Simon T.;
Gu, Xuesong;
Wendler, Olaf;
Otu, Hasan H.;
Libermann, Towia A.;
Bleier, Benjamin S.

Publication type:

Article

Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-20

By:

Bakış, Yasin;
Otu, Hasan H.;
Taşçı, Nivart;
Meydan, Cem;
Bilgin, Neş'e;
Yüzbaşıoğlu, Sırrı;
Sezerman, O. Uğur

Publication type:

Article

Prediction of peptides binding to MHC class I and II alleles by temporal motif mining.

Published in:

BMC Bioinformatics, 2013, v. 14, n. Suppl 2, p. 1, doi. 10.1186/1471-2105-14-S2-S13

By:

Meydan, Cem;
Otu, Hasan H.;
Sezerman, Osman Uğur

Publication type:

Article

Clustering of protein families into functionalsubtypes using Relative Complexity Measure withreduced amino acid alphabets.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 428, doi. 10.1186/1471-2105-11-428

By:

Albayrak, Aydin;
Otu, Hasan H.;
Sezerman, Ugur O.

Publication type:

Article

Potential of miRNAs in Plasma Extracellular Vesicle for the Stratification of Prostate Cancer in a South African Population.

Published in:

Cancers, 2023, v. 15, n. 15, p. 3968, doi. 10.3390/cancers15153968

By:

Temilola, Dada Oluwaseyi;
Wium, Martha;
Paccez, Juliano;
Salukazana, Azola Samkele;
Otu, Hasan H.;
Carbone, Giuseppina M.;
Kaestner, Lisa;
Cacciatore, Stefano;
Zerbini, Luiz Fernando

Publication type:

Article

Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-06860-z

By:

Can, Handan;
Chanumolu, Sree K.;
Gonzalez-Muñoz, Elena;
Prukudom, Sukumal;
Otu, Hasan H.;
Cibelli, Jose B.

Publication type:

Article

Targeted metabolomics analysis of postoperative delirium.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80412-z

By:

Tripp, Bridget A.;
Dillon, Simon T.;
Yuan, Min;
Asara, John M.;
Vasunilashorn, Sarinnapha M.;
Fong, Tamara G.;
Metzger, Eran D.;
Inouye, Sharon K.;
Xie, Zhongcong;
Ngo, Long H.;
Marcantonio, Edward R.;
Libermann, Towia A.;
Otu, Hasan H.

Publication type:

Article

Bayesian Pathway Analysis of Cancer Microarray Data.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102803

By:

Korucuoglu, Melike;
Isci, Senol;
Ozgur, Arzucan;
Otu, Hasan H.

Publication type:

Article

Whole Genome Sequence of a Turkish Individual.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0085233

By:

Dogan, Haluk;
Can, Handan;
Otu, Hasan H.

Publication type:

Article

Reprogrammed Transcriptome in Rhesus-Bovine Interspecies Somatic Cell Nuclear Transfer Embryos.

Published in:

PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022197

By:

Kai Wang;
Otu, Hasan H.;
Ying Chen;
Young Lee;
Latham, Keith;
Cibelli1, Jose B.

Publication type:

Article

Sequencing, Analysis, and Annotation of Expressed Sequence Tags for Camelus dromedarius.

Published in:

PLoS ONE, 2010, v. 5, n. 5, p. 1, doi. 10.1371/journal.pone.0010720

By:

Al-Swailem, Abdulaziz M.;
Shehata, Maher M.;
Abu-Duhier, Faisel M.;
Al-Yamani, Essam J.;
Al-Busadah, Khalid A.;
Al-Arawi, Mohammed S.;
Al-Khider, Ali Y.;
Al-Muhaimeed, Abdullah N.;
Al-Qahtani, Fahad H.;
Manee, Manee M.;
Al-Shomrani, Badr M.;
Al-Qhtani, Saad M.;
Al-Harthi, Amer S.;
Akdemir, Kadir C.;
Inan, Mehmet S.;
Otu, Hasan H.

Publication type:

Article

Genomic Counter-Stress Changes Induced by the Relaxation Response.

Published in:

PLoS ONE, 2008, v. 3, n. 7, p. 1, doi. 10.1371/journal.pone.0002576

By:

Dusek, Jeffery A.;
Otu, Hasan H.;
Wohlhueter, Ann L.;
Bhasin, Manoj;
Zerbini, Luiz F.;
Joseph, Marie G.;
Benson, Herbert;
Libermann, Towia A.

Publication type:

Article

Detection of Cancer-Associated Gene Mutations in Urinary Cell-Free DNA among Prostate Cancer Patients in South Africa.

Published in:

Genes, 2023, v. 14, n. 10, p. 1884, doi. 10.3390/genes14101884

By:

Temilola, Dada Oluwaseyi;
Wium, Martha;
Paccez, Juliano;
Salukazana, Azola Samkele;
Rotimi, Solomon O.;
Otu, Hasan H.;
Carbone, Giuseppina M.;
Kaestner, Lisa;
Cacciatore, Stefano;
Zerbini, Luiz Fernando

Publication type:

Article

F5‐01‐04: INFLAMMATION AS A POTENTIAL SHARED MECHANISM FOR POSTOPERATIVE DELIRIUM AND LONG‐TERM COGNITIVE DECLINE IN OLDER ADULTS UNDERGOING MAJOR SURGERY.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2019, v. 15, p. P1607, doi. 10.1016/j.jalz.2019.06.4826

By:

Vasunilashorn, Sarinnapha M.;
Ngo, Long H.;
Dillon, Simon T.;
Otu, Hasan H.;
Tripp, Bridget A.;
Fong, Tamara G.;
Arnold, Steven E.;
Xie, Zhongcong;
Inouye, Sharon K.;
Libermann, Towia A.;
Marcantonio, Edward R.

Publication type:

Article

Proteome-Wide Analysis Using SOMAscan Identifies and Validates Chitinase-3-Like Protein 1 as a Risk and Disease Marker of Delirium Among Older Adults Undergoing Major Elective Surgery.

Published in:

2022

By:

Vasunilashorn, Sarinnapha M;
Dillon, Simon T;
Chan, Noel Y;
Fong, Tamara G;
Joseph, Marie;
Tripp, Bridget;
Xie, Zhongcong;
Ngo, Long H;
Lee, Chun Geun;
Elias, Jack A;
Otu, Hasan H;
Inouye, Sharon K;
Marcantonio, Edward R;
Libermann, Towia A;
Inouye, Sharon

Publication type:

journal article

Development of a Dynamic Multi-Protein Signature of Postoperative Delirium.

Published in:

2019

By:

Vasunilashorn, Sarinnapha M;
Ngo, Long H;
Chan, Noel Y;
Zhou, Wenxiao;
Dillon, Simon T;
Otu, Hasan H;
Inouye, Sharon K;
Wyrobnik, Iris;
Kuchel, George A;
McElhaney, Janet E;
Xie, Zhongcong;
Alsop, David C;
Jones, Richard N;
Libermann, Towia A;
Marcantonio, Edward R

Publication type:

journal article

Distinct and Shared Determinants of Cardiomyocyte Contractility in Multi-Lineage Competent Ethnically Diverse Human iPSCs.

Published in:

Scientific Reports, 2016, p. 37637, doi. 10.1038/srep37637

By:

Tomov, Martin L.;
Olmsted, Zachary T.;
Dogan, Haluk;
Gongorurler, Eda;
Tsompana, Maria;
Otu, Hasan H.;
Buck, Michael;
Chang, Eun-Ah;
Cibelli, Jose;
Paluh, Janet L.

Publication type:

Article

Bioinformatic identification and characterization of human endothelial cell-restricted genes.

Published in:

BMC Genomics, 2010, v. 11, p. 342, doi. 10.1186/1471-2164-11-342

By:

Bhasin, Manoj;
Lei Yuan;
Keskin, Derin B.;
Otu, Hasan H.;
Libermann, Towia A.;
Oettgen, Peter

Publication type:

Article