Works by Orphan, Victoria

Results: 67

Comparison of Archaeal and Bacterial Diversity in Methane Seep Carbonate Nodules and Host Sediments, Eel River Basin and Hydrate Ridge, USA.

Published in:

Microbial Ecology, 2015, v. 70, n. 3, p. 766, doi. 10.1007/s00248-015-0615-6

By:

Mason, Olivia;
Case, David;
Naehr, Thomas;
Lee, Raymond;
Thomas, Randal;
Bailey, Jake;
Orphan, Victoria

Publication type:

Article

Metabolic strategies of marine subseafloor Chloroflexi inferred from genome reconstructions.

Published in:

Environmental Microbiology, 2020, v. 22, n. 8, p. 3188, doi. 10.1111/1462-2920.15061

By:

Fincker, Maeva;
Huber, Julie A.;
Orphan, Victoria J.;
Rappé, Michael S.;
Teske, Andreas;
Spormann, Alfred M.

Publication type:

Article

Microbial interactions in the anaerobic oxidation of methane: model simulations constrained by process rates and activity patterns.

Published in:

Environmental Microbiology, 2019, v. 21, n. 2, p. 631, doi. 10.1111/1462-2920.14507

By:

He, Xiaojia;
Chadwick, Grayson;
Kempes, Christopher;
Shi, Yimeng;
McGlynn, Shawn;
Orphan, Victoria;
Meile, Christof

Publication type:

Article

Widespread nitrogen fixation in sediments from diverse deep‐sea sites of elevated carbon loading.

Published in:

Environmental Microbiology, 2018, v. 20, n. 12, p. 4281, doi. 10.1111/1462-2920.14342

By:

Dekas, Anne E.;
Fike, David A.;
Chadwick, Grayson L.;
Green‐Saxena, Abigail;
Fortney, Julian;
Connon, Stephanie A.;
Dawson, Katherine S.;
Orphan, Victoria J.

Publication type:

Article

Sulfur isotope fractionations constrain the biological cycling of dimethylsulfoniopropionate in the upper ocean.

Published in:

Limnology & Oceanography, 2021, v. 66, n. 10, p. 3607, doi. 10.1002/lno.11901

By:

Osorio‐Rodriguez, Daniela;
Razo‐Mejia, Manuel;
Dalleska, Nathan F.;
Sessions, Alex L.;
Orphan, Victoria J.;
Adkins, Jess F.

Publication type:

Article

A chemosynthetic ecotone—"chemotone"—in the sediments surrounding deep‐sea methane seeps.

Published in:

Limnology & Oceanography, 2021, v. 66, n. 5, p. 1687, doi. 10.1002/lno.11713

By:

Ashford, Oliver S.;
Guan, Shuzhe;
Capone, Dante;
Rigney, Katherine;
Rowley, Katelynn;
Orphan, Victoria;
Mullin, Sean W.;
Dawson, Kat S.;
Cortés, Jorge;
Rouse, Greg W.;
Mendoza, Guillermo F.;
Lee, Raymond W.;
Cordes, Erik E.;
Levin, Lisa A.

Publication type:

Article

Single cell activity reveals direct electron transfer in methanotrophic consortia.

Published in:

Nature, 2015, v. 526, n. 7574, p. 531, doi. 10.1038/nature15512

By:

McGlynn, Shawn E.;
Chadwick, Grayson L.;
Kempes, Christopher P.;
Orphan, Victoria J.

Publication type:

Article

Microbial Cycling of Sulfur and Other Redox‐Sensitive Elements in Porewaters of San Clemente Basin, California, and Cocos Ridge, Costa Rica.

Published in:

Geobiology, 2025, v. 23, n. 1, p. 1, doi. 10.1111/gbi.70013

By:

Osorio‐Rodriguez, Daniela;
Pavia, Frank J.;
Utter, Daniel R.;
Quinan, Matthew;
Landry, Kameko;
Gomes, Maya;
Dalleska, Nathan D.;
Orphan, Victoria J.;
Berelson, William M.;
Adkins, Jess F.

Publication type:

Article

Sulfur cycling at natural hydrocarbon and sulfur seeps in Santa Paula Creek, CA.

Published in:

Geobiology, 2022, v. 20, n. 5, p. 707, doi. 10.1111/gbi.12512

By:

Aronson, Heidi S.;
Monteverde, Danielle R.;
Barnes, Ben Davis;
Johnson, Brooke R.;
Zawaski, Mike J.;
Speth, Daan R.;
Wang, Xingchen Tony;
Wu, Fenfang;
Webb, Samuel M.;
Trower, Elizabeth J.;
Magyar, John S.;
Sessions, Alex L.;
Orphan, Victoria J.;
Fischer, Woodward W.

Publication type:

Article

Microbial succession and dynamics in meromictic Mono Lake, California.

Published in:

Geobiology, 2021, v. 19, n. 4, p. 376, doi. 10.1111/gbi.12437

By:

Phillips, Alexandra A.;
Speth, Daan R.;
Miller, Laurence G.;
Wang, Xingchen T.;
Wu, Fenfang;
Medeiros, Patricia M.;
Monteverde, Danielle R.;
Osburn, Magdalena R.;
Berelson, William M.;
Betts, Hannah L.;
Wijker, Reto S.;
Mullin, Sean W.;
Johnson, Hope A.;
Orphan, Victoria J.;
Fischer, Woodward W.;
Sessions, Alex L.

Publication type:

Article

Carbon isotopic heterogeneity of coenzyme F430 and membrane lipids in methane‐oxidizing archaea.

Published in:

Geobiology, 2019, v. 17, n. 6, p. 611, doi. 10.1111/gbi.12354

By:

Bird, Laurence R.;
Dawson, Katherine S.;
Chadwick, Grayson L.;
Fulton, James M.;
Orphan, Victoria J.;
Freeman, Katherine H.

Publication type:

Article

Patterns of in situ Mineral Colonization by Microorganisms in a ~60°C Deep Continental Subsurface Aquifer.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.536535

By:

Mullin, Sean W.;
Wanger, Greg;
Kruger, Brittany R.;
Sackett, Joshua D.;
Hamilton-Brehm, Scott D.;
Bhartia, Rohit;
Amend, Jan P.;
Moser, Duane P.;
Orphan, Victoria J.

Publication type:

Article

Interrogating marine virus‐host interactions and elemental transfer with BONCAT and nanoSIMS‐based methods.

Published in:

Environmental Microbiology, 2018, v. 20, n. 2, p. 671, doi. 10.1111/1462-2920.13996

By:

Pasulka, Alexis L.;
Thamatrakoln, Kimberlee;
Kopf, Sebastian H.;
Guan, Yunbin;
Poulos, Bonnie;
Moradian, Annie;
Sweredoski, Michael J.;
Hess, Sonja;
Sullivan, Mathew B.;
Bidle, Kay D.;
Orphan, Victoria J.

Publication type:

Article

Microbial eukaryotic distributions and diversity patterns in a deep-sea methane seep ecosystem.

Published in:

Environmental Microbiology, 2016, v. 18, n. 9, p. 3022, doi. 10.1111/1462-2920.13185

By:

Pasulka, Alexis L.;
Levin, Lisa A.;
Steele, Josh A.;
Case, David H.;
Landry, Michael R.;
Orphan, Victoria J.

Publication type:

Article

Farewell Wilfred.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 3429, doi. 10.1111/1462-2920.13076

By:

Timmis, Ken;
Wagner, Michi;
Ramos, Juan Luis;
Jetten, Mike;
Orphan, Victoria;
Polz, Martin;
Bonfante, Paola;
Gilbert, Jack;
Whitaker, Rachel;
Wood, Tom;
Lennon, Jay;
Müller, Volker;
Galperin, Michael

Publication type:

Article

A novel sister clade to the enterobacteria microviruses (family M icroviridae) identified in methane seep sediments.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 3708, doi. 10.1111/1462-2920.12758

By:

Bryson, Samuel Joseph;
Thurber, Andrew R.;
Correa, Adrienne M. S.;
Orphan, Victoria J.;
Vega Thurber, Rebecca

Publication type:

Article

Heavy water and <sup>15</sup> N labelling with Nano SIMS analysis reveals growth rate-dependent metabolic heterogeneity in chemostats.

Published in:

Environmental Microbiology, 2015, v. 17, n. 7, p. 2542, doi. 10.1111/1462-2920.12752

By:

Kopf, Sebastian H.;
McGlynn, Shawn E.;
Green ‐ Saxena, Abigail;
Guan, Yunbin;
Newman, Dianne K.;
Orphan, Victoria J.

Publication type:

Article

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh.

Published in:

Environmental Microbiology, 2014, v. 16, n. 11, p. 3398, doi. 10.1111/1462-2920.12388

By:

Wilbanks, Elizabeth G.;
Jaekel, Ulrike;
Salman, Verena;
Humphrey, Parris T.;
Eisen, Jonathan A.;
Facciotti, Marc T.;
Buckley, Daniel H.;
Zinder, Stephen H.;
Druschel, Gregory K.;
Fike, David A.;
Orphan, Victoria J.

Publication type:

Article

Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea.

Published in:

Environmental Microbiology, 2014, v. 16, n. 10, p. 3012, doi. 10.1111/1462-2920.12247

By:

Dekas, Anne E.;
Chadwick, Grayson L.;
Bowles, Marshall W.;
Joye, Samantha B.;
Orphan, Victoria J.

Publication type:

Article

In situ visualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry.

Published in:

Environmental Microbiology, 2014, v. 16, n. 8, p. 2568, doi. 10.1111/1462-2920.12436

By:

Hatzenpichler, Roland;
Scheller, Silvan;
Tavormina, Patricia L.;
Babin, Brett M.;
Tirrell, David A.;
Orphan, Victoria J.

Publication type:

Article

Geochemical, metagenomic and metaproteomic insights into trace metal utilization by methane-oxidizing microbial consortia in sulphidic marine sediments.

Published in:

Environmental Microbiology, 2014, v. 16, n. 6, p. 1592, doi. 10.1111/1462-2920.12314

By:

Glass, Jennifer B.;
Yu, Hang;
Steele, Joshua A.;
Dawson, Katherine S.;
Sun, Shulei;
Chourey, Karuna;
Pan, Chongle;
Hettich, Robert L.;
Orphan, Victoria J.

Publication type:

Article

Bacterial community shifts in taxa and diversity in response to localized organic loading in the deep sea.

Published in:

Environmental Microbiology, 2010, v. 12, n. 2, p. 344, doi. 10.1111/j.1462-2920.2009.02072.x

By:

Goffredi, Shana K.;
Orphan, Victoria J.

Publication type:

Article

Extensive carbon isotopic heterogeneity among methane seep microbiota.

Published in:

Environmental Microbiology, 2009, v. 11, n. 9, p. 2207, doi. 10.1111/j.1462-2920.2009.01934.x

By:

House, Christopher H.;
Orphan, Victoria J.;
Turk, Kendra A.;
Thomas, Burt;
Pernthaler, Annelie;
Vrentas, Jennifer M.;
Joye, Samantha B.

Publication type:

Article

Patterns of <sup>15</sup>N assimilation and growth of methanotrophic ANME-2 archaea and sulfate-reducing bacteria within structured syntrophic consortia revealed by FISH-SIMS.

Published in:

Environmental Microbiology, 2009, v. 11, n. 7, p. 1777, doi. 10.1111/j.1462-2920.2009.01903.x

By:

Orphan, Victoria J.;
Turk, Kendra A.;
Green, Abigail M.;
House, Christopher H.

Publication type:

Article

Methyl sulfides as intermediates in the anaerobic oxidation of methane.

Published in:

Environmental Microbiology, 2008, v. 10, n. 1, p. 162, doi. 10.1111/j.1462-2920.2007.01441.x

By:

Moran, James J.;
Beal, Emily J.;
Vrentas, Jennifer M.;
Orphan, Victoria J.;
Freeman, Katherine H.;
House, Christopher H.

Publication type:

Article

Evolutionary innovation: a bone-eating marine symbiosis.

Published in:

Environmental Microbiology, 2005, v. 7, n. 9, p. 1369, doi. 10.1111/j.1462-2920.2005.00824.x

By:

Goffredi, Shana K.;
Orphan, Victoria J.;
Rouse, Greg W.;
Jahnke, Linda;
Embaye, Tsegeria;
Turk, Kendra;
Lee, Ray;
Vrijenhoek, Robert C.

Publication type:

Article

Trace Metal Imaging of Sulfate-Reducing Bacteria and Methanogenic Archaea at Single-Cell Resolution by Synchrotron X-Ray Fluorescence Imaging.

Published in:

Geomicrobiology Journal, 2018, v. 35, n. 1, p. 81, doi. 10.1080/01490451.2017.1321068

By:

Glass, Jennifer B.;
Chen, Si;
Dawson, Katherine S.;
Horton, Damian R.;
Vogt, Stefan;
Ingall, Ellery D.;
Twining, Benjamin S.;
Orphan, Victoria J.

Publication type:

Article

Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2023, v. 17, n. 11, p. 2014, doi. 10.1038/s41396-023-01508-8

By:

Candry, Pieter;
Chadwick, Grayson L.;
Caravajal-Arroyo, José Maria;
Lacoere, Tim;
Winkler, Mari-Karoliina Henriikka;
Ganigué, Ramon;
Orphan, Victoria J.;
Rabaey, Korneel

Publication type:

Article

Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 7, p. 1750, doi. 10.1038/s41396-022-01222-x

By:

Speth, Daan R.;
Yu, Feiqiao B.;
Connon, Stephanie A.;
Lim, Sujung;
Magyar, John S.;
Peña-Salinas, Manet E.;
Quake, Stephen R.;
Orphan, Victoria J.

Publication type:

Article

Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 1, p. 168, doi. 10.1038/s41396-021-01047-0

By:

Yu, Hang;
Skennerton, Connor T.;
Chadwick, Grayson L.;
Leu, Andy O.;
Aoki, Masataka;
Tyson, Gene W.;
Orphan, Victoria J.

Publication type:

Article

Experimentally-validated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 2, p. 377, doi. 10.1038/s41396-020-00757-1

By:

Metcalfe, Kyle S.;
Murali, Ranjani;
Mullin, Sean W.;
Connon, Stephanie A.;
Orphan, Victoria J.

Publication type:

Article

Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 4, p. 1030, doi. 10.1038/s41396-020-0590-x

By:

Leu, Andy O.;
Cai, Chen;
McIlroy, Simon J.;
Southam, Gordon;
Orphan, Victoria J.;
Yuan, Zhiguo;
Hu, Shihu;
Tyson, Gene W.

Publication type:

Article

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 5, p. 1269, doi. 10.1038/s41396-018-0343-2

By:

Boyd, Joel A.;
Jungbluth, Sean P.;
Leu, Andy O.;
Evans, Paul N.;
Woodcroft, Ben J.;
Chadwick, Grayson L.;
Orphan, Victoria J.;
Amend, Jan P.;
Rappé, Michael S.;
Tyson, Gene W.

Publication type:

Article

Convergent evolution of unusual complex I homologs with increased proton pumping capacity: energetic and ecological implications.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 11, p. 2668, doi. 10.1038/s41396-018-0210-1

By:

Chadwick, Grayson L.;
Hemp, James;
Fischer, Woodward W.;
Orphan, Victoria J.

Publication type:

Article

Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 9, p. 2022, doi. 10.1038/ismej.2017.68

By:

Terrado, Ramon;
Pasulka, Alexis L;
Lie, Alle A-Y;
Orphan, Victoria J;
Heidelberg, Karla B;
Caron, David A

Publication type:

Article

Phylogenomic analysis of Candidatus 'Izimaplasma' species: free-living representatives from a Tenericutes clade found in methane seeps.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 11, p. 2679, doi. 10.1038/ismej.2016.55

By:

Skennerton, Connor T;
Haroon, Mohamed F;
Briegel, Ariane;
Shi, Jian;
Jensen, Grant J;
Tyson, Gene W;
Orphan, Victoria J

Publication type:

Article

Activity and interactions of methane seep microorganisms assessed by parallel transcription and FISH-NanoSIMS analyses.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 3, p. 678, doi. 10.1038/ismej.2015.145

By:

Dekas, Anne E;
Connon, Stephanie A;
Chadwick, Grayson L;
Trembath-Reichert, Elizabeth;
Orphan, Victoria J

Publication type:

Article

Archaea in metazoan diets: implications for food webs and biogeochemical cycling.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 8, p. 1602, doi. 10.1038/ismej.2012.16

By:

Thurber, Andrew R;
Levin, Lisa A;
Orphan, Victoria J;
Marlow, Jeffrey J

Publication type:

Article

Dimorphism in methane seep-dwelling ecotypes of the largest known bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 12, p. 1926, doi. 10.1038/ismej.2011.66

By:

Bailey, Jake V;
Salman, Verena;
Rouse, Gregory W;
Schulz-Vogt, Heide N;
Levin, Lisa A;
Orphan, Victoria J

Publication type:

Article

Distributions of putative aerobic methanotrophs in diverse pelagic marine environments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 5, p. 700, doi. 10.1038/ismej.2009.155

By:

Tavormina, Patricia L.;
Ussler, III, William;
Joye, Samantha B.;
Harrison, Benjamin K.;
Orphan, Victoria J.

Publication type:

Article

Distributions of putative aerobic methanotrophs in diverse pelagic marine environments.

Published in:

2010

By:

Tavormina, Patricia L;
Ussler, III, William;
Joye, Samantha B.;
Harrison, Benjamin K.;
Orphan, Victoria J.

Publication type:

Correction Notice

The Cell and the Sum of Its Parts: Patterns of Complexity in Biosignatures as Revealed by Deep UV Raman Spectroscopy.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00679

By:

Sapers, Haley M.;
Razzell Hollis, Joseph;
Bhartia, Rohit;
Beegle, Luther W.;
Orphan, Victoria J.;
Amend, Jan P.

Publication type:

Article

Role of APS reductase in biogeochemical sulfur isotope fractionation.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-07878-4

By:

Sim, Min Sub;
Ogata, Hideaki;
Lubitz, Wolfgang;
Adkins, Jess F.;
Sessions, Alex L.;
Orphan, Victoria J.;
McGlynn, Shawn E.

Publication type:

Article

Thermotogota diversity and distribution patterns revealed in Auka and JaichMaa 'ja 'ag hydrothermal vent fields in the Pescadero Basin, Gulf of California.

Published in:

PeerJ, 2024, p. 1, doi. 10.7717/peerj.17724

By:

Peña-Salinas, Manet E.;
Speth, Daan R.;
Utter, Daniel R.;
Spelz, Ronald M.;
Lim, Sujung;
Zierenberg, Robert;
Caress, David W.;
Núñez, Patricia G.;
Vázquez, Roberto;
Orphan, Victoria J.

Publication type:

Article

Metabolic marker gene mining provides insight in global mcrA diversity and, coupled with targeted genome reconstruction, sheds further light on metabolic potential of the Methanomassiliicoccales.

Published in:

PeerJ, 2018, p. 1, doi. 10.7717/peerj.5614

By:

Speth, Daan R.;
Orphan, Victoria J.

Publication type:

Article

Spatially Resolved Electron Transport through Anode-Respiring Geobacter sulfurreducens Biofilms: Controls and Constraints.

Published in:

ChemElectroChem, 2021, v. 8, n. 10, p. 1747, doi. 10.1002/celc.202100111

By:

Xiaojia He;
Chadwick, Grayson;
Jiménez Otero, Fernanda;
Orphan, Victoria;
Meile, Christof

Publication type:

Article

Stable Isotope Phenotyping via Cluster Analysis of NanoSIMS Data As a Method for Characterizing Distinct Microbial Ecophysiologies and Sulfur-Cycling in the Environment.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00774

By:

Dawson, Katherine S.;
Scheller, Silvan;
Dillon, Jesse G.;
Orphan, Victoria J.

Publication type:

Article

Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00563

By:

Marlow, Jeffrey J.;
Skennerton, Connor T.;
Orphan, Victoria J.;
Zhou Li;
Chourey, Karuna;
Hettich, Robert L.;
Chongle Pan

Publication type:

Article

Starvation and recovery in the deep-sea methanotroph M ethyloprofundus sedimenti.

Published in:

Molecular Microbiology, 2017, v. 103, n. 2, p. 242, doi. 10.1111/mmi.13553

By:

Tavormina, Patricia L.;
Kellermann, Matthias Y.;
Antony, Chakkiath Paul;
Tocheva, Elitza I.;
Dalleska, Nathan F.;
Jensen, Ashley J.;
Valentine, David L.;
Hinrichs, Kai ‐ Uwe;
Jensen, Grant J.;
Dubilier, Nicole;
Orphan, Victoria J.

Publication type:

Article

Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2008, v. 2, n. 7, p. 749, doi. 10.1038/ismej.2008.39

By:

Fike, David Andrew;
Gammon, Crystal Lynn;
Ziebis, Wiebke;
Orphan, Victoria Jeanne

Publication type:

Article