Works by Oomens, Jos

Results: 85

Understanding the Structure of Protonated Box Ligands: Insights from Spectroscopy and Computational Studies.

Published in:

Helvetica Chimica Acta, 2025, v. 108, n. 5, p. 1, doi. 10.1002/hlca.202400205

By:

Gorbachev, Vladimir;
van Tetering, Lara;
Martens, Jonathan;
Oomens, Jos;
Berden, Giel;
Tsybizova, Alexandra;
Chen, Peter

Publication type:

Article

Probing the Vibrations of Shared, OH+O-Bound Protons in the Gas Phase.

Published in:

ChemPhysChem, 2004, v. 5, n. 5, p. 740, doi. 10.1002/cphc.200400062

By:

David T. Moore;
Jos Oomens;
Lex van der Meer;
Gert von Helden;
Gerard Meijer;
Jose Valle;
Alan G. Marshall;
John R. Eyler

Publication type:

Article

Investigation of Neighboring Group Participation in 3,4‐Diacetylated Glycosyl Donors in the Gas Phase.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 68, p. 1, doi. 10.1002/chem.202402584

By:

ter Braak, Floor;
Houthuijs, Kas J.;
Elferink, Hidde;
Kromm, Alexandra;
van Wieringen, Teun;
Berden, Giel;
Martens, Jonathan;
Oomens, Jos;
Boltje, Thomas J.

Publication type:

Article

Competing C‐4 and C‐5‐Acyl Stabilization of Uronic Acid Glycosyl Cations.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 63, p. 1, doi. 10.1002/chem.202201724

By:

Elferink, Hidde;
Remmerswaal, Wouter A.;
Houthuijs, Kas J.;
Jansen, Oscar;
Hansen, Thomas;
Rijs, Anouk M.;
Berden, Giel;
Martens, Jonathan;
Oomens, Jos;
Codée, Jeroen D. C.;
Boltje, Thomas J.

Publication type:

Article

Peptide Bond Tautomerization Induced by Divalent Metal Ions: Characterization of the Iminol Configuration.

Published in:

Angewandte Chemie, 2012, v. 124, n. 19, p. 4669, doi. 10.1002/ange.201200437

By:

Dunbar, Robert C.;
Steill, Jeffrey D.;
Polfer, Nicolas C.;
Berden, Giel;
Oomens, Jos

Publication type:

Article

Spectroscopic Evidence for a Triplet Ground State in the Naphthyl Cation.

Published in:

Angewandte Chemie, 2011, v. 123, n. 31, p. 7142, doi. 10.1002/ange.201102333

By:

Alvaro Galué, Héctor;
Oomens, Jos

Publication type:

Article

Controlled Hydrogen-Bond Breaking in a Rotaxane by Discrete Solvation.

Published in:

Angewandte Chemie, 2010, v. 122, n. 23, p. 3988, doi. 10.1002/ange.201001231

By:

Rijs, Anouk M.;
Sändig, Nadja;
Blom, Martine N.;
Oomens, Jos;
Hannam, Jeffrey S.;
Leigh, David A.;
Zerbetto, Francesco;
Buma, Wybren J.

Publication type:

Article

Internal Proton Transfer Leading to Stable Zwitterionic Structures in a Neutral Isolated Peptide.

Published in:

Angewandte Chemie, 2010, v. 122, n. 13, p. 2382, doi. 10.1002/ange.200906503

By:

Rijs, Anouk M.;
Ohanessian, Gilles;
Oomens, Jos;
Meijer, Gerard;
von Helden, Gert;
Compagnon, Isabelle

Publication type:

Article

Characterization of elusive rhamnosyl dioxanium ions and their application in complex oligosaccharide synthesis.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46522-2

By:

Moons, Peter H.;
ter Braak, Floor;
de Kleijne, Frank F. J.;
Bijleveld, Bart;
Corver, Sybren J. R.;
Houthuijs, Kas J.;
Almizori, Hero R.;
Berden, Giel;
Martens, Jonathan;
Oomens, Jos;
White, Paul B.;
Boltje, Thomas J.

Publication type:

Article

Radical‐Pairing Interactions in a Molecular Switch Evidenced by Ion Mobility Spectrometry and Infrared Ion Spectroscopy.

Published in:

Angewandte Chemie International Edition, 2021, v. 60, n. 18, p. 10049, doi. 10.1002/anie.202014728

By:

Hanozin, Emeline;
Mignolet, Benoit;
Martens, Jonathan;
Berden, Giel;
Sluysmans, Damien;
Duwez, Anne‐Sophie;
Stoddart, J. Fraser;
Eppe, Gauthier;
Oomens, Jos;
De Pauw, Edwin;
Morsa, Denis

Publication type:

Article

The Glycosylation Mechanisms of 6,3‐Uronic Acid Lactones.

Published in:

Angewandte Chemie International Edition, 2019, v. 58, n. 26, p. 8746, doi. 10.1002/anie.201902507

By:

Elferink, Hidde;
Mensink, Rens A.;
Castelijns, Wilke W. A.;
Jansen, Oscar;
Bruekers, Jeroen P. J.;
Martens, Jonathan;
Oomens, Jos;
Rijs, Anouk M.;
Boltje, Thomas J.

Publication type:

Article

Novel cerebrospinal fluid biomarkers of glucose transporter type 1 deficiency syndrome: Implications beyond the brain's energy deficit.

Published in:

Journal of Inherited Metabolic Disease, 2023, v. 46, n. 1, p. 66, doi. 10.1002/jimd.12554

By:

Peters, Tessa M. A.;
Merx, Jona;
Kooijman, Pieter C.;
Noga, Marek;
de Boer, Siebolt;
van Gemert, Loes A.;
Salden, Guido;
Engelke, Udo F. H.;
Lefeber, Dirk J.;
van Outersterp, Rianne E.;
Berden, Giel;
Boltje, Thomas J.;
Artuch, Rafael;
Pías‐Peleteiro, Leticia;
García‐Cazorla, Ángeles;
Barić, Ivo;
Thöny, Beat;
Oomens, Jos;
Martens, Jonathan;
Wevers, Ron A.

Publication type:

Article

Unraveling the unknown areas of the human metabolome: the role of infrared ion spectroscopy.

Published in:

Journal of Inherited Metabolic Disease, 2018, v. 41, n. 3, p. 367, doi. 10.1007/s10545-018-0161-8

By:

Martens, Jonathan;
Berden, Giel;
Bentlage, Herman;
Coene, Karlien L. M.;
Engelke, Udo F.;
Wishart, David;
van Scherpenzeel, Monique;
Kluijtmans, Leo A. J.;
Wevers, Ron A.;
Oomens, Jos

Publication type:

Article

Differentiation between Isomeric 4,5-Functionalized 1,2,3-Thiadiazoles and 1,2,3-Triazoles by ESI-HRMS and IR Ion Spectroscopy.

Published in:

Molecules, 2023, v. 28, n. 3, p. 977, doi. 10.3390/molecules28030977

By:

Mazur, Dmitrii M.;
Piacentino, Elettra L.;
Berden, Giel;
Oomens, Jos.;
Ryzhov, Victor;
Bakulev, Vasiliy A.;
Lebedev, Albert T.

Publication type:

Article

2-Methyl-pentanoyl-carnitine (2-MPC): a urine biomarker for patent Ascaris lumbricoides infection.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-72804-y

By:

Lagatie, Ole;
Verheyen, Ann;
Van Asten, Stijn;
Odiere, Maurice R.;
Djuardi, Yenny;
Levecke, Bruno;
Vlaminck, Johnny;
Mekonnen, Zeleke;
Dana, Daniel;
T'Kindt, Ruben;
Sandra, Koen;
van Outersterp, Rianne;
Oomens, Jos;
Lin, Ronghui;
Dillen, Lieve;
Vreeken, Rob;
Cuyckens, Filip;
Stuyver, Lieven J.

Publication type:

Article

Infrared Multiphoton Dissociation Spectroscopic Analysis of Noncovalent Interactions in Organocatalysis.

Published in:

European Journal of Organic Chemistry, 2014, v. 2014, n. 26, p. 5675, doi. 10.1002/ejoc.201402845

By:

Holland, Mareike C.;
Berden, Giel;
Oomens, Jos;
Meijer, Anthony J. H. M.;
Schäfer, Mathias;
Gilmour, Ryan

Publication type:

Article

Enantioselective Complexation of Protonated Tyrosine by a Chiral Crown‐ether: The Nature of the Hydrogen Bonds Makes the Difference.

Published in:

ChemPhysChem, 2025, v. 26, n. 5, p. 1, doi. 10.1002/cphc.202400880

By:

Vo, Kien X.;
Hirata, Keisuke;
Martínez‐Haya, Bruno;
Oomens, Jos;
Ishiuchi, Shun‐ichi;
Fujii, Masaaki;
Zehnacker, Anne

Publication type:

Article

Unravelling the Structure of One‐Electron Oxidation Products of Model Peptide Backbones Containing Methionine by IRMPD Spectroscopy: The Effect of the Neighbouring Groups.

Published in:

ChemPhysChem, 2025, v. 26, n. 4, p. 1, doi. 10.1002/cphc.202400918

By:

Jiang, Yining;
Clavaguéra, Carine;
Lecouvey, Marc;
Houée‐Levin, Chantal;
Martens, Jonathan;
Berden, Giel;
Oomens, Jos;
Scuderi, Debora

Publication type:

Article

Exploring the Scaling Factors for Infrared Modes of PANHs – A Case Study on Cationic 3‐Azafluoranthene⋅+ and Protonated 3‐Azafluoranthene**.

Published in:

ChemPhysChem, 2024, v. 25, n. 16, p. 1, doi. 10.1002/cphc.202300915

By:

Schleier, Domenik;
Kamer, Jerry;
Martens, Jonathan;
Berden, Giel;
Oomens, Jos;
Bouwman, Jordy

Publication type:

Article

Cover Feature: OH Radical‐Induced Oxidation in Nucleosides and Nucleotides Unraveled by Tandem Mass Spectrometry and Infrared Multiple Photon Dissociation Spectroscopy (ChemPhysChem 23/2023).

Published in:

ChemPhysChem, 2023, v. 24, n. 23, p. 1, doi. 10.1002/cphc.202300830

By:

Jiang, Yining;
Clavaguéra, Carine;
Indrajith, Suvasthika;
Houée‐Levin, Chantal;
Berden, Giel;
Oomens, Jos;
Scuderi, Debora

Publication type:

Article

OH Radical‐Induced Oxidation in Nucleosides and Nucleotides Unraveled by Tandem Mass Spectrometry and Infrared Multiple Photon Dissociation Spectroscopy.

Published in:

ChemPhysChem, 2023, v. 24, n. 23, p. 1, doi. 10.1002/cphc.202300534

By:

Jiang, Yining;
Clavaguéra, Carine;
Indrajith, Suvasthika;
Houée‐Levin, Chantal;
Berden, Giel;
Oomens, Jos;
Scuderi, Debora

Publication type:

Article

Low-Frequency CH Stretch Vibrations of Free Alkoxide Ions.

Published in:

Angewandte Chemie International Edition, 2017, v. 56, n. 1, p. 217, doi. 10.1002/anie.201609437

By:

Oomens, Jos;
Berden, Giel;
Morton, Thomas Hellman

Publication type:

Article

Back Cover: Gas-Phase Peptide Structures Unraveled by Far-IR Spectroscopy: Combining IR-UV Ion-Dip Experiments with Born-Oppenheimer Molecular Dynamics Simulations (Angew. Chem. Int. Ed. 14/2014).

Published in:

Angewandte Chemie International Edition, 2014, v. 53, n. 14, p. 3750, doi. 10.1002/anie.201401109

By:

Jaeqx, Sander;
Oomens, Jos;
Cimas, Alvaro;
Gaigeot, Marie‐Pierre;
Rijs, Anouk M.

Publication type:

Article

Gas-Phase Peptide Structures Unraveled by Far-IR Spectroscopy: Combining IR-UV Ion-Dip Experiments with Born-Oppenheimer Molecular Dynamics Simulations.

Published in:

Angewandte Chemie International Edition, 2014, v. 53, n. 14, p. 3663, doi. 10.1002/anie.201311189

By:

Jaeqx, Sander;
Oomens, Jos;
Cimas, Alvaro;
Gaigeot, Marie‐Pierre;
Rijs, Anouk M.

Publication type:

Article

Deamidation reactions of protonated asparagine and glutamine investigated by ion spectroscopy.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2016, v. 30, n. 4, p. 483, doi. 10.1002/rcm.7464

By:

Kempkes, Lisanne J. M.;
Martens, Jonathan K.;
Grzetic, Josipa;
Berden, Giel;
Oomens, Jos

Publication type:

Article

Structural characterization by infrared multiple photon dissociation spectroscopy of protonated gas-phase ions obtained by electrospray ionization of cysteine and dopamine.

Published in:

Analytical & Bioanalytical Chemistry, 2011, v. 399, n. 7, p. 2463, doi. 10.1007/s00216-010-4582-y

By:

Steill, Jeffrey D.;
Szczepanski, Jan;
Oomens, Jos;
Eyler, John R.;
Brajter-Toth, Anna

Publication type:

Article

Spectroscopic Characterization of the Product Ions Formed by Electron Ionization of Adamantane.

Published in:

ChemPhysChem, 2018, v. 19, n. 23, p. 3211, doi. 10.1002/cphc.201800846

By:

Bouwman, Jordy;
Horst, Stefan;
Oomens, Jos

Publication type:

Article

Complexes of Crown Ether Macrocycles with Methyl Guanidinium: Insights into the Capture of Charge in Peptides.

Published in:

ChemPhysChem, 2018, v. 19, n. 17, p. 2169, doi. 10.1002/cphc.201800596

By:

Avilés‐Moreno, Juan Ramón;
Berden, Giel;
Oomens, Jos;
Martínez‐Haya, Bruno

Publication type:

Article

Benchmark Ditopic Binding of Cl− and Cs+ by the Macrocycle Hexacyclen.

Published in:

ChemPhysChem, 2017, v. 18, n. 10, p. 1324, doi. 10.1002/cphc.201700091

By:

Avilés‐Moreno, Juan Ramón;
Berden, Giel;
Oomens, Jos;
Martínez‐Haya, Bruno

Publication type:

Article

Negative Hyperconjugation versus Electronegativity: Vibrational Spectra of Free Fluorinated Alkoxide Ions in the Gas Phase.

Published in:

ChemPhysChem, 2015, v. 16, n. 9, p. 1992, doi. 10.1002/cphc.201500177

By:

Oomens, Jos;
Berden, Giel;
Morton, Thomas Hellman

Publication type:

Article

Probing Protonation Sites of Isolated Flavins Using IR Spectroscopy: From Lumichrome to the Cofactor Flavin Mononucleotide.

Published in:

ChemPhysChem, 2014, v. 15, n. 12, p. 2550, doi. 10.1002/cphc.201402146

By:

Langer, Judith;
Günther, Alan;
Seidenbecher, Sophie;
Berden, Giel;
Oomens, Jos;
Dopfer, Otto

Publication type:

Article

Cations in a Molecular Funnel: Vibrational Spectroscopy of Isolated Cyclodextrin Complexes with Alkali Metals.

Published in:

ChemPhysChem, 2013, v. 14, n. 2, p. 400, doi. 10.1002/cphc.201200810

By:

Gámez, Francisco;
Hurtado, Paola;
Hortal, Ana R.;
Martínez‐Haya, Bruno;
Berden, Giel;
Oomens, Jos

Publication type:

Article

Examination of the Coordination Sphere of AlIII in Trifluoromethyl-Heteroarylalkenolato Complex Ions by Gas-Phase IRMPD Spectroscopy and Computational Modelling.

Published in:

ChemPhysChem, 2012, v. 13, n. 8, p. 2037, doi. 10.1002/cphc.201200132

By:

Brückmann, Lisa;
Tyrra, Wieland;
Mathur, Sanjay;
Berden, Giel;
Oomens, Jos;
Meijer, Anthony J. H. M.;
Schäfer, Mathias

Publication type:

Article

IR Spectroscopy of Isolated Neutral and Protonated Adenine and 9-Methyladenine.

Published in:

ChemPhysChem, 2011, v. 12, n. 10, p. 1921, doi. 10.1002/cphc.201100133

By:

van Zundert, Gydo C. P.;
Jaeqx, Sander;
Berden, Giel;
Bakker, Joost M.;
Kleinermanns, Karl;
Oomens, Jos;
Rijs, Anouk M.

Publication type:

Article

Infrared Spectroscopy of Dioxouranium(V) Complexes with Solvent Molecules: Effect of Reduction.

Published in:

ChemPhysChem, 2008, v. 9, n. 9, p. 1278, doi. 10.1002/cphc.200800034

By:

Groenewold, Gary S.;
Van Stipdonk, Michael J.;
de Jong, Wibe A.;
Oomens, Jos;
Gresham, Garold L.;
McIlwain, Michael E.;
Gao, Da;
Siboulet, Bertrand;
Visscher, Lucas;
Kullman, Michael;
Polfer, Nick

Publication type:

Article

Alkali Metal Complexes of the Dipeptides PheAla and AlaPhe: IRMPD Spectroscopy.

Published in:

ChemPhysChem, 2008, v. 9, n. 4, p. 579, doi. 10.1002/cphc.200700700

By:

Polfer, Nick C.;
Oomens, Jos;
Dunbar, Robert C.

Publication type:

Article

Photolysis-induced scrambling of PAHs as a mechanism for deuterium storage.

Published in:

Astronomy & Astrophysics / Astronomie et Astrophysique, 2020, v. 635, p. 1, doi. 10.1051/0004-6361/201936982

By:

Wiersma, Sandra D.;
Candian, Alessandra;
Bakker, Joost M.;
Martens, Jonathan;
Berden, Giel;
Oomens, Jos;
Buma, Wybren Jan;
Petrignani, Annemieke

Publication type:

Article

High-resolution IR absorption spectroscopy of polycyclic aromatic hydrocarbons in the 3 μm region: role of hydrogenation and alkylation.

Published in:

Astronomy & Astrophysics / Astronomie et Astrophysique, 2018, v. 610, p. 1, doi. 10.1051/0004-6361/201732102

By:

Maltseva, Elena;
Mackie, Cameron J.;
Candian, Alessandra;
Petrignani, Annemieke;
Xinchuan Huang;
Lee, Timothy J.;
Tielens, Alexander G. G. M.;
Oomens, Jos;
Buma, Wybren Jan

Publication type:

Article

Reactivity of Indolylmethylacetates with N, O, and S Soft Nucleophiles: Evidence of 2‐Alkylideneindolenines and 3‐Alkylideneindoleninium Generation by ESI‐MS and IRMPD Spectroscopy.

Published in:

European Journal of Organic Chemistry, 2022, v. 2022, n. 43, p. 1, doi. 10.1002/ejoc.202201166

By:

Arcadi, Antonio;
Berden, Giel;
Ciogli, Alessia;
Corinti, Davide;
Crestoni, Maria Elisa;
De Angelis, Martina;
Fabrizi, Giancarlo;
Goggiamani, Antonella;
Iazzetti, Antonia;
Marrone, Federico;
Marsicano, Vincenzo;
Oomens, Jos;
Serraiocco, Andrea

Publication type:

Article

The Glycosylation Mechanisms of 6,3‐Uronic Acid Lactones.

Published in:

Angewandte Chemie, 2019, v. 131, n. 26, p. 8838, doi. 10.1002/ange.201902507

By:

Elferink, Hidde;
Mensink, Rens A.;
Castelijns, Wilke W. A.;
Jansen, Oscar;
Bruekers, Jeroen P. J.;
Martens, Jonathan;
Oomens, Jos;
Rijs, Anouk M.;
Boltje, Thomas J.

Publication type:

Article

Low-Frequency CH Stretch Vibrations of Free Alkoxide Ions.

Published in:

Angewandte Chemie, 2017, v. 129, n. 1, p. 223, doi. 10.1002/ange.201609437

By:

Oomens, Jos;
Berden, Giel;
Morton, Thomas Hellman

Publication type:

Article

Rücktitelbild: Gas-Phase Peptide Structures Unraveled by Far-IR Spectroscopy: Combining IR-UV Ion-Dip Experiments with Born-Oppenheimer Molecular Dynamics Simulations (Angew. Chem. 14/2014).

Published in:

Angewandte Chemie, 2014, v. 126, n. 14, p. 3824, doi. 10.1002/ange.201401109

By:

Jaeqx, Sander;
Oomens, Jos;
Cimas, Alvaro;
Gaigeot, Marie ‐ Pierre;
Rijs, Anouk M.

Publication type:

Article

Gas-Phase Peptide Structures Unraveled by Far-IR Spectroscopy: Combining IR-UV Ion-Dip Experiments with Born-Oppenheimer Molecular Dynamics Simulations.

Published in:

Angewandte Chemie, 2014, v. 126, n. 14, p. 3737, doi. 10.1002/ange.201311189

By:

Jaeqx, Sander;
Oomens, Jos;
Cimas, Alvaro;
Gaigeot, Marie ‐ Pierre;
Rijs, Anouk M.

Publication type:

Article

Peptide Bond Tautomerization Induced by Divalent Metal Ions: Characterization of the Iminol Configuration.

Published in:

Angewandte Chemie International Edition, 2012, v. 51, n. 19, p. 4591, doi. 10.1002/anie.201200437

By:

Dunbar, Robert C.;
Steill, Jeffrey D.;
Polfer, Nicolas C.;
Berden, Giel;
Oomens, Jos

Publication type:

Article

Spectroscopic Evidence for a Triplet Ground State in the Naphthyl Cation.

Published in:

Angewandte Chemie International Edition, 2011, v. 50, n. 31, p. 7004, doi. 10.1002/anie.201102333

By:

Alvaro Galué, Héctor;
Oomens, Jos

Publication type:

Article

Controlled Hydrogen-Bond Breaking in a Rotaxane by Discrete Solvation.

Published in:

Angewandte Chemie International Edition, 2010, v. 49, n. 23, p. 3896, doi. 10.1002/anie.201001231

By:

Rijs, Anouk M.;
Sändig, Nadja;
Blom, Martine N.;
Oomens, Jos;
Hannam, Jeffrey S.;
Leigh, David A.;
Zerbetto, Francesco;
Buma, Wybren J.

Publication type:

Article

Internal Proton Transfer Leading to Stable Zwitterionic Structures in a Neutral Isolated Peptide.

Published in:

Angewandte Chemie International Edition, 2010, v. 49, n. 13, p. 2332, doi. 10.1002/anie.200906503

By:

Rijs, Anouk M.;
Ohanessian, Gilles;
Oomens, Jos;
Meijer, Gerard;
von Helden, Gert;
Compagnon, Isabelle

Publication type:

Article

Structure of the Observable Histidine Radical Cation in the Gas Phase: A Captodative α-Radical Ion.

Published in:

Angewandte Chemie International Edition, 2008, v. 47, n. 50, p. 9666, doi. 10.1002/anie.200804101

By:

Steill, Jeffrey;
Zhao, Junfang;
Siu, Chi-Kit;
Ke, Yuyong;
Verkerk, Udo H.;
Oomens, Jos;
Dunbar, Robert C.;
Hopkinson, Alan C.;
Siu, K. W. Michael

Publication type:

Article

The Cationic CF.

Published in:

Angewandte Chemie International Edition, 2008, v. 47, n. 11, p. 2106, doi. 10.1002/anie.200704657

By:

Oomens, Jos;
Morton, Thomas Hellman

Publication type:

Article

Identification of Δ-1-pyrroline-5-carboxylate derived biomarkers for hyperprolinemia type II.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03960-2

By:

Merx, Jona;
van Outersterp, Rianne E.;
Engelke, Udo F. H.;
Hendriks, Veronique;
Wevers, Ron A.;
Huigen, Marleen C. D. G.;
Waterval, Huub W. A. H.;
Körver-Keularts, Irene M. L. W.;
Mecinović, Jasmin;
Rutjes, Floris P. J. T.;
Oomens, Jos;
Coene, Karlien L. M.;
Martens, Jonathan;
Boltje, Thomas J.

Publication type:

Article