Works matching AU Oliver, Stephen G.

Results: 129

Metabolic flux analysis for recombinant protein production by Pichia pastoris using dual carbon sources: Effects of methanol feeding rate.

Published in:

Biotechnology & Bioengineering, 2010, v. 105, n. 2, p. 317, doi. 10.1002/bit.22543

By:

Çelik, Eda;
Çalık, Pınar;
Oliver, Stephen G.

Publication type:

Article

High-energy guanine nucleotides as a signal capable of linking growth to cellular energy status via the control of gene transcription.

Published in:

Current Genetics, 2019, v. 65, n. 4, p. 893, doi. 10.1007/s00294-019-00963-1

By:

Hesketh, Andy;
Oliver, Stephen G.

Publication type:

Article

Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes.

Published in:

GigaScience, 2017, v. 6, n. 2, p. 1, doi. 10.1093/gigascience/giw015

By:

Vlastaridis, Panayotis;
Kyriakidou, Pelagia;
Chaliotis, Anargyros;
Van de Peer, Yves;
Oliver, Stephen G.;
Amoutzias, Grigoris D.

Publication type:

Article

Comparative Analysis of SARS-CoV-2 Variants of Concern, Including Omicron, Highlights Their Common and Distinctive Amino Acid Substitution Patterns, Especially at the Spike ORF.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 4, p. N.PAG, doi. 10.3390/v14040707

By:

Nikolaidis, Marios;
Papakyriakou, Athanasios;
Chlichlia, Katerina;
Markoulatos, Panayotis;
Oliver, Stephen G.;
Amoutzias, Grigorios D.

Publication type:

Article

The Remarkable Evolutionary Plasticity of Coronaviruses by Mutation and Recombination: Insights for the COVID-19 Pandemic and the Future Evolutionary Paths of SARS-CoV-2.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 1, p. 78, doi. 10.3390/v14010078

By:

Amoutzias, Grigorios D.;
Nikolaidis, Marios;
Tryfonopoulou, Eleni;
Chlichlia, Katerina;
Markoulatos, Panayotis;
Oliver, Stephen G.

Publication type:

Article

A proposed framework for the description of plant metabolomics experiments and their results.

Published in:

Nature Biotechnology, 2004, v. 22, n. 12, p. 1601, doi. 10.1038/nbt1041

By:

Jenkins, Helen;
Hardy, Nigel;
Beckmann, Manfred;
Draper, John;
Smith, Aileen R.;
Taylor, Janet;
Fiehn, Oliver;
Goodacre, Royston;
Bino, Raoul J.;
Hall, Robert;
Kopka, Joachim;
Lane, Geoffrey A.;
Lange, B. Markus;
Liu, Jang R.;
Mendes, Pedro;
Nikolau, Basil J.;
Oliver, Stephen G.;
Paton, Norman W.;
Rhee, Sue;
Roessner-Tunali, Ute

Publication type:

Article

A common open representation of mass spectrometry data and its application to proteomics research.

Published in:

Nature Biotechnology, 2004, v. 22, n. 11, p. 1459, doi. 10.1038/nbt1031

By:

Pedrioli, Patrick G. A.;
Eng, Jimmy K.;
Hubley, Robert;
Vogelzang, Mathijs;
Deutsch, Eric W.;
Raught, Brian;
Pratt, Brian;
Nilsson, Erik;
Angeletti, Ruth H.;
Apweiler, Rolf;
Cheung, Kei;
Costello, Catherine E.;
Hermjakob, Henning;
Huang, Sequin;
Julian, Randall K.;
Kapp, Eugene;
McComb, Mark E.;
Oliver, Stephen G;
Omenn, Gilbert;
Paton, Norman W.

Publication type:

Article

High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.

Published in:

Nature Biotechnology, 2003, v. 21, n. 6, p. 692, doi. 10.1038/nbt823

By:

Allen, Jess;
Davey, Hazel M;
Broadhurst, David;
Heald, Jim K;
Rowland, Jem J;
Oliver, Stephen G;
Kell, Douglas B

Publication type:

Article

A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations.

Published in:

Nature Biotechnology, 2001, v. 19, n. 1, p. 45, doi. 10.1038/83496

By:

Raamsdonk, Léonie M.;
Teusink, Bas;
Broadhurst, David;
Zhang, Nianshu;
Hayes, Andrew;
Walsh, Michael C.;
Berden, Jan A.;
Brindle, Kevin M.;
Kell, Douglas B.;
Rowland, Jem J.;
Westerhoff, Hans V.;
van Dam, Karel;
Oliver, Stephen G.

Publication type:

Article

Model organism databases: essential resources that need the support of both funders and users.

Published in:

BMC Biology, 2016, v. 14, p. 1, doi. 10.1186/s12915-016-0276-z

By:

Oliver, Stephen G.;
Lock, Antonia;
Harris, Midori A.;
Nurse, Paul;
Wood, Valerie

Publication type:

Article

Copy-number variation of cancer-gene orthologs is sufficient to induce cancer-like symptoms in Saccharomyces cerevisiae.

Published in:

BMC Biology, 2013, v. 11, n. 1, p. 1, doi. 10.1186/1741-7007-11-24

By:

de Clare, Michaela;
Oliver, Stephen G.

Publication type:

Article

Metabolic footprinting and systems biology: the medium is the message.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 7, p. 557, doi. 10.1038/nrmicro1177

By:

Kell, Douglas B.;
Brown, Marie;
Davey, Hazel M.;
Dunn, Warwick B.;
Spasic, Irena;
Oliver, Stephen G.

Publication type:

Article

Proteomic response to amino acid starvation inCandida albicans and Saccharomyces cerevisiae.

Published in:

Proteomics, 2004, v. 4, n. 8, p. 2425, doi. 10.1002/pmic.200300760

By:

Zhikang Yin;
David Stead;
Laura Selway;
Janet Walker;
Isabel Riba-Garcia;
Tracey Mclnerney;
Simon Gaskell;
Stephen G. Oliver;
Philip Cash;
Alistair J. P. Brown

Publication type:

Article

Stable isotope labelling in vivo as an aid to protein identification in peptide mass fingerprinting.

Published in:

Proteomics, 2002, v. 2, n. 2, p. 157, doi. 10.1002/1615-9861(200202)2:2<157::AID-PROT157>3.0.CO;2-M

By:

Pratt, Julie M.;
Robertson, Duncan H. L.;
Gaskell, Simon J.;
Riba-Garcia, Isabel;
Hubbard, Simon J.;
Sidhu, Khushwant;
Oliver, Stephen G.;
Butler, Philip;
Hayes, Andrew;
Petty, June;
Beynon, Robert J.

Publication type:

Article

Bioinformatic assessment of mass spectrometric chemical derivatisation techniques for proteome database searching.

Published in:

Proteomics, 2001, v. 1, n. 11, p. 1368, doi. 10.1002/1615-9861(200111)1:11<1368::AID-PROT1368>3.0.CO;2-U

By:

Sidhu, Khushwant S.;
Sangvanich, Polkit;
Brancia, Francesco L.;
Sullivan, Anthony G.;
Gaskell, Simon J.;
Wolkenhauer, Olaf;
Oliver, Stephen G.;
Hubbard, Simon J.

Publication type:

Article

Chromatographic separations as a prelude to two-dimensional electrophoresis in proteomics analysis.

Published in:

Proteomics, 2001, v. 1, n. 1, p. 42, doi. 10.1002/1615-9861(200101)1:1<42::AID-PROT42>3.0.CO;2-J

By:

Butt, Amna;
Davison, Matthew D.;
Smith, Graeme J.;
Young, Janice A.;
Gaskell, Simon J.;
Oliver, Stephen G.;
Beynon, Robert J.

Publication type:

Article

Enhancing the functionality of a microscale bioreactor system as an industrial process development tool for mammalian perfusion culture.

Published in:

Biotechnology & Bioengineering, 2019, v. 116, n. 6, p. 1315, doi. 10.1002/bit.26946

By:

Sewell, David J;
Turner, Richard;
Field, Ray;
Holmes, William;
Pradhan, Rahul;
Spencer, Christopher;
Oliver, Stephen G;
Slater, Nigel KH;
Dikicioglu, Duygu

Publication type:

Article

Extension of the yeast metabolic model to include iron metabolism and its use to estimate global levels of iron‐recruiting enzyme abundance from cofactor requirements.

Published in:

Biotechnology & Bioengineering, 2019, v. 116, n. 3, p. 610, doi. 10.1002/bit.26905

By:

Dikicioglu, Duygu;
Oliver, Stephen G.

Publication type:

Article

Process development for the continuous production of heterologous proteins by the industrial yeast, Komagataella phaffii.

Published in:

Biotechnology & Bioengineering, 2018, v. 115, n. 12, p. 2962, doi. 10.1002/bit.26846

By:

Cankorur‐Cetinkaya, Ayca;
Narraidoo, Nathalie;
Kasavi, Ceyda;
Slater, Nigel K.H.;
Archer, David B.;
Oliver, Stephen G.

Publication type:

Article

Metabolic modeling to identify engineering targets for Komagataella phaffii: The effect of biomass composition on gene target identification.

Published in:

Biotechnology & Bioengineering, 2017, v. 114, n. 11, p. 2605, doi. 10.1002/bit.26380

By:

Cankorur‐Cetinkaya, Ayca;
Dikicioglu, Duygu;
Oliver, Stephen G.

Publication type:

Article

Chance and necessity in the evolution of minimal metabolic networks.

Published in:

Nature, 2006, v. 440, n. 7084, p. 667, doi. 10.1038/nature04568

By:

Pál, Csaba;
Papp, Balázs;
Lercher, Martin J.;
Csermely, Péter;
Oliver, Stephen G.;
Hurst, Laurence D.

Publication type:

Article

Functional genomic hypothesis generation and experimentation by a robot scientist.

Published in:

Nature, 2004, v. 427, n. 6971, p. 247, doi. 10.1038/nature02236

By:

King, Ross D.;
Whelan, Kenneth E.;
Jones, Ffion M.;
Reiser, Philip G. K.;
Bryant, Christopher H.;
Muggleton, Stephen H.;
Kell, Douglas B.;
Oliver, Stephen G.

Publication type:

Article

Glycosylation deficiency phenotypes resulting from depletion of GDP-mannose pyrophosphorylase in two yeast species.

Published in:

Molecular Microbiology, 2000, v. 36, n. 5, p. 1156, doi. 10.1046/j.1365-2958.2000.01944.x

By:

Warit, Saradee;
Zhang, Nianshu;
Short, Andrea;
Walmsley, Richard M.;
Oliver, Stephen G.;
Stateva, Lubomira I.

Publication type:

Article

PomBase: a comprehensive online resource for fission yeast.

Published in:

Nucleic Acids Research, 2012, p. D695, doi. 10.1093/nar/gkr853

By:

Wood, Valerie;
Harris, Midori A.;
McDowall, Mark D.;
Rutherford, Kim;
Vaughan, Brendan W.;
Staines, Daniel M.;
Aslett, Martin;
Lock, Antonia;
Bähler, Jürg;
Kersey, Paul J.;
Oliver, Stephen G.

Publication type:

Article

ISPIDER Central: an integrated database web-server for proteomics.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W485, doi. 10.1093/nar/gkn196

By:

Siepen, Jennifer A.;
Belhajjame, Khalid;
Selley, Julian N.;
Embury, Suzanne M.;
Paton, Norman W.;
Goble, Carole A.;
Oliver, Stephen G.;
Stevens, Robert;
Zamboulis, Lucas;
Martin, Nigel;
Poulovassillis, Alexandra;
Jones, Philip;
Côté, Richard;
Hermjakob, Henning;
Pentony, Melissa M.;
Jones, David T.;
Orengo, Christine A.;
Hubbard, Simon J.

Publication type:

Article

A model‐based analysis of microarray experimental error and normalisation.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 16, p. e96, doi. 10.1093/nar/gng097

By:

Fang, Yongxiang;
Brass, Andrew;
Hoyle, David C.;
Hayes, Andrew;
Bashein, Abdulla;
Oliver, Stephen G.;
Waddington, David;
Rattray, Magnus

Publication type:

Article

SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3572, doi. 10.1093/nar/gkg511

By:

Boardman, Paul E.;
Oliver, Stephen G.;
Hubbard, Simon J.

Publication type:

Article

GIMS: an integrated data storage and analysis environment for genomic and functional data.

Published in:

Yeast, 2003, v. 20, n. 15, p. 1291, doi. 10.1002/yea.1047

By:

Michael Cornell;
Norman W. Paton;
Cornelia Hedeler;
Paul Kirby;
Daniela Delneri;
Andrew Hayes;
Stephen G. Oliver

Publication type:

Article

An improved tetO promoter replacement system for regulating the expression of yeast genes.

Published in:

Yeast, 2003, v. 20, n. 15, p. 1255, doi. 10.1002/yea.1037

By:

Kuangyu Yen;
Paul Gitsham;
Jill Wishart;
Stephen G. Oliver;
Nianshu Zhang

Publication type:

Article

Tools for the study of genome rearrangements in laboratory and industrial yeast strains.

Published in:

Yeast, 2002, v. 19, n. 5, p. 441, doi. 10.1002/yea.852

By:

Lockhart, Lesley;
Oliver, Stephen G.;
Delneri, Daniela

Publication type:

Article

A new family of yeast vectors and S288C-derived strains for the systematic analysis of gene function.

Published in:

Yeast, 2001, v. 18, n. 6, p. 563, doi. 10.1002/yea.703

By:

Tomlin, Gregory C.;
Wixon, Joanne L.;
Bolotin-Fukuhara, Monique;
Oliver, Stephen G.

Publication type:

Article

Functional Analysis of six novel ORFs on the left arm of Chromosome XII of Saccharomyces cerevisiae reveals three of them responding to S-starvation.

Published in:

Yeast, 2001, v. 18, n. 4, p. 325, doi. 10.1002/1097-0061(20010315)18:4<325::AID-YEA669>3.0.CO;2-K

By:

Zhang, Nianshu;
Merlotti, Cristina;
Wu, Jian;
Ismail, Thamir;
El-Moghazy, Abdel-Nasser;
Ahmed Khan, Shakeel;
Butt, Amna;
Gardner, David C. J.;
Sims, Paul F. G.;
Oliver, Stephen G.

Publication type:

Article

Functional analysis of eight open reading frames on chromosomes XII and XIV of Saccharomyces cerevisiae.

Published in:

Yeast, 2000, v. 16, n. 16, p. 1457, doi. 10.1002/1097-0061(200012)16:16<1457::AID-YEA635>3.0.CO;2-3

By:

Ahmed Khan, Shakeel;
Zhang, Nianshu;
Ismail, Thamir;
El-Moghazy, Abdel-Nasser;
Butt, Amna;
Wu, Jian;
Merlotti, Cristina;
Hayes, Andrew;
Gardner, David C. J.;
Oliver, Stephen G.

Publication type:

Article

Functional analysis of six novel ORFs on the left arm of Chromosome XII in Saccharomyces cerevisiae reveals two essential genes, one of which is under cell-cycle control.

Published in:

Yeast, 2000, v. 16, n. 3, p. 277, doi. 10.1002/(SICI)1097-0061(200002)16:3<277::AID-YEA524>3.0.CO;2-G

By:

El-Moghazy, Abdel-Nasser;
Zhang, Nianshu;
Ismail, Thamir;
Wu, Jian;
Butt, Amna;
Ahmed Khan, Shakeel;
Merlotti, Cristina;
Cara Woodwark, K.;
Gardner, David C. J.;
Gaskell, Simon J.;
Oliver, Stephen G.

Publication type:

Article

Disruption of seven hypothetical aryl alcohol dehydrogenase genes from Saccharomyces cerevisiae and construction of a multiple knock-out strain.

Published in:

Yeast, 1999, v. 15, n. 15, p. 1681, doi. 10.1002/(SICI)1097-0061(199911)15:15<1681::AID-YEA486>3.0.CO;2-A

By:

Delneri, Daniela;
Gardner, David C. J.;
Bruschi, Carlo V.;
Oliver, Stephen G.

Publication type:

Article

Disruption of six novel ORFs on the left arm of chromosome XII reveals one gene essential for vegetative growth of Saccharomyces cerevisiae.

Published in:

Yeast, 1999, v. 15, n. 12, p. 1287, doi. 10.1002/(SICI)1097-0061(19990915)15:12<1287::AID-YEA458>3.0.CO;2-S

By:

Zhang, Nianshu;
Ismail, Thamir;
Wu, Jian;
Woodwark, K. Cara;
Gardner, David C. J.;
Walmsley, Richard M.;
Oliver, Stephen G.

Publication type:

Article

Transcript analysis of 250 novel yeast genes from chromosome XIV.

Published in:

Yeast, 1999, v. 15, n. 4, p. 329, doi. 10.1002/(SICI)1097-0061(19990315)15:4<329::AID-YEA360>3.0.CO;2-C

By:

Planta, Rudi J.;
Brown, Alistair J. P.;
Cadahia, Jose L.;
Esperanza Cerdan, M.;
De Jonge, Martine;
Gent, Manda E.;
Hayes, Andrew;
Kolen, Carin P. A. M.;
Lombardia, Luis J.;
Sefton, Mark;
Oliver, Stephen G.;
Thevelein, Johan;
Tournu, Helene;
van Delft, Yvon J.;
Verbart, Dennis J.;
Winderickx, Joris

Publication type:

Article

Quantitative analysis of yeast gene function using competition experiments in continuous culture.

Published in:

Yeast, 1998, v. 14, n. 15, p. 1417, doi. 10.1002/(SICI)1097-0061(199811)14:15<1417::AID-YEA334>3.0.CO;2-N

By:

Baganz, Frank;
Hayes, Andrew;
Farquhar, Ronnie;
Butler, Philip R.;
Gardner, David C. J.;
Oliver, Stephen G.

Publication type:

Article

The maintenance of self-replicating plasmids in Saccharomyces cerevisiae: Mathematical modelling, computer simulations and experimental tests.

Published in:

Yeast, 1995, v. 11, n. 7, p. 641, doi. 10.1002/yea.320110705

By:

Van Der Sand, Sueli T.;
Greenhalf, William;
Gardner, David C. J.;
Oliver, Stephen G.

Publication type:

Article

XI. Yeast sequencing reports. Sequence analysis of a 3·5 kb EcoRI fragment from the left arm of Saccharomyces cerevisiae chromosome XI reveals the location of the MBR1 gene and a sequence related to a GTPase-activating protein.

Published in:

Yeast, 1994, v. 10, n. 2, p. 257, doi. 10.1002/yea.320100212

By:

James, Carolyn M.;
Gent, Manda E.;
Oliver, Stephen G.

Publication type:

Article

XI. Yeast sequencing reports. Sequence analysis of a 10 kb fragment of yeast chromosome XI identifies the SMY1 locus and reveals sequences related to a pre-mRNA splicing factor and vacuolar ATPase subunit C plus a number of unidentified open reading frames

Published in:

Yeast, 1994, v. 10, n. 2, p. 247, doi. 10.1002/yea.320100211

By:

James, Carolyn M.;
Gent, Manda E.;
Indge, Keith J.;
Oliver, Stephen G.

Publication type:

Article

A physical comparison of chromosome III in six strains of Saccharomyces cerevisiae.

Published in:

Yeast, 1994, v. 10, n. 1, p. 39, doi. 10.1002/yea.320100105

By:

Wicksteed, Barton L.;
Collins, Irene;
Dershowitz, Ann;
Stateva, Lubomira I.;
Green, Rebecca P.;
Oliver, Stephen G.;
Brown, Alistair J. P.;
Newlon, Carol S.

Publication type:

Article

Treatment of yeast cells with wall lytic enzymes is not required to prepare chromosomes for pulsed-field gel analysis.

Published in:

Yeast, 1993, v. 9, n. 10, p. 1053, doi. 10.1002/yea.320091003

By:

Gardner, David C. J.;
Heale, Shaun M.;
Stateva, Lubomira I.;
Oliver, Stephen G.

Publication type:

Article

Physical separation and functional interaction of Kluyveromyces lactis and Saccharomyces cerevisiae ARS elements derived from killer plasmid DNA.

Published in:

Yeast, 1986, v. 2, n. 3, p. 179, doi. 10.1002/yea.320020306

By:

Thompson, Arthur;
Oliver, Stephen G.

Publication type:

Article

Xth international specialized symposium on yeasts.

Published in:

Yeast, 1986, v. 2, n. 1, p. 69, doi. 10.1002/yea.320020106

By:

Oliver, Stephen G.

Publication type:

Article

An integrated approach to characterize genetic interaction networks in yeast metabolism.

Published in:

Nature Genetics, 2011, v. 43, n. 7, p. 656, doi. 10.1038/ng.846

By:

Szappanos, Balázs;
Kovács, Károly;
Szamecz, Béla;
Honti, Frantisek;
Costanzo, Michael;
Baryshnikova, Anastasia;
Gelius-Dietrich, Gabriel;
Lercher, Martin J.;
Jelasity, Márk;
Myers, Chad L.;
Andrews, Brenda J.;
Boone, Charles;
Oliver, Stephen G.;
Pál, Csaba;
Papp, Balázs

Publication type:

Article

Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures.

Published in:

Nature Genetics, 2008, v. 40, n. 1, p. 113, doi. 10.1038/ng.2007.49

By:

Delneri, Daniela;
Hoyle, David C.;
Gkargkas, Konstantinos;
Cross, Emma J. M.;
Rash, Bharat;
Zeef, Leo;
Hui-Sun Leong;
Davey, Hazel M.;
Hayes, Andrew;
Kell, Douglas B.;
Griffith, Gareth W.;
Oliver, Stephen G.

Publication type:

Article

Robust normalization of microarray data over multiple experiments.

Published in:

1999

By:

Morrison, Norman;
Rattray, Magnus;
Brutsche, Martin;
Oliver, Stephen G.;
Hayes, Andrew;
Zhang, Nianshu;
Penkett, Chris;
Lockey, Jacqui;
Rao, Sudha;
Hayes, Ian;
Jupp, Ray;
Brass, Andy

Publication type:

Abstract

Antiplasmodial and trypanocidal activity of violacein and deoxyviolacein produced from synthetic operons.

Published in:

BMC Biotechnology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12896-018-0428-z

By:

Bilsland, Elizabeth;
Tavella, Tatyana A.;
Krogh, Renata;
Stokes, Jamie E.;
Roberts, Annabelle;
Ajioka, James;
Spring, David R.;
Andricopulo, Adriano D.;
Costa, Fabio T. M.;
Oliver, Stephen G.

Publication type:

Article

The Yeast GSK-3 Homologue Mck1 Is a Key Controller of Quiescence Entry and Chronological Lifespan.

Published in:

PLoS Genetics, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.pgen.1005282

By:

Quan, Zhenzhen;
Cao, Lu;
Tang, Yingzhi;
Yan, Yanchun;
Oliver, Stephen G.;
Zhang, Nianshu

Publication type:

Article