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Effectiveness of mRNA Booster Vaccine Against Coronavirus Disease 2019 Infection and Severe Outcomes Among Persons With and Without Immune Dysfunction: A Retrospective Cohort Study of National Electronic Medical Record Data in the United States.
Published in:
Open Forum Infectious Diseases, 2024, v. 11, n. 2, p. 1, doi. 10.1093/ofid/ofae019
By:
- Sun, Jing;
- Zheng, Qulu;
- Anzalone, Alfred J;
- Abraham, Alison G;
- Olex, Amy L;
- Zhang, Yifan;
- Mathew, Jomol;
- Safdar, Nasia;
- Haendel, Melissa A;
- Segev, Dorry;
- Islam, Jessica Y;
- Singh, Jasvinder A;
- Mannon, Roslyn B;
- Chute, Christopher G;
- Patel, Rena C;
- Kirk, Gregory D
Publication type:
Article
Association Between Immune Dysfunction and COVID-19 Breakthrough Infection After SARS-CoV-2 Vaccination in the US.
Published in:
2022
By:
- Sun, Jing;
- Zheng, Qulu;
- Madhira, Vithal;
- Olex, Amy L.;
- Anzalone, Alfred J.;
- Vinson, Amanda;
- Singh, Jasvinder A.;
- French, Evan;
- Abraham, Alison G.;
- Mathew, Jomol;
- Safdar, Nasia;
- Agarwal, Gaurav;
- Fitzgerald, Kathryn C.;
- Singh, Namrata;
- Topaloglu, Umit;
- Chute, Christopher G.;
- Mannon, Roslyn B.;
- Kirk, Gregory D.;
- Patel, Rena C.;
- National COVID Cohort Collaborative (N3C) Consortium
Publication type:
journal article
Characterizing the efficacy of cancer therapeutics in patient-derived xenograft models of metastatic breast cancer.
Published in:
Breast Cancer Research & Treatment, 2018, v. 170, n. 2, p. 221, doi. 10.1007/s10549-018-4748-4
By:
- Turner, Tia H.;
- Alzubi, Mohammad A.;
- Sohal, Sahib S.;
- Olex, Amy L.;
- Dozmorov, Mikhail G.;
- Harrell, J. Chuck
Publication type:
Article
The Intersections of COVID-19, HIV, and Race/Ethnicity: Machine Learning Methods to Identify and Model Risk Factors for Severe COVID-19 in a Large U.S. National Dataset.
Published in:
AIDS & Behavior, 2024, v. 28, p. 5, doi. 10.1007/s10461-024-04266-6
By:
- Kunz, Miranda;
- Rott, Kollin W.;
- Hurwitz, Eric;
- Kunisaki, Ken;
- Sun, Jing;
- Wilkins, Kenneth J.;
- Islam, Jessica Y.;
- Patel, Rena;
- Safo, Sandra E.;
- Wilcox, Adam B.;
- Lee, Adam M.;
- Graves, Alexis;
- Anzalone, Alfred;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E.;
- Southerland, Andrew;
- Girvin, Andrew T.
Publication type:
Article
Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-32568-7
By:
- Dozmorov, Mikhail G.;
- Marshall, Maggie A.;
- Rashid, Narmeen S.;
- Grible, Jacqueline M.;
- Valentine, Aaron;
- Olex, Amy L.;
- Murthy, Kavita;
- Chakraborty, Abhijit;
- Reyna, Joaquin;
- Figueroa, Daniela Salgado;
- Hinojosa-Gonzalez, Laura;
- Da-Inn Lee, Erika;
- Baur, Brittany A.;
- Roy, Sushmita;
- Ay, Ferhat;
- Harrell, J. Chuck
Publication type:
Article
Publisher Correction: Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-33284-y
By:
- Dozmorov, Mikhail G.;
- Marshall, Maggie A.;
- Rashid, Narmeen S.;
- Grible, Jacqueline M.;
- Valentine, Aaron;
- Olex, Amy L.;
- Murthy, Kavita;
- Chakraborty, Abhijit;
- Reyna, Joaquin;
- Figueroa, Daniela Salgado;
- Hinojosa-Gonzalez, Laura;
- Da-Inn Lee, Erika;
- Baur, Brittany A.;
- Roy, Sushmita;
- Ay, Ferhat;
- Harrell, J. Chuck
Publication type:
Article
Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-32568-7
By:
- Dozmorov, Mikhail G.;
- Marshall, Maggie A.;
- Rashid, Narmeen S.;
- Grible, Jacqueline M.;
- Valentine, Aaron;
- Olex, Amy L.;
- Murthy, Kavita;
- Chakraborty, Abhijit;
- Reyna, Joaquin;
- Figueroa, Daniela Salgado;
- Hinojosa-Gonzalez, Laura;
- Da-Inn Lee, Erika;
- Baur, Brittany A.;
- Roy, Sushmita;
- Ay, Ferhat;
- Harrell, J. Chuck
Publication type:
Article
Transcriptomic changes underlying EGFR inhibitor resistance in human and mouse models of basal-like breast cancer.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-25541-3
By:
- Rashid, Narmeen S.;
- Boyd, David C.;
- Olex, Amy L.;
- Grible, Jacqueline M.;
- Duong, Alex K.;
- Alzubi, Mohammad A.;
- Altman, Julia E.;
- Leftwich, Tess J.;
- Valentine, Aaron D.;
- Hairr, Nicole S.;
- Zboril, Emily K.;
- Smith Jr., Timothy M.;
- Pfefferle, Adam D.;
- Dozmorov, Mikhail G.;
- Harrell, J. Chuck
Publication type:
Article
Vaccination Against SARS-CoV-2 Decreases Risk of Adverse Events in Patients who Develop COVID-19 Following Cancer Surgery.
Published in:
2023
By:
- Verhagen, Nathaniel B.;
- Koerber, Nicolas K.;
- Szabo, Aniko;
- Taylor, Bradley;
- Wainaina, J. Njeri;
- Evans, Douglas B.;
- Kothari, Anai N.;
- Wilcox, Adam B.;
- Lee, Adam M.;
- Graves, Alexis;
- Anzalone, Alfred;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E.;
- Southerland, Andrew;
- Girvin, Andrew T.;
- Walden, Anita;
- Sharathkumar, Anjali A.
Publication type:
Letter
Dynamics of dendritic cell maturation are identified through a novel filtering strategy applied to biological time-course microarray replicates.
Published in:
BMC Immunology, 2010, v. 11, p. 41, doi. 10.1186/1471-2172-11-41
By:
- Olex, Amy L.;
- Hiltbold, Elizabeth M.;
- Xiaoyan Leng;
- Fetrow, Jacquelyn S.
Publication type:
Article
Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines.
Published in:
GigaScience, 2021, v. 10, n. 4, p. 1, doi. 10.1093/gigascience/giab022
By:
- Dozmorov, Mikhail G;
- Tyc, Katarzyna M;
- Sheffield, Nathan C;
- Boyd, David C;
- Olex, Amy L;
- Reed, Jason;
- Harrell, J Chuck
Publication type:
Article
Disease Progression and Phasic Changes in Gene Expression in a Mouse Model of Osteoarthritis.
Published in:
PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054633
By:
- Loeser, Richard F.;
- Olex, Amy L.;
- McNulty, Margaret A.;
- Carlson, Cathy S.;
- Callahan, Michael;
- Ferguson, Cristin;
- Fetrow, Jacquelyn S.;
- Rannou, Francois
Publication type:
Article
The human intermediate prolactin receptor is a mammary proto-oncogene.
Published in:
NPJ Breast Cancer, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41523-021-00243-7
By:
- Grible, Jacqueline M.;
- Zot, Patricija;
- Olex, Amy L.;
- Hedrick, Shannon E.;
- Harrell, J. Chuck;
- Woock, Alicia E.;
- Idowu, Michael O.;
- Clevenger, Charles V.
Publication type:
Article
Stratification of Tamoxifen Synergistic Combinations for the Treatment of ER+ Breast Cancer.
Published in:
Cancers, 2023, v. 15, n. 12, p. 3179, doi. 10.3390/cancers15123179
By:
- Zboril, Emily K.;
- Grible, Jacqueline M.;
- Boyd, David C.;
- Hairr, Nicole S.;
- Leftwich, Tess J.;
- Esquivel, Madelyn F.;
- Duong, Alex K.;
- Turner, Scott A.;
- Ferreira-Gonzalez, Andrea;
- Olex, Amy L.;
- Sartorius, Carol A.;
- Dozmorov, Mikhail G.;
- Harrell, J. Chuck
Publication type:
Article
Discovering Synergistic Compounds with BYL-719 in PI3K Overactivated Basal-like PDXs.
Published in:
Cancers, 2023, v. 15, n. 5, p. 1582, doi. 10.3390/cancers15051582
By:
- Boyd, David C.;
- Zboril, Emily K.;
- Olex, Amy L.;
- Leftwich, Tess J.;
- Hairr, Nicole S.;
- Byers, Holly A.;
- Valentine, Aaron D.;
- Altman, Julia E.;
- Alzubi, Mohammad A.;
- Grible, Jacqueline M.;
- Turner, Scott A.;
- Ferreira-Gonzalez, Andrea;
- Dozmorov, Mikhail G.;
- Harrell, J. Chuck
Publication type:
Article
Separation of breast cancer and organ microenvironment transcriptomes in metastases.
Published in:
2019
By:
- Alzubi, Mohammad A.;
- Turner, Tia H.;
- Olex, Amy L.;
- Sohal, Sahib S.;
- Tobin, Nicholas P.;
- Recio, Susana G.;
- Bergh, Jonas;
- Hatschek, Thomas;
- Parker, Joel S.;
- Sartorius, Carol A.;
- Perou, Charles M.;
- Dozmorov, Mikhail G.;
- Harrell, J. Chuck
Publication type:
journal article
TopEx: topic exploration of COVID-19 corpora - Results from the BioCreative VII Challenge Track 4.
Published in:
Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac063
By:
- Olex, Amy L;
- French, Evan;
- Burdette, Peter;
- Sagiraju, Srilakshmi;
- Neumann, Thomas;
- Gal, Tamas S;
- McInnes, Bridget T
Publication type:
Article
Impact of Nutritional Status on COVID‐19‐Induced Olfactory Dysfunction.
Published in:
Laryngoscope, 2024, v. 134, n. 10, p. 4338, doi. 10.1002/lary.31660
By:
- Mastoloni, Elizabeth M.;
- French, Evan;
- Coelho, Daniel H.;
- Wilcox, Adam B.;
- Lee, Adam M.;
- Graves, Alexis;
- Anzalone, Alfred Jerrod;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E.;
- Southerland, Andrew;
- Girvin, Andrew T.;
- Walden, Anita;
- Sharathkumar, Anjali A.;
- Amor, Benjamin;
- Bates, Benjamin;
- Hendricks, Brian;
- Patel, Brijesh
Publication type:
Article
Angiopoietin pathway gene expression associated with poor breast cancer survival.
Published in:
2017
By:
- Ramanathan, Rajesh;
- Olex, Amy;
- Dozmorov, Mikhail;
- Bear, Harry;
- Fernandez, Leopoldo;
- Takabe, Kazuaki
Publication type:
Report
Kinetic Analysis of the Auxin Transcriptome Reveals Cell Wall Remodeling Proteins That Modulate Lateral Root Development in Arabidopsis.
Published in:
Plant Cell, 2013, v. 25, n. 9, p. 3329, doi. 10.1105/tpc.113.114868
By:
- Lewis, Daniel R.;
- Olex, Amy L.;
- Lundy, Stacey R.;
- Turkett, William H.;
- Fetrow, Jacquelyn S.;
- Muday, Gloria K.
Publication type:
Article
Single‐cell transcriptional atlas of human breast cancers and model systems.
Published in:
Clinical & Translational Medicine, 2024, v. 14, n. 10, p. 1, doi. 10.1002/ctm2.70044
By:
- Altman, Julia E.;
- Olex, Amy L.;
- Zboril, Emily K.;
- Walker, Carson J.;
- Boyd, David C.;
- Myrick, Rachel K.;
- Hairr, Nicole S.;
- Koblinski, Jennifer E.;
- Puchalapalli, Madhavi;
- Hu, Bin;
- Dozmorov, Mikhail G.;
- Chen, X. Steven;
- Chen, Yunshun;
- Perou, Charles M.;
- Lehmann, Brian D.;
- Visvader, Jane E.;
- Harrell, J. Chuck
Publication type:
Article
Anti‐Tumor Effect of Embryonic Stem Cell Derived Exosomes in Triple Negative Breast Cancer: Potential Role of TCF7‐E‐Cadherin and VEGF.
Published in:
FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.R5444
By:
- Samidurai, Arun;
- Das, Anindita;
- Kraskauskas, Donatas;
- Zhang, Bei;
- Olex, Amy;
- Liu, Jinze;
- Hu, Bin;
- Koblinski, Jennifer;
- Singla, Dinender K.;
- Kukreja, Rakesh C.
Publication type:
Article
The Relative Risk of COVID-19 in Solid Organ Transplant Recipients Over Waves of the Pandemic.
Published in:
Transplant International, 2024, p. 1, doi. 10.3389/ti.2024.13351
By:
- Vinson, Amanda J.;
- Anzalone, Alfred J.;
- Schissel, Makayla;
- Dai, Ran;
- Agarwal, Gaurav;
- Lee, Stephen B.;
- Olex, Amy;
- Mannon, Roslyn B.
Publication type:
Article
Serine residues 726 and 780 have nonredundant roles regulating STAT5a activity in luminal breast cancer.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-92830-8
By:
- Woock, Alicia E.;
- Grible, Jacqueline M.;
- Olex, Amy L.;
- Harrell, J. Chuck;
- Zot, Patricija;
- Idowu, Michael;
- Clevenger, Charles V.
Publication type:
Article
Potential drug–drug interactions among U.S. adults treated with nirmatrelvir/ritonavir: A cross‐sectional study of the National Covid Cohort Collaborative (N3C).
Published in:
Pharmacotherapy, 2023, v. 43, n. 12, p. 1251, doi. 10.1002/phar.2860
By:
- Xiao, Xuya;
- Mehta, Hemalkumar B.;
- Curran, Jill;
- Garibaldi, Brian T.;
- Alexander, G. Caleb;
- Wilcox, Adam B.;
- Lee, Adam M.;
- Graves, Alexis;
- Anzalone, Alfred;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E.;
- Southerland, Andrew;
- Girvin, Andrew T.;
- Walden, Anita;
- Sharathkumar, Anjali A.;
- Amor, Benjamin;
- Bates, Benjamin
Publication type:
Article
Integrated Analysis of lncRNA–miRNA–mRNA Regulatory Network in Rapamycin-Induced Cardioprotection against Ischemia/Reperfusion Injury in Diabetic Rabbits.
Published in:
Cells (2073-4409), 2023, v. 12, n. 24, p. 2820, doi. 10.3390/cells12242820
By:
- Samidurai, Arun;
- Olex, Amy L.;
- Ockaili, Ramzi;
- Kraskauskas, Donatas;
- Roh, Sean K.;
- Kukreja, Rakesh C.;
- Das, Anindita
Publication type:
Article
COVID-19 BIVALENT BOOSTER EFFECTIVENESS IN PEOPLE WITH AND WITHOUT IMMUNE DYSFUNCTION.
Published in:
Topics in Antiviral Medicine, 2023, v. 31, n. 2, p. 88
By:
- Jing Sun;
- Yifan Zhang;
- Anzalone, Alfred J.;
- Olex, Amy L.;
- Hurwitz, Eric;
- Mathew, Jomol;
- Safdar, Nasia;
- Islam, Jessica Y.;
- Mannon, Roslyn;
- Vinson, Amanda J.;
- Chute, Christopher;
- Haendel, Melissa A.;
- Patel, Rena;
- Kirk, Greg
Publication type:
Article
Racial disparities in COVID-19 test positivity among people living with HIV in the United States.
Published in:
International Journal of STD & AIDS, 2022, v. 33, n. 5, p. 462, doi. 10.1177/09564624221074468
By:
- Islam, Jessica Y;
- Madhira, Vithal;
- Sun, Jing;
- Olex, Amy;
- Franceschini, Nora;
- Kirk, Gregory;
- Patel, Rena
Publication type:
Article
Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
Published in:
Plant Physiology, 2018, v. 176, n. 3, p. 2095, doi. 10.1104/pp.17.00907
By:
- Harkey, Alexandria F.;
- Watkins, Justin M.;
- Olex, Amy L.;
- DiNapoli, Kathleen T.;
- Lewis, Daniel R.;
- Fetrow, Jacquelyn S.;
- Binder, Brad M.;
- Muday, Gloria K.
Publication type:
Article
Yin Yang 1 controls cerebellar astrocyte maturation.
Published in:
Glia, 2023, v. 71, n. 10, p. 2437, doi. 10.1002/glia.24434
By:
- Mockenhaupt, Karli;
- Tyc, Katarzyna M.;
- McQuiston, Adam;
- Gonsiewski, Alexandra K.;
- Zarei‐Kheirabadi, Masoumeh;
- Hariprashad, Avani;
- Biswas, Debolina D.;
- Gupta, Angela S.;
- Olex, Amy L.;
- Singh, Sandeep K.;
- Waters, Michael R.;
- Dupree, Jeff L.;
- Dozmorov, Mikhail G.;
- Kordula, Tomasz
Publication type:
Article
Outcomes of patients with active cancers and pre-existing cardiovascular diseases infected with SARS-CoV-2.
Published in:
Cardio-Oncology, 2023, v. 9, n. 1, p. 1, doi. 10.1186/s40959-023-00187-w
By:
- Patel, Brijesh;
- Chapman, Scott A.;
- Neumann, Jake T.;
- Visaria, Aayush;
- Ogungbe, Oluwabunmi;
- Wen, Sijin;
- Khodaverdi, Maryam;
- Makwana, Priyal;
- Singh, Jasvinder A.;
- Sokos, George;
- Wilcox, Adam B.;
- Lee, Adam M.;
- Graves, Alexis;
- Anzalone, Alfred Jerrod;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E.;
- Southerland, Andrew
Publication type:
Article
Risk factors for severe outcomes of coronavirus disease 2019 through the waves of the pandemic: Comparing patients with and without solid organ transplantation.
Published in:
Transplant Infectious Disease, 2024, v. 26, n. 5, p. 1, doi. 10.1111/tid.14333
By:
- Lee, Stephen B.;
- Dai, Ran;
- French, Evan;
- Anzalone, Jerrod A.;
- Olex, Amy L.;
- Ge, Jin;
- Schissel, Makayla;
- Agarwal, Gaurav;
- Vinson, Amanda;
- Madhira, Vithal;
- Mannon, Roslyn B.
Publication type:
Article
SC2ATmd: a tool for integration of the figure of merit with cluster analysis for gene expression data.
Published in:
Bioinformatics, 2011, v. 27, n. 9, p. 1330, doi. 10.1093/bioinformatics/btr115
By:
- Olex, Amy L.;
- Fetrow, Jacquelyn S.
Publication type:
Article
Moving towards the detection of frailty with biomarkers: A population health study.
Published in:
Aging Cell, 2024, v. 23, n. 2, p. 1, doi. 10.1111/acel.14030
By:
- Sargent, Lana;
- Nalls, Mike;
- Singleton, Andrew;
- Palta, Priya;
- Kucharska‐Newton, Anna;
- Pankow, Jim;
- Young, Hunter;
- Tang, Weihong;
- Lutsey, Pamela;
- Olex, Amy;
- Wendte, Jered M.;
- Li, Danni;
- Alonso, Alvaro;
- Griswold, Michael;
- Windham, B. Gwen;
- Baninelli, Stefania;
- Ferrucci, Luigi
Publication type:
Article
The crosstalking immune cells network creates a collective function beyond the function of each cellular constituent during the progression of hepatocellular carcinoma.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-39020-w
By:
- Koelsch, Nicholas;
- Mirshahi, Faridoddin;
- Aqbi, Hussein F.;
- Saneshaw, Mulugeta;
- Idowu, Michael O.;
- Olex, Amy L.;
- Sanyal, Arun J.;
- Manjili, Masoud H.
Publication type:
Article
The crosstalking immune cells network creates a collective function beyond the function of each cellular constituent during the progression of hepatocellular carcinoma.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-39020-w
By:
- Koelsch, Nicholas;
- Mirshahi, Faridoddin;
- Aqbi, Hussein F.;
- Saneshaw, Mulugeta;
- Idowu, Michael O.;
- Olex, Amy L.;
- Sanyal, Arun J.;
- Manjili, Masoud H.
Publication type:
Article
Characterizing the impact of SARS-CoV-2 reinfection on surgical outcomes.
Published in:
2024
By:
- Li, Xin Ran;
- Shaik, Tahseen;
- Canales, Bethany;
- Yang, Xin;
- Szabo, Aniko;
- Lauer, Kathryn;
- Gould, Jon;
- Kothari, Anai N;
- Verhagen, Nathaniel B;
- National COVID Cohort Collaborative (N3C) Consortium;
- Wilcox, Adam B;
- Lee, Adam M;
- Graves, Alexis;
- Anzalone, Alfred;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E;
- Southerland, Andrew
Publication type:
Letter

Found: 37