Works by Okuda, Shujiro


Results: 101
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    The Fifth ACGG-DB Meeting Report: Towards an International Glycan Structure Repository.

    Published in:
    Glycobiology, 2013, v. 23, n. 12, p. 1422, doi. 10.1093/glycob/cwt084
    By:
    • Aoki-Kinoshita, Kiyoko F;
    • Sawaki, Hiromichi;
    • An, Hyun Joo;
    • Campbell, Matthew;
    • Cao, Qichen;
    • Cummings, Richard;
    • Hsu, Daniel K;
    • Kato, Masaki;
    • Kawasaki, Toshisuke;
    • Khoo, Kay-Hooi;
    • Kim, Jaehan;
    • Kolarich, Daniel;
    • Li, Xianyu;
    • Liu, Mingqi;
    • Matsubara, Masaaki;
    • Okuda, Shujiro;
    • Packer, Nicolle H;
    • Ranzinger, René;
    • Shen, Huali;
    • Shikanai, Toshihide
    Publication type:
    Article
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    Cyclin D1 Binding Protein 1 Responds to DNA Damage through the ATM–CHK2 Pathway.

    Published in:
    Journal of Clinical Medicine, 2022, v. 11, n. 3, p. 851, doi. 10.3390/jcm11030851
    By:
    • Niwa, Yusuke;
    • Kamimura, Kenya;
    • Ogawa, Kohei;
    • Oda, Chiyumi;
    • Tanaka, Yuto;
    • Horigome, Ryoko;
    • Ohtsuka, Masato;
    • Miura, Hiromi;
    • Fujisawa, Koichi;
    • Yamamoto, Naoki;
    • Takami, Taro;
    • Okuda, Shujiro;
    • Ko, Masayoshi;
    • Owaki, Takashi;
    • Kimura, Atsushi;
    • Shibata, Osamu;
    • Morita, Shinichi;
    • Sakai, Norihiro;
    • Abe, Hiroyuki;
    • Yokoo, Takeshi
    Publication type:
    Article
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    Introducing glycomics data into the Semantic Web.

    Published in:
    Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-39
    By:
    • Kiyoko F. Aoki-Kinoshita;
    • Bolleman, Jerven;
    • Campbell, Matthew P.;
    • Shin Kawano;
    • Jin-Dong Kim;
    • Lütteke, Thomas;
    • Masaaki Matsubara;
    • Shujiro Okuda;
    • Ranzinger, Rene;
    • Hiromichi Sawaki;
    • Toshihide Shikanai;
    • Daisuke Shinmachi;
    • Yoshinori Suzuki;
    • Toukach, Philip;
    • Issaku Yamada;
    • Packer, Nicolle H.;
    • Hisashi Narimatsu
    Publication type:
    Article
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    Clinical utility of tumor-infiltrating lymphocyte evaluation by two different methods in breast cancer patients treated with neoadjuvant chemotherapy.

    Published in:
    Breast Cancer (13406868), 2025, v. 32, n. 2, p. 404, doi. 10.1007/s12282-025-01665-y
    By:
    • Nagahashi, Masayuki;
    • Ishikawa, Eri;
    • Nagai, Takahiro;
    • Kanaoka, Haruka;
    • Oshiro, Aoi;
    • Togashi, Yusa;
    • Hattori, Akira;
    • Tsuchida, Junko;
    • Higuchi, Tomoko;
    • Nishimukai, Arisa;
    • Murase, Keiko;
    • Takatsuka, Yuichi;
    • Kihara, Takako;
    • Ling, Yiwei;
    • Okuda, Shujiro;
    • Hirota, Seiichi;
    • Miyoshi, Yasuo
    Publication type:
    Article
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    Frequent Germline and Somatic Single Nucleotide Variants in the Promoter Region of the Ribosomal RNA Gene in Japanese Lung Adenocarcinoma Patients.

    Published in:
    Cells (2073-4409), 2020, v. 9, n. 11, p. 2409, doi. 10.3390/cells9112409
    By:
    • Ohashi, Riuko;
    • Umezu, Hajime;
    • Sato, Ayako;
    • Abé, Tatsuya;
    • Kondo, Shuhei;
    • Daigo, Kenji;
    • Sato, Seijiro;
    • Hara, Norikazu;
    • Miyashita, Akinori;
    • Ikeuchi, Takeshi;
    • Motoyama, Teiichi;
    • Kishi, Masashi;
    • Nagaoka, Tadahiro;
    • Horiuchi, Keiko;
    • Shiga, Atsushi;
    • Okuda, Shujiro;
    • Sekiya, Tomoki;
    • Ohtsubo, Aya;
    • Ichikawa, Kosuke;
    • Kagamu, Hiroshi
    Publication type:
    Article
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    iPath2.0: interactive pathway explorer.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W412, doi. 10.1093/nar/gkr313
    By:
    • Yamada, Takuji;
    • Letunic, Ivica;
    • Okuda, Shujiro;
    • Kanehisa, Minoru;
    • Bork, Peer
    Publication type:
    Article
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    KEGG for linking genomes to life and the environment.

    Published in:
    Nucleic Acids Research, 2008, v. 36, p. D480
    By:
    • Kanehisa, Minoru;
    • Araki, Michihiro;
    • Goto, Susumu;
    • Hattori, Masahiro;
    • Hirakawa, Mika;
    • Itoh, Masumi;
    • Katayama, Toshiaki;
    • Kawashima, Shuichi;
    • Okuda, Shujiro;
    • Tokimatsu, Toshiaki;
    • Yamanishi, Yoshihiro
    Publication type:
    Article
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    Rare PDCD11 variations are not associated with risk of schizophrenia in Japan.

    Published in:
    Psychiatry & Clinical Neurosciences, 2017, v. 71, n. 11, p. 780, doi. 10.1111/pcn.12549
    By:
    • Hoya, Satoshi;
    • Watanabe, Yuichiro;
    • Hishimoto, Akitoyo;
    • Nunokawa, Ayako;
    • Kaneko, Naoshi;
    • Muratake, Tatsuyuki;
    • Shinmyo, Naofumi;
    • Otsuka, Ikuo;
    • Okuda, Shujiro;
    • Inoue, Emiko;
    • Igeta, Hirofumi;
    • Shibuya, Masako;
    • Egawa, Jun;
    • Orime, Naoki;
    • Sora, Ichiro;
    • Someya, Toshiyuki
    Publication type:
    Article
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    Genetic engineering employing MPB70 and its promoter enables efficient secretion and expression of foreign antigen in bacillus Calmette Guérin (BCG) Tokyo.

    Published in:
    Microbiology & Immunology, 2024, v. 68, n. 4, p. 130, doi. 10.1111/1348-0421.13116
    By:
    • Takeishi, Atsuki;
    • Shaban, Amina K.;
    • Kakihana, Taichi;
    • Takihara, Hayato;
    • Okuda, Shujiro;
    • Osada, Hidekazu;
    • Suameitria Dewi, Desak Nyoman Surya;
    • Ozeki, Yuriko;
    • Yoshida, Yutaka;
    • Nishiyama, Akihito;
    • Tateishi, Yoshitaka;
    • Aizu, Yuki;
    • Chuma, Yasushi;
    • Onishi, Kazuyo;
    • Hayashi, Daisuke;
    • Yamamoto, Saburo;
    • Mukai, Tetsu;
    • Ato, Manabu;
    • Thai, Duong Huu;
    • Nhi, Huynh Thi Thao
    Publication type:
    Article
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    Loss of Atg2b and Gskip Impairs the Maintenance of the Hematopoietic Stem Cell Pool Size.

    Published in:
    Molecular & Cellular Biology, 2022, v. 42, n. 1, p. 1, doi. 10.1128/MCB.00024-21
    By:
    • Sakai, Shun-suke;
    • Hasegawa, Atsushi;
    • Ishimura, Ryosuke;
    • Tamura, Naoki;
    • Kageyama, Shun;
    • Komatsu-Hirota, Satoko;
    • Abe, Manabu;
    • Ling, Yiwei;
    • Okuda, Shujiro;
    • Funayama, Manabu;
    • Kikkawa, Mika;
    • Miura, Yoshiki;
    • Sakimura, Kenji;
    • Narita, Ichiei;
    • Waguri, Satoshi;
    • Shimizu, Ritsuko;
    • Komatsu, Masaaki
    Publication type:
    Article
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    Loss of Atg2b and Gskip Impairs the Maintenance of the Hematopoietic Stem Cell Pool Size.

    Published in:
    Molecular & Cellular Biology, 2022, v. 42, n. 1, p. 1, doi. 10.1128/mcb.00024-21
    By:
    • Shun-suke Sakai;
    • Atsushi Hasegawa;
    • Ryosuke Ishimura;
    • Naoki Tamura;
    • Shun Kageyama;
    • Satoko Komatsu-Hirota;
    • Manabu Abe;
    • Yiwei Ling;
    • Shujiro Okuda;
    • Manabu Funayama;
    • Mika Kikkawa;
    • Yoshiki Miura;
    • Kenji Sakimura;
    • Ichiei Narita;
    • Satoshi Waguri;
    • Ritsuko Shimizu;
    • Masaaki Komatsu
    Publication type:
    Article
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    Brown adipose tissue dysfunction promotes heart failure via a trimethylamine N-oxide-dependent mechanism.

    Published in:
    Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-19245-x
    By:
    • Yoshida, Yohko;
    • Shimizu, Ippei;
    • Shimada, Atsuhiro;
    • Nakahara, Keita;
    • Yanagisawa, Sachiko;
    • Kubo, Minoru;
    • Fukuda, Shinji;
    • Ishii, Chiharu;
    • Yamamoto, Hiromitsu;
    • Ishikawa, Takamasa;
    • Kano, Kuniyuki;
    • Aoki, Junken;
    • Katsuumi, Goro;
    • Suda, Masayoshi;
    • Ozaki, Kazuyuki;
    • Yoshida, Yutaka;
    • Okuda, Shujiro;
    • Ohta, Shigeo;
    • Okamoto, Shiki;
    • Minokoshi, Yasuhiko
    Publication type:
    Article
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    Plasma Sphingosine-1-Phosphate Levels Are Associated with Progression of Estrogen Receptor-Positive Breast Cancer.

    Published in:
    International Journal of Molecular Sciences, 2021, v. 22, n. 24, p. 13367, doi. 10.3390/ijms222413367
    By:
    • Ikarashi, Mayuko;
    • Tsuchida, Junko;
    • Nagahashi, Masayuki;
    • Takeuchi, Shiho;
    • Moro, Kazuki;
    • Toshikawa, Chie;
    • Abe, Shun;
    • Ichikawa, Hiroshi;
    • Shimada, Yoshifumi;
    • Sakata, Jun;
    • Koyama, Yu;
    • Sato, Nobuaki;
    • Hait, Nitai C.;
    • Ling, Yiwei;
    • Okuda, Shujiro;
    • Takabe, Kazuaki;
    • Wakai, Toshifumi
    Publication type:
    Article
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    Rare UNC13B variations and risk of schizophrenia: Whole-exome sequencing in a multiplex family and follow-up resequencing and a case-control study.

    Published in:
    American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2016, v. 171B, n. 6, p. 797, doi. 10.1002/ajmg.b.32444
    By:
    • Egawa, Jun;
    • Hoya, Satoshi;
    • Watanabe, Yuichiro;
    • Nunokawa, Ayako;
    • Shibuya, Masako;
    • Ikeda, Masashi;
    • Inoue, Emiko;
    • Okuda, Shujiro;
    • Kondo, Kenji;
    • Saito, Takeo;
    • Kaneko, Naoshi;
    • Muratake, Tatsuyuki;
    • Igeta, Hirofumi;
    • Iwata, Nakao;
    • Someya, Toshiyuki
    Publication type:
    Article
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    PCPE-1, a brown adipose tissue-derived cytokine, promotes obesity-induced liver fibrosis.

    Published in:
    EMBO Journal, 2024, v. 43, n. 21, p. 4846, doi. 10.1038/s44318-024-00196-0
    By:
    • Hsiao, Yung Ting;
    • Yoshida, Yohko;
    • Okuda, Shujiro;
    • Abe, Manabu;
    • Mizuno, Seiya;
    • Takahashi, Satoru;
    • Nakagami, Hironori;
    • Morishita, Ryuichi;
    • Kamimura, Kenya;
    • Terai, Shuji;
    • Aung, Tin May;
    • Li, Ji;
    • Furihata, Takaaki;
    • Tang, Jing Yuan;
    • Walsh, Kenneth;
    • Ishigami, Akihito;
    • Minamino, Tohru;
    • Shimizu, Ippei
    Publication type:
    Article
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    GlycoRDF: an ontology to standardize glycomics data in RDF.

    Published in:
    Bioinformatics, 2015, v. 31, n. 6, p. 919, doi. 10.1093/bioinformatics/btu732
    By:
    • Ranzinger, Rene;
    • Aoki-Kinoshita, Kiyoko F.;
    • Campbell, Matthew P.;
    • Shin Kawano;
    • Lütteke, Thomas;
    • Shujiro Okuda;
    • Daisuke Shinmachi;
    • Toshihide Shikanai;
    • Hiromichi Sawaki;
    • Toukach, Philip;
    • Masaaki Matsubara;
    • Issaku Yamada;
    • Hisashi Narimatsu
    Publication type:
    Article
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