Works by Ohtsubo, Yoshiyuki

Results: 38

Analysis of extracellular alginate lyase and its gene from a marine bacterial strain, Pseudoalteromonas atlantica AR06.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 86, n. 2, p. 567, doi. 10.1007/s00253-009-2278-z

By:

Matsushima, Ryoji;
Danno, Hiroko;
Uchida, Motoharu;
Ishihara, Kenji;
Suzuki, Toshiyuki;
Kaneniwa, Masaki;
Ohtsubo, Yoshiyuki;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

Insertion sequence-based cassette PCR: cultivation-independent isolation of γ-hexachlorocyclohexane-degrading genes from soil DNA.

Published in:

Applied Microbiology & Biotechnology, 2008, v. 79, n. 4, p. 627, doi. 10.1007/s00253-008-1463-9

By:

Fuchu, Genki;
Ohtsubo, Yoshiyuki;
Ito, Michihiro;
Miyazaki, Ryo;
Ono, Akira;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

Aerobic degradation of lindane (γ-hexachlorocyclohexane) in bacteria and its biochemical and molecular basis.

Published in:

Applied Microbiology & Biotechnology, 2007, v. 76, n. 4, p. 741, doi. 10.1007/s00253-007-1066-x

By:

Nagata, Yuji;
Endo, Ryo;
Ito, Michihiro;
Ohtsubo, Yoshiyuki;
Tsuda, Masataka

Publication type:

Article

Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches.

Published in:

Applied Microbiology & Biotechnology, 2007, v. 74, n. 2, p. 501, doi. 10.1007/s00253-006-0671-4

By:

Ono, Akira;
Miyazaki, Ryo;
Sota, Masahiro;
Ohtsubo, Yoshiyuki;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

Strategies for bioremediation of polychlorinated biphenyls.

Published in:

Applied Microbiology & Biotechnology, 2004, v. 65, n. 3, p. 250, doi. 10.1007/s00253-004-1654-y

By:

Ohtsubo, Yoshiyuki;
Kudo, Toshiaki;
Tsuda, Masataka;
Nagata, Yuji

Publication type:

Article

Properties and efficient scrap-and-build repairing of mechanically sheared 3' DNA ends.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0660-7

By:

Ohtsubo, Yoshiyuki;
Sakai, Keiichiro;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

Growth Inhibition by Metabolites of γ-Hexachlorocyclohexane in Sphingobium japonicum UT26.

Published in:

Bioscience, Biotechnology & Biochemistry, 2006, v. 70, n. 4, p. 1029, doi. 10.1271/bbb.70.1029

By:

Endo, Ryo;
Ohtsubo, Yoshiyuki;
Tsuda, Masataka;
Nagata, Yuji

Publication type:

Article

The Dual Functions of Biphenyl-degrading Ability of Pseudonomas sp. KKS102: Energy Acquisition and Substrate Detoxification.

Published in:

Bioscience, Biotechnology & Biochemistry, 2003, v. 67, n. 9, p. 1970, doi. 10.1271/bbb.67.1970

By:

Delawary, Mina;
Ohtsubo, Yoshiyuki;
Ohta, Akinori

Publication type:

Article

Clamping-mediated incorporation of single-stranded DNA with concomitant DNA synthesis by Taq polymerase involves nick-translation.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-52095-3

By:

Ohtsubo, Yoshiyuki;
Kawahara, Syoutaro;
Nagata, Yuji

Publication type:

Article

Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology.

Published in:

Environmental Microbiology, 2010, v. 12, n. 9, p. 2539, doi. 10.1111/j.1462-2920.2010.02227.x

By:

Nishiyama, Eri;
Ohtsubo, Yoshiyuki;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

Identification of a response regulator gene for catabolite control from a PCB-degrading β-proteobacteria, Acidovorax sp. KKS102.

Published in:

Molecular Microbiology, 2006, v. 60, n. 6, p. 1563, doi. 10.1111/j.1365-2958.2006.05197.x

By:

Ohtsubo, Yoshiyuki;
Goto, Hiroyuki;
Nagata, Yuji;
Kudo, Toshiaki;
Tsuda, Masataka

Publication type:

Article

Breakdown of bulk-projected isotropy in surface electronic states of topological Kondo insulator SmB6(001).

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33347-0

By:

Ohtsubo, Yoshiyuki;
Nakaya, Toru;
Nakamura, Takuto;
Le Fèvre, Patrick;
Bertran, François;
Iga, Fumitoshi;
Kimura, Shin-Ichi

Publication type:

Article

Three distinct metabolic phases of polychlorinated biphenyls/biphenyl degrader Acidovorax sp. KKS102 in nutrient broth.

Published in:

Bioscience, Biotechnology & Biochemistry, 2024, v. 88, n. 3, p. 305, doi. 10.1093/bbb/zbad178

By:

Sakai, Keiichiro;
Kishida, Kouhei;
Matsumoto, Satoshi;
Nagata, Yuji;
Tsuda, Masataka;
Ohtsubo, Yoshiyuki

Publication type:

Article

Degradation of DDT by γ-hexachlorocyclohexane dehydrochlorinase LinA.

Published in:

Bioscience, Biotechnology & Biochemistry, 2024, v. 88, n. 1, p. 123, doi. 10.1093/bbb/zbad141

By:

Habibullah, Kafayat Olaide Yusuf;
Ren Ito;
Leonardo Stari;
Kouhei Kishida;
Yoshiyuki Ohtsubo;
Eiji Masai;
Masao Fukuda;
Keisuke Miyauchi;
Yuji Nagata

Publication type:

Article

Genome evolution related to γ-hexachlorocyclohexane metabolic function in the soil microbial population.

Published in:

Bioscience, Biotechnology & Biochemistry, 2022, v. 86, n. 6, p. 800, doi. 10.1093/bbb/zbac042

By:

Hiromi Kato;
Lijun Su;
Ayami Tanaka;
Honami Katsu;
Yoshiyuki Ohtsubo;
Shigeto Otsuka;
Keishi Senoo;
Yuji Nagata

Publication type:

Article

Algorisms used for in silico finishing of bacterial genomes based on short-read assemblage implemented in GenoFinisher, AceFileViewer, and ShortReadManager.

Published in:

Bioscience, Biotechnology & Biochemistry, 2022, v. 86, n. 6, p. 693, doi. 10.1093/bbb/zbac032

By:

Yoshiyuki Ohtsubo;
Yuu Hirose;
Yuji Nagata

Publication type:

Article

Establishment of plasmid vector and allelic exchange mutagenesis systems in a mycobacterial strain that is able to degrade polycyclic aromatic hydrocarbon.

Published in:

Bioscience, Biotechnology & Biochemistry, 2018, v. 82, n. 7, p. 1169, doi. 10.1080/09168451.2018.1445522

By:

Kishida, Kouhei;
Ogawa, Natsumi;
Ichihashi, Eikichi;
Kato, Hiromi;
Nagata, Yuji;
Ohtsubo, Yoshiyuki;
Tsuda, Masataka

Publication type:

Article

The lin Genes for γ-Hexachlorocyclohexane Degradation in Sphingornonas sp. MM-1 Proved to Be Dispersed across Multiple Plasmids.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 3, p. 466, doi. 10.1271/bbb.100652

By:

Tabata, Michiro;
Endo, Ryo;
Michihiro Ito;
Ohtsubo, Yoshiyuki;
Kumar, Ashwani;
Tsuda, Masataka;
Nagata, Yuji

Publication type:

Article

Efficient N-tailing of blunt DNA ends by Moloney murine leukemia virus reverse transcriptase.

Published in:

Scientific Reports, 2017, p. 41769, doi. 10.1038/srep41769

By:

Ohtsubo, Yoshiyuki;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

Transcriptome Analysis of Zygotic Induction During Conjugative Transfer of Plasmid RP4.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.01125

By:

Miyakoshi, Masatoshi;
Ohtsubo, Yoshiyuki;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade.

Published in:

DNA Research, 2021, v. 28, n. 6, p. 1, doi. 10.1093/dnares/dsab024

By:

Hirose, Yuu;
Ohtsubo, Yoshiyuki;
Misawa, Naomi;
Yonekawa, Chinatsu;
Nagao, Nobuyoshi;
Shimura, Yohei;
Fujisawa, Takatomo;
Kanesaki, Yu;
Katoh, Hiroshi;
Katayama, Mitsunori;
Yamaguchi, Haruyo;
Yoshikawa, Hirofumi;
Ikeuchi, Masahiko;
Eki, Toshihiko;
Nakamura, Yasukazu;
Kawachi, Masanobu

Publication type:

Article

Optimization of single strand DNA incorporation reaction by Moloney murine leukaemia virus reverse transcriptase.

Published in:

DNA Research, 2018, v. 25, n. 5, p. 477, doi. 10.1093/dnares/dsy018

By:

Ohtsubo, Yoshiyuki;
Sasaki, Haruna;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide.

Published in:

DNA Research, 2016, v. 23, n. 6, p. 581, doi. 10.1093/dnares/dsw041

By:

Michiro Tabata;
Satoshi Ohhata;
Yuki Nikawadori;
Kouhei Kishida;
Takuya Sato;
Toru Kawasumi;
Hiromi Kato;
Yoshiyuki Ohtsubo;
Masataka Tsuda;
Yuji Nagata

Publication type:

Article

Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance.

Published in:

DNA Research, 2015, v. 22, n. 6, p. 413, doi. 10.1093/dnares/dsv023

By:

Hiromi Kato;
Hiroshi Mori;
Fumito Maruyama;
Atsushi Toyoda;
Kenshiro Oshima;
Ryo Endo;
Genki Fuchu;
Masatoshi Miyakoshi;
Ayumi Dozono;
Yoshiyuki Ohtsubo;
Yuji Nagata;
Masahira Hattori;
Asao Fujiyama;
Ken Kurokawa;
Tsuda, Masataka

Publication type:

Article

Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes.

Published in:

DNA Research, 2014, v. 21, n. 2, p. 217, doi. 10.1093/dnares/dst052

By:

Mori, Hiroshi;
Maruyama, Fumito;
Kato, Hiromi;
Toyoda, Atsushi;
Dozono, Ayumi;
Ohtsubo, Yoshiyuki;
Nagata, Yuji;
Fujiyama, Asao;
Tsuda, Masataka;
Kurokawa, Ken

Publication type:

Article

Construction of Signature-tagged Mutant Library in Mesorhizobium loti as a Powerful Tool for Functional Genomics.

Published in:

DNA Research, 2008, v. 15, n. 5, p. 297, doi. 10.1093/dnares/dsn017

By:

Shimoda, Yoshikazu;
Mitsui, Hisayuki;
Kamimatsuse, Hiroko;
Minamisawa, Kiwamu;
Nishiyama, Eri;
Ohtsubo, Yoshiyuki;
Nagata, Yuji;
Tsuda, Masataka;
Shinpo, Sayaka;
Watanabe, Akiko;
Kohara, Mitsuyo;
Yamada, Manabu;
Nakamura, Yasukazu;
Tabata, Satoshi;
Sato, Shusei

Publication type:

Article

Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis.

Published in:

2009

By:

Suenaga, Hikaru;
Koyama, Yoshinori;
Miyakoshi, Masatoshi;
Miyazaki, Ryo;
Yano, Hirokazu;
Sota, Masahiro;
Ohtsubo, Yoshiyuki;
Tsuda, Masataka;
Miyazaki, Kentaro

Publication type:

Bibliography

Increase of secondary metabolites in sweet basil (Ocimum basilicum L.) leaves by exposure to N2O5 with plasma technology.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-63508-8

By:

Tateishi, Rie;
Ogawa-Kishida, Natsumi;
Fujii, Nobuharu;
Nagata, Yuji;
Ohtsubo, Yoshiyuki;
Sasaki, Shota;
Takashima, Keisuke;
Kaneko, Toshiro;
Higashitani, Atsushi

Publication type:

Article

Lessons from the genomes of lindane‐degrading sphingomonads.

Published in:

Environmental Microbiology Reports, 2019, v. 11, n. 5, p. 630, doi. 10.1111/1758-2229.12762

By:

Nagata, Yuji;
Kato, Hiromi;
Ohtsubo, Yoshiyuki;
Tsuda, Masataka

Publication type:

Article

Surface Kondo effect and non-trivial metallic state of the Kondo insulator YbB12.

Published in:

Nature Communications, 2016, v. 7, n. 8, p. 12690, doi. 10.1038/ncomms12690

By:

Hagiwara, Kenta;
Ohtsubo, Yoshiyuki;
Matsunami, Masaharu;
Ideta, Shin-ichiro;
Tanaka, Kiyohisa;
Miyazaki, Hidetoshi;
Rault, Julien E.;
Fèvre, Patrick Le;
Bertran, François;
Taleb-Ibrahimi, Amina;
Yukawa, Ryu;
Kobayashi, Masaki;
Horiba, Koji;
Kumigashira, Hiroshi;
Sumida, Kazuki;
Okuda, Taichi;
Iga, Fumitoshi;
Kimura, Shin-ichi

Publication type:

Article

Transgenic Arabidopsis thaliana plants expressing bacterial γ-hexachlorocyclohexane dehydrochlorinase LinA.

Published in:

BMC Biotechnology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12896-024-00867-0

By:

Deng, Wenhao;
Takada, Yoshinobu;
Nanasato, Yoshihiko;
Kishida, Kouhei;
Stari, Leonardo;
Ohtsubo, Yoshiyuki;
Tabei, Yutaka;
Watanabe, Masao;
Nagata, Yuji

Publication type:

Article

Properties and biotechnological applications of natural and engineered haloalkane dehalogenases.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 23, p. 9865, doi. 10.1007/s00253-015-6954-x

By:

Nagata, Yuji;
Ohtsubo, Yoshiyuki;
Tsuda, Masataka

Publication type:

Article

Isolation of oxygenase genes for indigo-forming activity from an artificially polluted soil metagenome by functional screening using Pseudomonas putida strains as hosts.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 10, p. 4453, doi. 10.1007/s00253-014-6322-2

By:

Nagayama, Hirofumi;
Sugawara, Tomonori;
Endo, Ryo;
Ono, Akira;
Kato, Hiromi;
Ohtsubo, Yoshiyuki;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

Non-trivial surface states of samarium hexaboride at the (111) surface.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-10353-3

By:

Yoshiyuki Ohtsubo;
Yuki Yamashita;
Kenta Hagiwara;
Shin-ichiro Ideta;
Kiyohisa Tanaka;
Ryu Yukawa;
Koji Horiba;
Hiroshi Kumigashira;
Koji Miyamoto;
Taichi Okuda;
Wataru Hirano;
Fumitoshi Iga;
Shin-ichi Kimura

Publication type:

Article

GenomeMatcher: A graphical user interface for DNA sequence comparison.

Published in:

2008

By:

Ohtsubo, Yoshiyuki;
Ikeda-Ohtsubo, Wakako;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Product Review

Two-dimensional heavy fermion in a monoatomic-layer Kondo lattice YbCu2.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43662-9

By:

Nakamura, Takuto;
Sugihara, Hiroki;
Chen, Yitong;
Yukawa, Ryu;
Ohtsubo, Yoshiyuki;
Tanaka, Kiyohisa;
Kitamura, Miho;
Kumigashira, Hiroshi;
Kimura, Shin-ichi

Publication type:

Article

Electronic Structure Evolution in the Temperature Range of Metal–Insulator Transitions on Sn/Ge(111).

Published in:

Physica Status Solidi - Rapid Research Letters, 2024, v. 18, n. 8, p. 1, doi. 10.1002/pssr.202470020

By:

Nair, Maya N.;
Palacio, Irene;
Ohtsubo, Yoshiyuki;
Taleb‐Ibrahimi, Amina;
Michel, Enrique G.;
Mascaraque, Arantzazu;
Tejeda, Antonio

Publication type:

Article

Electronic Structure Evolution in the Temperature Range of Metal–Insulator Transitions on Sn/Ge(111).

Published in:

Physica Status Solidi - Rapid Research Letters, 2024, v. 18, n. 8, p. 1, doi. 10.1002/pssr.202400041

By:

Nair, Maya N.;
Palacio, Irene;
Ohtsubo, Yoshiyuki;
Taleb‐Ibrahimi, Amina;
Michel, Enrique G.;
Mascaraque, Arantzazu;
Tejeda, Antonio

Publication type:

Article

Works by Ohtsubo, Yoshiyuki

Analysis of extracellular alginate lyase and its gene from a marine bacterial strain, Pseudoalteromonas atlantica AR06.

Insertion sequence-based cassette PCR: cultivation-independent isolation of γ-hexachlorocyclohexane-degrading genes from soil DNA.

Aerobic degradation of lindane (γ-hexachlorocyclohexane) in bacteria and its biochemical and molecular basis.

Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches.

Strategies for bioremediation of polychlorinated biphenyls.

Properties and efficient scrap-and-build repairing of mechanically sheared 3' DNA ends.

Growth Inhibition by Metabolites of γ-Hexachlorocyclohexane in Sphingobium japonicum UT26.

The Dual Functions of Biphenyl-degrading Ability of Pseudonomas sp. KKS102: Energy Acquisition and Substrate Detoxification.

Clamping-mediated incorporation of single-stranded DNA with concomitant DNA synthesis by Taq polymerase involves nick-translation.

Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology.

Identification of a response regulator gene for catabolite control from a PCB-degrading β-proteobacteria, Acidovorax sp. KKS102.

Breakdown of bulk-projected isotropy in surface electronic states of topological Kondo insulator SmB<sub>6</sub>(001).

Three distinct metabolic phases of polychlorinated biphenyls/biphenyl degrader Acidovorax sp. KKS102 in nutrient broth.

Degradation of DDT by γ-hexachlorocyclohexane dehydrochlorinase LinA.

Genome evolution related to γ-hexachlorocyclohexane metabolic function in the soil microbial population.

Algorisms used for in silico finishing of bacterial genomes based on short-read assemblage implemented in GenoFinisher, AceFileViewer, and ShortReadManager.

Establishment of plasmid vector and allelic exchange mutagenesis systems in a mycobacterial strain that is able to degrade polycyclic aromatic hydrocarbon.

The lin Genes for γ-Hexachlorocyclohexane Degradation in Sphingornonas sp. MM-1 Proved to Be Dispersed across Multiple Plasmids.

Efficient N-tailing of blunt DNA ends by Moloney murine leukemia virus reverse transcriptase.

Transcriptome Analysis of Zygotic Induction During Conjugative Transfer of Plasmid RP4.

Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade.

Optimization of single strand DNA incorporation reaction by Moloney murine leukaemia virus reverse transcriptase.

Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide.

Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance.

Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes.

Construction of Signature-tagged Mutant Library in Mesorhizobium loti as a Powerful Tool for Functional Genomics.

Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis.

Increase of secondary metabolites in sweet basil (Ocimum basilicum L.) leaves by exposure to N<sub>2</sub>O<sub>5</sub> with plasma technology.

Lessons from the genomes of lindane‐degrading sphingomonads.

Surface Kondo effect and non-trivial metallic state of the Kondo insulator YbB<sub>12</sub>.

Transgenic Arabidopsis thaliana plants expressing bacterial γ-hexachlorocyclohexane dehydrochlorinase LinA.

Properties and biotechnological applications of natural and engineered haloalkane dehalogenases.

Isolation of oxygenase genes for indigo-forming activity from an artificially polluted soil metagenome by functional screening using Pseudomonas putida strains as hosts.

Non-trivial surface states of samarium hexaboride at the (111) surface.

GenomeMatcher: A graphical user interface for DNA sequence comparison.

Two-dimensional heavy fermion in a monoatomic-layer Kondo lattice YbCu<sub>2</sub>.

Electronic Structure Evolution in the Temperature Range of Metal–Insulator Transitions on Sn/Ge(111).

Electronic Structure Evolution in the Temperature Range of Metal–Insulator Transitions on Sn/Ge(111).