Works by Nuzhdin, V.

Results: 167

Genomic Islands of Speciation in Anopheles gambiae.

Published in:

PLoS Biology, 2005, v. 3, n. 9, p. 1572, doi. 10.1371/journal.pbio.0030285

By:

Turner, Thomas L.;
Hahn, Matthew W.;
Nuzhdin, Sergey V.

Publication type:

Article

Genomic Islands of Speciation in Anopheles gambiae.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1, doi. 10.1371/journal.pbio.0030285

By:

Turner, Thomas L;
Hahn, Matthew W;
Nuzhdin, Sergey V

Publication type:

Article

Environment-dependent survival of Drosophila melanogaster: a quantitative genetic analysis.

Published in:

Aging Cell, 2004, v. 3, n. 3, p. 133, doi. 10.1111/j.1474-9728.2004.00098.x

By:

Mei-Hui Wang;
Lazebny, Oleg;
Harshman, Lawrence G.;
Nuzhdin, Sergey V.

Publication type:

Article

Modeling of Flowering Time in Vigna radiata with Artificial Image Objects, Convolutional Neural Network and Random Forest.

Published in:

Plants (2223-7747), 2022, v. 11, n. 23, p. 3327, doi. 10.3390/plants11233327

By:

Bavykina, Maria;
Kostina, Nadezhda;
Lee, Cheng-Ruei;
Schafleitner, Roland;
Bishop-von Wettberg, Eric;
Nuzhdin, Sergey V.;
Samsonova, Maria;
Gursky, Vitaly;
Kozlov, Konstantin

Publication type:

Article

The mutation atlas of giant kelp (Macrocystis pyrifera): a mutation database resource for natural knockouts.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2024.1338572

By:

Diesel, Jose Francisco;
Molano, Gary;
Nuzhdin, Sergey V.

Publication type:

Article

Investigating the relationship between microbial network features of giant kelp "seedbank" cultures and subsequent farm performance.

Published in:

PLoS ONE, 2024, v. 19, n. 3, p. 1, doi. 10.1371/journal.pone.0295740

By:

Osborne, Melisa G.;
Simons, Ariel Levi;
Molano, Gary;
Tolentino, Bernadeth;
Singh, Anupam;
Arismendi, Gabriel J. Montecinos;
Alberto, Filipe;
Nuzhdin, Sergey V.

Publication type:

Article

Bayesian model selection for the Drosophila gap gene network.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2888-0

By:

Zubair, Asif;
Rosen, I. Gary;
Nuzhdin, Sergey V.;
Marjoram, Paul

Publication type:

Article

Contrasting Patterns of Sequence Evolution at the Functionally Redundant bric à brac Paralogs in Drosophila melanogaster.

Published in:

Journal of Molecular Evolution, 2009, v. 69, n. 2, p. 194, doi. 10.1007/s00239-009-9265-y

By:

Bickel, Ryan D.;
Schackwitz, Wendy S.;
Pennacchio, Len A.;
Nuzhdin, Sergey V.;
Kopp, Artyom

Publication type:

Article

Structural, Optical, and Photoelectric Properties of Silicon Implanted with Indium and Antimony Ions and Subjected to Pulsed Annealing.

Published in:

Journal of Applied Spectroscopy, 2025, v. 91, n. 6, p. 1225, doi. 10.1007/s10812-025-01841-0

By:

Batalov, R. I.;
Bazarov, V. V.;
Nuzhdin, V. I.;
Valeev, V. F.;
Novikov, H. A.;
Shustov, V. A.;
Galkin, K. N.;
Chistokhin, I. B.;
Komarov, F. F.;
Milchanin, O. V.;
Parkhomenko, I. N.

Publication type:

Article

Optical Characteristics of the Near-Surface Layer of Rutile Implanted with Cobalt Ions.

Published in:

Journal of Applied Spectroscopy, 2023, v. 90, n. 4, p. 837, doi. 10.1007/s10812-023-01604-9

By:

Bazarov, V. V.;
Begishev, E. M.;
Valeev, V. F.;
Nuzhdin, V. I.;
Khaibullin, R. I.

Publication type:

Article

Optical Properties of Polyamide Films Modified by Implantation of Cobalt Ions.

Published in:

Journal of Applied Spectroscopy, 2020, v. 87, n. 3, p. 476, doi. 10.1007/s10812-020-01026-x

By:

Bazarov, V. V.;
Bumai, Y. A.;
Valeev, V. F.;
Golovchuk, V. I.;
Lukashevich, M. G.;
Nuzhdin, V. I.;
Odzhaev, V. B.;
Kharchenko, A. A.;
Khaibullin, R. I.

Publication type:

Article

Transmission and Reflection Spectra of Zinc Oxide Implanted with a High Dose of Cobalt Ions.

Published in:

Journal of Applied Spectroscopy, 2020, v. 86, n. 6, p. 1039, doi. 10.1007/s10812-020-00936-0

By:

Bumai, Yu. A.;
Valeev, V. F.;
Golovchuk, V. I.;
Gumarov, A. I.;
Lukashevich, M. G.;
Nuzhdin, V. I.;
Odzhaev, V. B.;
Kharchenko, A. A.;
Khaibullin, R. I.

Publication type:

Article

Spectral Ellipsometry Study of Silicon Surfaces Implanted with Oxygen and Helium Ions.

Published in:

Journal of Applied Spectroscopy, 2019, v. 86, n. 1, p. 134, doi. 10.1007/s10812-019-00793-6

By:

Bazarov, V. V.;
Nuzhdin, V. I.;
Valeev, V. F.;
Lyadov, N. M.

Publication type:

Article

Characterization of the Surface of Silver Ion-Implanted Silicon by Optical Reflectance.

Published in:

Journal of Applied Spectroscopy, 2017, v. 84, n. 5, p. 785, doi. 10.1007/s10812-017-0545-9

By:

Stepanov, A.;
Vorobev, V.;
Nuzhdin, V.;
Valeev, V.;
Osin, Yu.

Publication type:

Article

Spectral Ellipsometry and Electron Backscatter Diffraction Analyses of Silicon Surfaces Implanted with Silver Ions.

Published in:

Journal of Applied Spectroscopy, 2016, v. 83, n. 1, p. 47, doi. 10.1007/s10812-016-0240-2

By:

Bazarov, V.;
Nuzhdin, V.;
Valeev, V.;
Vorobev, V.;
Osin, Yu.;
Stepanov, A.

Publication type:

Article

Photoluminescence of Composite Films of Poly( N-Vinylcarbazole) with CdSe/CdS Core/Shell Quantum Dots Located Near the Layer of Silver Nanoparticles on a Dielectric Material.

Published in:

Journal of Applied Spectroscopy, 2015, v. 82, n. 5, p. 773, doi. 10.1007/s10812-015-0179-8

By:

Shamilov, R.;
Nuzhdin, V.;
Valeev, V.;
Galyametdinov, Yu.;
Stepanov, A.

Publication type:

Article

Optical Properties of Polyimide Films Implanted with Ni Ions.

Published in:

Journal of Applied Spectroscopy, 2014, v. 81, n. 2, p. 188, doi. 10.1007/s10812-014-9908-7

By:

Bumai, Yu.;
Dolgikh, N.;
Kharchenko, A.;
Valeev, V.;
Nuzhdin, V.;
Khaibullin, R.;
Nagim, F.;
Lukashevich, M.;
Odzhaev, V.

Publication type:

Article

Optical characteristics of composites obtained by ion implantation of silver ions in polyethylene terephthalate.

Published in:

Journal of Applied Spectroscopy, 2012, v. 79, n. 5, p. 773, doi. 10.1007/s10812-012-9669-0

By:

Bumai, Yu.;
Volobuev, V.;
Valeev, V.;
Dolgikh, N.;
Lukashevich, M.;
Khaibullin, R.;
Nuzhdin, V.;
Odzhaev, V.

Publication type:

Article

Expression of fatty acid and triacylglycerol synthesis genes in interspecific hybrids of oil palm.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-73170-5

By:

Ting, Ngoot-Chin;
Sherbina, Katrina;
Khoo, Jia-Shiun;
Kamaruddin, Katialisa;
Chan, Pek-Lan;
Chan, Kuang-Lim;
Halim, Mohd Amin Ab;
Sritharan, Kandha;
Yaakub, Zulkifli;
Mayes, Sean;
Massawe, Festo;
Chang, Peter L.;
Nuzhdin, Sergey V.;
Sambanthamurthi, Ravigadevi;
Singh, Rajinder

Publication type:

Article

Post-GWAS: where next? More samples, more SNPs or more biology?

Published in:

Heredity, 2014, v. 112, n. 1, p. 79, doi. 10.1038/hdy.2013.52

By:

Marjoram, P;
Zubair, A;
Nuzhdin, S V

Publication type:

Article

Genetic variation in the Yolk protein expression network of Drosophila melanogaster: sex-biased negative correlations with longevity.

Published in:

Heredity, 2012, v. 109, n. 4, p. 226, doi. 10.1038/hdy.2012.34

By:

Tarone, A M;
McIntyre, L M;
Harshman, L G;
Nuzhdin, S V

Publication type:

Article

Dynamical Modeling of the Core Gene Network Controlling Flowering Suggests Cumulative Activation From the FLOWERING LOCUS T Gene Homologs in Chickpea.

Published in:

Frontiers in Genetics, 2018, p. N.PAG, doi. 10.3389/fgene.2018.00547

By:

Gursky, Vitaly V.;
Kozlov, Konstantin N.;
Nuzhdin, Sergey V.;
Samsonova, Maria G.

Publication type:

Article

POPULATION DIFFERENTIATION FOR GERMINATION AND EARLY SEEDLING ROOT GROWTH TRAITS UNDER SALINE CONDITIONS IN THE ANNUAL LEGUME MEDICAGO TRUNCATULA (FABACEAE).

Published in:

American Journal of Botany, 2014, v. 101, n. 3, p. 488, doi. 10.3732/ajb.1300285

By:

Cordeiro, Matilde A.;
Moriuchi, Ken S.;
Fotinos, Tonya D.;
Miller, Kelsey E.;
Nuzhdin, Sergey V.;
Wettberg, Eric J.;
Cook, Douglas R.

Publication type:

Article

Multi-tissue RNA-Seq Analysis and Long-read-based Genome Assembly Reveal Complex Sex-specific Gene Regulation and Molecular Evolution in the Manila Clam.

Published in:

Genome Biology & Evolution, 2022, v. 14, n. 12, p. 1, doi. 10.1093/gbe/evac171

By:

Xu, Ran;
Martelossi, Jacopo;
Smits, Morgan;
Iannello, Mariangela;
Peruzza, Luca;
Babbucci, Massimiliano;
Milan, Massimo;
Dunham, Joseph P;
Breton, Sophie;
Milani, Liliana;
Nuzhdin, Sergey V;
Bargelloni, Luca;
Passamonti, Marco;
Ghiselli, Fabrizio

Publication type:

Article

Comparative Transcriptomics in Two Bivalve Species Offers Different Perspectives on the Evolution of Sex-Biased Genes.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 6, p. 1389, doi. 10.1093/gbe/evy082

By:

Ghiselli, Fabrizio;
Iannello, Mariangela;
Puccio, Guglielmo;
Chang, Peter L.;
Plazzi, Federico;
Nuzhdin, Sergey V.;
Passamonti, Marco

Publication type:

Article

What the X Has to Do with It: Differences in Regulatory Variability between the Sexes in Drosophila simulans.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 4, p. 818, doi. 10.1093/gbe/evu060

By:

Graze, Rita M.;
McIntyre, Lauren M.;
Morse, Alison M.;
Boyd, Bret M.;
Nuzhdin, Sergey V.;
Wayne, Marta L.

Publication type:

Article

Paternally Transmitted Mitochondria Express a New Gene of Potential Viral Origin.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 2, p. 391, doi. 10.1093/gbe/evu021

By:

Milani, Liliana;
Ghiselli, Fabrizio;
Maurizii, Maria Gabriella;
Nuzhdin, Sergey V.;
Passamonti, Marco

Publication type:

Article

Structure, Transcription, and Variability of Metazoan Mitochondrial Genome: Perspectives from an Unusual Mitochondrial Inheritance System.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 8, p. 1535, doi. 10.1093/gbe/evt112

By:

Ghiselli, Fabrizio;
Milani, Liliana;
Guerra, Davide;
Chang, Peter L.;
Breton, Sophie;
Nuzhdin, Sergey V.;
Passamonti, Marco

Publication type:

Article

The wright stuff: reimagining path analysis reveals novel components of the sex determination hierarchy in drosophila melanogaster.

Published in:

BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0200-0

By:

Fear, Justin M.;
Arbeitman, Michelle N.;
Salomon, Matthew P.;
Dalton, Justin E.;
Tower, John;
Nuzhdin, Sergey V.;
McIntyre, Lauren M.

Publication type:

Article

Natural variation of gene models in Drosophila melanogaster.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1415-6

By:

Kurmangaliyev, Yerbol Z.;
Favorov, Alexander V.;
Osman, Noha M.;
Lehmann, Kjong-Van;
Campo, Daniel;
Salomon, Matthew P.;
Tower, John;
Gelfand, Mikhail S.;
Nuzhdin, Sergey V.

Publication type:

Article

The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 955, doi. 10.1186/1471-2164-15-1160

By:

Friesen, Maren L.;
von Wettberg, Eric J. B.;
Badri, Mounawer;
Moriuchi, Ken S.;
Barhoumi, Fathi;
Chang, Peter L.;
Cuellar-Ortiz, Sonia;
Cordeiro, Matilde A.;
Vu, Wendy T.;
Arraouadi, Soumaya;
Djébali, Naceur;
Zribi, Kais;
Badri, Yazid;
Porter, Stephanie S.;
Aouani, Mohammed Elarbi;
Cook, Douglas R.;
Strauss, Sharon Y.;
Nuzhdin, Sergey V.

Publication type:

Article

RNA-seq: technical variability and sampling.

Published in:

BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-293

By:

McIntyre, Lauren M;
Lopiano, Kenneth K;
Morse, Alison M;
Amin, Victor;
Oberg, Ann L;
Young, Linda J;
Nuzhdin, Sergey V

Publication type:

Article

Genomic exaptation enables Lasius niger adaptation to urban environments.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-016-0867-x

By:

Konorov, Evgenii A.;
Nikitin, Mikhail A.;
Mikhailov, Kirill V.;
Lysenkov, Sergey N.;
Belenky, Mikhail;
Chang, Peter L.;
Nuzhdin, Sergey V.;
Scobeyeva, Victoria A.

Publication type:

Article

In silico evolution of the Drosophila gap gene regulatory sequence under elevated mutational pressure.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-016-0866-y

By:

Chertkova, Aleksandra A.;
Schiffman, Joshua S.;
Nuzhdin, Sergey V.;
Kozlov, Konstantin N.;
Samsonova, Maria G.;
Gursky, Vitaly V.

Publication type:

Article

Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome.

Published in:

BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-2

By:

Mezey, Jason G.;
Nuzhdin, Sergey V.;
Fangfei Ye;
Jones, Corbin D.

Publication type:

Article

Crystal-Chemical Features of Diamonds Implanted with Helium Ions.

Published in:

Crystallography Reports, 2018, v. 63, n. 3, p. 327, doi. 10.1134/S1063774518030161

By:

Lopatin, O. N.;
Nikolaev, A. G.;
Valeev, V. F.;
Nuzhdin, V. I.;
Khaibullin, R. I.

Publication type:

Article

Social effects for locomotion vary between environments in Drosophila melanogaster females.

Published in:

Evolution, 2017, v. 71, n. 7, p. 1765, doi. 10.1111/evo.13266

By:

Signor, Sarah A.;
Abbasi, Mohammad;
Marjoram, Paul;
Nuzhdin, Sergey V.

Publication type:

Article

GENOMIC BASIS OF AGING AND LIFE-HISTORY EVOLUTION IN DROSOPHILA MELANOGASTER.

Published in:

Evolution, 2012, v. 66, n. 11, p. 3390, doi. 10.1111/j.1558-5646.2012.01710.x

By:

Remolina, Silvia C.;
Chang, Peter L.;
Leips, Jeff;
Nuzhdin, Sergey V.;
Hughes, Kimberly A.

Publication type:

Article

EXPRESSION OF DEFENSE GENES IN DROSOPHILA EVOLVES UNDER A DIFFERENT SELECTIVE REGIME FROM EXPRESSION OF OTHER GENES.

Published in:

Evolution, 2011, v. 65, n. 4, p. 1068, doi. 10.1111/j.1558-5646.2010.01197.x

By:

Wayne, Marta L.;
Pienaar, Jason;
Telonis-Scott, Marina;
Sylvestre, Lyvie-Sara;
Nuzhdin, Sergey V.;
McIntyre, Lauren M.

Publication type:

Article

A Pipeline for Classifying Deleterious Coding Mutations in Agricultural Plants.

Published in:

Frontiers in Plant Science, 2018, p. N.PAG, doi. 10.3389/fpls.2018.01734

By:

Kovalev, Maxim S.;
Igolkina, Anna A.;
Samsonova, Maria G.;
Nuzhdin, Sergey V.

Publication type:

Article

Salinity Adaptation and the Contribution of Parental Environmental Effects in Medicago truncatula.

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0150350

By:

Moriuchi, Ken S.;
Friesen, Maren L.;
Cordeiro, Matilde A.;
Badri, Mounawer;
Vu, Wendy T.;
Main, Bradley J.;
Aouani, Mohamed Elarbi;
Nuzhdin, Sergey V.;
Strauss, Sharon Y.;
von Wettberg, Eric J. B.

Publication type:

Article

Historical Routes for Diversification of Domesticated Chickpea Inferred from Landrace Genomics.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 6, p. 1, doi. 10.1093/molbev/msad110

By:

Igolkina, Anna A;
Noujdina, Nina V;
Vishnyakova, Margarita;
Longcore, Travis;
Wettberg, Eric von;
Nuzhdin, Sergey V;
Samsonova, Maria G

Publication type:

Article

Sex-Biased Expression Is Associated With Chromatin State in Drosophila melanogaster and Drosophila simulans.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 5, p. 1, doi. 10.1093/molbev/msad078

By:

Nanni, Adalena V;
Martinez, Natalie;
Graze, Rita;
Morse, Alison;
Newman, Jeremy R B;
Jain, Vaibhav;
Vlaho, Srna;
Signor, Sarah;
Nuzhdin, Sergey V;
Renne, Rolf;
McIntyre, Lauren M

Publication type:

Article

Analysis of Genetic Variation Indicates DNA Shape Involvement in Purifying Selection.

Published in:

Molecular Biology & Evolution, 2018, v. 35, n. 8, p. 1958, doi. 10.1093/molbev/msy099

By:

Wang, Xiaofei;
Zhou, Tianyin;
Wunderlich, Zeba;
Maurano, Matthew T;
DePace, Angela H;
Nuzhdin, Sergey V;
Rohs, Remo

Publication type:

Article

Transposable elements in clonal lineages: lethal hangover from sex.

Published in:

Biological Journal of the Linnean Society, 2003, v. 79, n. 1, p. 33, doi. 10.1046/j.1095-8312.2003.00188.x

By:

NUZHDIN, SERGEY V.;
PETROV, DMITRI A.

Publication type:

Article

Parental environments and interactions with conspecifics alter salinity tolerance of offspring in the annual Medicago truncatula.

Published in:

Journal of Ecology, 2013, v. 101, n. 5, p. 1281, doi. 10.1111/1365-2745.12125

By:

Castro, Brenna M.;
Moriuchi, Ken S.;
Friesen, Maren L.;
Badri, Mounawer;
Nuzhdin, Sergey V.;
Strauss, Sharon Y.;
Cook, Douglas R.;
Wettberg, Eric;
Klinkhamer, Peter

Publication type:

Article

Ag -ion implantation of silicon.

Published in:

Phosphorus, Sulfur & Silicon & the Related Elements, 2018, v. 193, n. 2, p. 110, doi. 10.1080/10426507.2017.1417307

By:

Stepanov, A. L.;
Nuzhdin, V. I.;
Valeev, V. F.;
Vorobev, V. V.;
Osin, Y. N.

Publication type:

Article

Microscopic Examination of the Silicon Surface Subjected to High-Dose Silver Implantation.

Published in:

Technical Physics, 2019, v. 64, n. 2, p. 195, doi. 10.1134/S1063784219020270

By:

Vorob'ev, V. V.;
Rogov, A. M.;
Osin, Yu. N.;
Nuzhdin, V. I.;
Valeev, V. F.;
Eidel'man, K. B.;
Tabachkova, N. Yu.;
Ermakov, M. A.;
Stepanov, A. L.

Publication type:

Article

Fabrication of composite based on GeSi with Ag nanoparticles using ion implantation.

Published in:

Technical Physics, 2016, v. 61, n. 12, p. 1861, doi. 10.1134/S1063784216120069

By:

Batalov, R.;
Vorobev, V.;
Nuzhdin, V.;
Valeev, V.;
Bayazitov, R.;
Lyadov, N.;
Osin, Yu.;
Stepanov, A.

Publication type:

Article

Enhancement of photoluminescence of the CdSe/CdS quantum dots on quartz substrates in the presence of silver nanoparticles.

Published in:

Technical Physics, 2016, v. 61, n. 11, p. 1698, doi. 10.1134/S1063784216110220

By:

Shamilov, R.;
Nuzhdin, V.;
Valeev, V.;
Galyametdinov, Yu.;
Stepanov, A.

Publication type:

Article