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CHIKV infection reprograms codon optimality to favor viral RNA translation by altering the tRNA epitranscriptome.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31835-x
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High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24436-7
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Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing.
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- Nature Biotechnology, 2024, v. 42, n. 1, p. 72, doi. 10.1038/s41587-023-01743-6
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Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing.
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- Nature Biotechnology, 2021, v. 39, n. 10, p. 1278, doi. 10.1038/s41587-021-00915-6
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ModPhred: an integrative toolkit for the analysis and storage of nanopore sequencing DNA and RNA modification data.
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- Bioinformatics, 2022, v. 38, n. 1, p. 257, doi. 10.1093/bioinformatics/btab539
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N<sup>6</sup>-methyladenosine modification is not a general trait of viral RNA genomes.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46278-9
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- Article
Spectral libraries from nucleobases and deoxyribonucleosides facilitate the identification of ribonucleosides by nano‐flow liquid chromatography–tandem mass spectrometry.
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- Rapid Communications in Mass Spectrometry: RCM, 2024, v. 38, n. 13, p. 1, doi. 10.1002/rcm.9759
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Accurate detection of m<sup>6</sup>A RNA modifications in native RNA sequences.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11713-9
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A high-throughput screening and computation platform for identifying synthetic promoters with enhanced cell-state specificity (SPECS).
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10912-8
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- Article
Elucidation of Codon Usage Signatures across the Domains of Life.
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- Molecular Biology & Evolution, 2019, v. 36, n. 10, p. 2328, doi. 10.1093/molbev/msz124
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- Article
Selective Inhibition of an Apicoplastic Aminoacyl-tRNA Synthetase from Plasmodium falciparum.
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- ChemBioChem, 2013, v. 14, n. 4, p. 499, doi. 10.1002/cbic.201200620
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- Article
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.
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- Frontiers in Genetics, 2020, p. 1, doi. 10.3389/fgene.2020.00211
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- Article
Elucidation of the Epitranscriptomic RNA Modification Landscape of Chikungunya Virus.
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- Viruses (1999-4915), 2024, v. 16, n. 6, p. 945, doi. 10.3390/v16060945
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- Article
Comprehensive map of ribosomal 2′-O-methylation and C/D box snoRNAs in Drosophila melanogaster.
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- Nucleic Acids Research, 2024, v. 52, n. 6, p. 2848, doi. 10.1093/nar/gkae139
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- Article
Dynamic interplay between RPL3- and RPL3L-containing ribosomes modulates mitochondrial activity in the mammalian heart.
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- Nucleic Acids Research, 2023, v. 51, n. 11, p. 5301, doi. 10.1093/nar/gkad121
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- Article
Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins.
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- Nucleic Acids Research, 2021, v. 49, n. 12, p. 7011, doi. 10.1093/nar/gkab461
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- Article
A genomics method to identify pathogenicity-related proteins. Application to aminoacyl-tRNA synthetase-like proteins
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- FEBS Letters, 2010, v. 584, n. 2, p. 460, doi. 10.1016/j.febslet.2009.11.016
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Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02009-z
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- Article
SwiSpot: modeling riboswitches by spotting out switching sequences.
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- Bioinformatics, 2016, v. 32, n. 21, p. 3252, doi. 10.1093/bioinformatics/btw401
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- Article