Works matching AU Nordström, Karl

Results: 37

Evening Expression of Arabidopsis GIGANTEA Is Controlled by Combinatorial Interactions among Evolutionarily Conserved Regulatory Motifs.

Published in:

Plant Cell, 2014, v. 26, n. 10, p. 3999, doi. 10.1105/tpc.114.129437

By:

Berns, Markus C.;
Nordström, Karl;
Cremer, Frédéric;
Tóth, Réka;
Hartke, Martin;
Simon, Samson;
Klasen, Jonas R.;
Bürstel, Ingmar;
Coupland, George

Publication type:

Article

Analysis of the Arabidopsis Shoot Meristem Transcriptome during Floral Transition Identifies Distinct Regulatory Patterns and a Leucine-Rich Repeat Protein That Promotes Flowering.

Published in:

Plant Cell, 2012, v. 24, n. 2, p. 444, doi. 10.1105/tpc.111.092791

By:

Torti, Stefano;
Fornara, Fabio;
Vincent, Coral;
Andrés, Fernando;
Nordström, Karl;
Göbel, Ulrike;
Knoll, Daniela;
Schoof, Heiko;
Coupland, George

Publication type:

Article

Identification and Characterization of Post-activated B Cells in Systemic Autoimmune Diseases.

Published in:

Frontiers in Immunology, 2019, p. 1, doi. 10.3389/fimmu.2019.02136

By:

Weißenberg, Sarah Y.;
Szelinski, Franziska;
Schrezenmeier, Eva;
Stefanski, Ana-Luisa;
Wiedemann, Annika;
Rincon-Arevalo, Hector;
Welle, Anna;
Jungmann, Annemarie;
Nordström, Karl;
Walter, Jörn;
Imgenberg-Kreuz, Juliana;
Nordmark, Gunnel;
Rönnblom, Lars;
Bachali, Prathyusha;
Catalina, Michelle D.;
Grammer, Amrie C.;
Lipsky, Peter E.;
Lino, Andreia C.;
Dörner, Thomas

Publication type:

Article

Differential degradation of RNA species by autophagy-related pathways in Arabidopsis.

Published in:

Journal of Experimental Botany, 2021, v. 72, n. 20, p. 6867, doi. 10.1093/jxb/erab321

By:

Hickl, Daniel;
Drews, Franziska;
Girke, Christopher;
Zimmer, David;
Mühlhaus, Timo;
Hauth, Jan;
Nordström, Karl;
Trentmann, Oliver;
Neuhaus, Ekkehard H;
Scheuring, David;
Fehlmann, Tobias;
Keller, Andreas;
Simon, Martin;
Möhlmann, Torsten

Publication type:

Article

Environmental Temperature Controls Accumulation of Transacting siRNAs Involved in Heterochromatin Formation.

Published in:

Genes, 2018, v. 9, n. 2, p. 117, doi. 10.3390/genes9020117

By:

Pirritano, Marcello;
Götz, Ulrike;
Karunanithi, Sivarajan;
Nordström, Karl;
Schulz, Marcel H.;
Simon, Martin

Publication type:

Article

Human Cytomegalovirus Drives Epigenetic Imprinting of the IFNG Locus in NKG2Chi Natural Killer Cells.

Published in:

PLoS Pathogens, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.ppat.1004441

By:

Luetke-Eversloh, Merlin;
Hammer, Quirin;
Durek, Pawel;
Nordström, Karl;
Gasparoni, Gilles;
Pink, Matthias;
Hamann, Alf;
Walter, Jörn;
Chang, Hyun-Dong;
Dong, Jun;
Romagnani, Chiara

Publication type:

Article

Neuronal deficiency of p38α‐MAPK ameliorates symptoms and pathology of APP or Tau‐transgenic Alzheimer's mouse models.

Published in:

FASEB Journal, 2020, v. 34, n. 7, p. 9628, doi. 10.1096/fj.201902731RR

By:

Schnöder, Laura;
Gasparoni, Gilles;
Nordström, Karl;
Schottek, Andrea;
Tomic, Inge;
Christmann, Anne;
Schäfer, Karl H.;
Menger, Michael D.;
Walter, Jörn;
Fassbender, Klaus;
Liu, Yang

Publication type:

Article

Constraining new resonant physics with top spin polarisation information.

Published in:

European Physical Journal C -- Particles & Fields, 2017, v. 77, n. 6, p. 1, doi. 10.1140/epjc/s10052-017-4964-9

By:

Englert, Christoph;
Ferrando, James;
Nordström, Karl

Publication type:

Article

LHAPDF6: parton density access in the LHC precision era.

Published in:

European Physical Journal C -- Particles & Fields, 2015, v. 75, n. 3, p. 1, doi. 10.1140/epjc/s10052-015-3318-8

By:

Buckley, Andy;
Ferrando, James;
Lloyd, Stephen;
Nordström, Karl;
Page, Ben;
Rüfenacht, Martin;
Schönherr, Marek;
Watt, Graeme

Publication type:

Article

Resident memory CD4+ T lymphocytes mobilize from bone marrow to contribute to a systemic secondary immune reaction.

Published in:

European Journal of Immunology, 2022, v. 52, n. 5, p. 737, doi. 10.1002/eji.202149726

By:

Cendón, Carla;
Du, Weijie;
Durek, Pawel;
Liu, Yuk‐Chien;
Alexander, Tobias;
Serene, Lindsay;
Yang, Xinyi;
Gasparoni, Gilles;
Salhab, Abdulrahman;
Nordström, Karl;
Lai, Tina;
Schulz, Axel R.;
Rao, Anna;
Heinz, Gitta A.;
Stefanski, Ana L.;
Claußnitzer, Anne;
Siewert, Katherina;
Dörner, Thomas;
Chang, Hyun‐Dong;
Volk, Hans‐Dieter

Publication type:

Article

Alterations in the hepatocyte epigenetic landscape in steatosis.

Published in:

Epigenetics & Chromatin, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13072-023-00504-8

By:

Maji, Ranjan Kumar;
Czepukojc, Beate;
Scherer, Michael;
Tierling, Sascha;
Cadenas, Cristina;
Gianmoena, Kathrin;
Gasparoni, Nina;
Nordström, Karl;
Gasparoni, Gilles;
Laggai, Stephan;
Yang, Xinyi;
Sinha, Anupam;
Ebert, Peter;
Falk-Paulsen, Maren;
Kinkley, Sarah;
Hoppstädter, Jessica;
Chung, Ho-Ryun;
Rosenstiel, Philip;
Hengstler, Jan G.;
Walter, Jörn

Publication type:

Article

Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters.

Published in:

Epigenetics & Chromatin, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13072-018-0236-7

By:

Behjati Ardakani, Fatemeh;
Kattler, Kathrin;
Nordström, Karl;
Gasparoni, Nina;
Gasparoni, Gilles;
Fuchs, Sarah;
Sinha, Anupam;
Barann, Matthias;
Ebert, Peter;
Fischer, Jonas;
Hutter, Barbara;
Zipprich, Gideon;
Imbusch, Charles D.;
Felder, Bärbel;
Eils, Jürgen;
Brors, Benedikt;
Lengauer, Thomas;
Manke, Thomas;
Rosenstiel, Philip;
Walter, Jörn

Publication type:

Article

Dysregulation of COVID-19 related gene expression in the COPD lung.

Published in:

2021

By:

Watson, Alastair;
Öberg, Lisa;
Angermann, Bastian;
Spalluto, C. Mirella;
Hühn, Michael;
Burke, Hannah;
Cellura, Doriana;
Freeman, Anna;
Muthas, Daniel;
Etal, Damla;
Belfield, Graham;
Karlsson, Fredrik;
Nordström, Karl;
Ostridge, Kris;
Staples, Karl J.;
Wilkinson, Tom;
the MICA II Studygroup;
Angerman, Bastian;
Ashenden, Stephanie;
Bawden, Sarah

Publication type:

journal article

Transcriptome Kinetics of Saccharomyces cerevisiae in Response to Viral Killer Toxin K1.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.01102

By:

Gier, Stefanie;
Simon, Martin;
Nordström, Karl;
Khalifa, Salem;
Schulz, Marcel H.;
Schmitt, Manfred J.;
Breinig, Frank

Publication type:

Article

Elevated salicylic acid levels conferred by increased expression of ISOCHORISMATE SYNTHASE 1 contribute to hyperaccumulation of SUMO1 conjugates in the Arabidopsis mutant early in short days 4.

Published in:

Plant Journal, 2014, v. 79, n. 2, p. 206, doi. 10.1111/tpj.12549

By:

Villajuana‐Bonequi, Mitzi;
Elrouby, Nabil;
Nordström, Karl;
Griebel, Thomas;
Bachmair, Andreas;
Coupland, George

Publication type:

Article

Synteny-based mapping-by-sequencing enabled by targeted enrichment.

Published in:

Plant Journal, 2012, v. 71, n. 3, p. 517, doi. 10.1111/j.1365-313X.2012.04993.x

By:

Galvão, Vinicius C.;
Nordström, Karl J.V.;
Lanz, Christa;
Sulz, Patric;
Mathieu, Johannes;
Posé, David;
Schmid, Markus;
Weigel, Detlef;
Schneeberger, Korbinian

Publication type:

Article

Epigenomic map of human liver reveals principles of zonated morphogenic and metabolic control.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06611-5

By:

Brosch, Mario;
Kattler, Kathrin;
Herrmann, Alexander;
von Schönfels, Witigo;
Nordström, Karl;
Seehofer, Daniel;
Damm, Georg;
Becker, Thomas;
Zeissig, Sebastian;
Nehring, Sophie;
Reichel, Fabian;
Moser, Vincent;
Thangapandi, Raghavan Veera;
Stickel, Felix;
Baretton, Gustavo;
Röcken, Christoph;
Muders, Michael;
Matz-Soja, Madlen;
Krawczak, Michael;
Gasparoni, Gilles

Publication type:

Article

A general concept for consistent documentation of computational analyses.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav050

By:

Ebert, Peter;
Müller, Fabian;
Nordström, Karl;
Lengauer, Thomas;
Schulz, Marcel H.

Publication type:

Article

Feeding exogenous dsRNA interferes with endogenous sRNA accumulation in Paramecium.

Published in:

DNA Research, 2020, v. 27, n. 1, p. 1, doi. 10.1093/dnares/dsaa005

By:

Karunanithi, Sivarajan;
Oruganti, Vidya;
Wijn, Raphael de;
Drews, Franziska;
Cheaib, Miriam;
Nordström, Karl;
Simon, Martin;
Schulz, Marcel H

Publication type:

Article

Epigenetic regulation of serotype expression antagonizes transcriptome dynamics in Paramecium tetraurelia.

Published in:

DNA Research, 2015, v. 22, n. 4, p. 293, doi. 10.1093/dnares/dsv014

By:

Cheaib, Miriam;
Amirabad, Azim Dehghani;
Nordström, Karl J. V.;
Schulz, Marcel H.;
Simon, Martin

Publication type:

Article

Genome-Wide Analysis of the Nucleosome Landscape in Individuals with Coffin-Siris Syndrome.

Published in:

Cytogenetic & Genome Research, 2019, v. 159, n. 1, p. 1, doi. 10.1159/000503266

By:

Kalmbach, alexander;
Schröder, Christopher;
Klein-Hitpass, Ludger;
Nordström, Karl;
Ulz, Peter;
Heitzer, Ellen;
Speicher, Michael R.;
Rahmann, Sven;
Wieczorek, Dagmar;
Horsthemke, Bernhard;
Bramswig, Nuria C.

Publication type:

Article

Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.609891

By:

Kressler, Christopher;
Gasparoni, Gilles;
Nordström, Karl;
Hamo, Dania;
Salhab, Abdulrahman;
Dimitropoulos, Christoforos;
Tierling, Sascha;
Reinke, Petra;
Volk, Hans-Dieter;
Walter, Jörn;
Hamann, Alf;
Polansky, Julia K.

Publication type:

Article

A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1510-5

By:

Salhab, Abdulrahman;
Nordström, Karl;
Gasparoni, Gilles;
Kattler, Kathrin;
Ebert, Peter;
Ramirez, Fidel;
Arrigoni, Laura;
Müller, Fabian;
Polansky, Julia K.;
Cadenas, Cristina;
G.Hengstler, Jan;
Lengauer, Thomas;
Manke, Thomas;
Walter, Jörn

Publication type:

Article

The solute carrier (SLC) complement of the human genome: Phylogenetic classification reveals four major families

Published in:

FEBS Letters, 2008, v. 582, n. 27, p. 3811, doi. 10.1016/j.febslet.2008.10.016

By:

Fredriksson, Robert;
Nordström, Karl J.V.;
Stephansson, Olga;
Hägglund, Maria G.A.;
Schiöth, Helgi B.

Publication type:

Article

Increased chromatin accessibility facilitates intron retention in specific cell differentiation states.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11563, doi. 10.1093/nar/gkac994

By:

Petrova, Veronika;
Song, Renhua;
Consortium, DEEP;
Nordström, Karl J V;
Walter, Jörn;
Wong, Justin J L;
Armstrong, Nicola J;
Rasko, John E J;
Schmitz, Ulf

Publication type:

Article

Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 20, p. 10580, doi. 10.1093/nar/gkz799

By:

Nordström, Karl J V;
Schmidt, Florian;
Gasparoni, Nina;
Salhab, Abdulrahman;
Gasparoni, Gilles;
Kattler, Kathrin;
Müller, Fabian;
Ebert, Peter;
Costa, Ivan G;
consortium, DEEP;
Pfeifer, Nico;
Lengauer, Thomas;
Schulz, Marcel H;
Walter, Jörn

Publication type:

Article

Exogenous RNAi mechanisms contribute to transcriptome adaptation by phased siRNA clusters in Paramecium.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 15, p. 8036, doi. 10.1093/nar/gkz553

By:

Karunanithi, Sivarajan;
Oruganti, Vidya;
Marker, Simone;
Rodriguez-Viana, Angela M;
Drews, Franziska;
Pirritano, Marcello;
Nordström, Karl;
Simon, Martin;
Schulz, Marcel H

Publication type:

Article

Sodium is an ionic checkpoint for human TH2 cells and shapes the atopic skin microenvironment.

Published in:

Science Translational Medicine, 2019, v. 11, n. 480, p. N.PAG, doi. 10.1126/scitranslmed.aau0683

By:

Matthias, Julia;
Maul, Julia;
Noster, Rebecca;
Meinl, Hanna;
Chao, Ying-Yin;
Gerstenberg, Heiko;
Jeschke, Florian;
Gasparoni, Gilles;
Welle, Anna;
Walter, Jörn;
Nordström, Karl;
Eberhardt, Klaus;
Renisch, Dennis;
Donakonda, Sainitin;
Knolle, Percy;
Soll, Dominik;
Grabbe, Stephan;
Garzorz-Stark, Natalie;
Eyerich, Kilian;
Biedermann, Tilo

Publication type:

Article

Transcriptomics of a KDELR1 knockout cell line reveals modulated cell adhesion properties.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-47027-5

By:

Blum, Andrea;
Khalifa, Saleem;
Nordström, Karl;
Simon, Martin;
Schulz, Marcel H.;
Schmitt, Manfred J.

Publication type:

Article

User guide for mapping-by-sequencing in Arabidopsis.

Published in:

Genome Biology, 2013, v. 14, n. 6, p. 1, doi. 10.1186/gb-2013-14-6-r61

By:

James, Geo Velikkakam;
Klasen, Jonas R.;
Nordström, Karl J.V.;
Patel, Vipul;
Salomé, Patrice A.;
Schneeberger, Korbinian;
Weigel, Detlef

Publication type:

Article

Independent HHsearch, Needleman–Wunsch-Based, and Motif Analyses Reveal the Overall Hierarchy for Most of the G Protein-Coupled Receptor Families.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 9, p. 2471, doi. 10.1093/molbev/msr061

By:

Nordström, Karl J. V.;
Sällman Almén, Markus;
Edstam, Monika M.;
Fredriksson, Robert;
Schiöth, Helgi B.

Publication type:

Article

The Solute Carrier Families Have a Remarkably Long Evolutionary History with the Majority of the Human Families Present before Divergence of Bilaterian Species.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 4, p. 1531, doi. 10.1093/molbev/msq350

By:

Höglund, Pär J.;
Nordström, Karl J.V.;
Schiöth, Helgi B.;
Fredriksson, Robert

Publication type:

Article

The Secretin GPCRs Descended from the Family of Adhesion GPCRs.

Published in:

Molecular Biology & Evolution, 2009, v. 26, n. 1, p. 71

By:

Nordström, Karl J. V.;
Lagerström, Malin C.;
Wallér, Linn M. J.;
Fredriksson, Robert;
Schiöth, Helgi B.

Publication type:

Article

Two sets of RNAi components are required for heterochromatin formation in trans triggered by truncated transgenes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 12, p. 5908, doi. 10.1093/nar/gkw267

By:

Götz, Ulrike;
Marker, Simone;
Cheaib, Miriam;
Andresen, Karsten;
Shrestha, Simon;
Durai, Dilip A.;
Nordström, Karl J.;
Schulz, Marcel H.;
Simon, Martin

Publication type:

Article

Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers.

Published in:

Nature Biotechnology, 2013, v. 31, n. 4, p. 325, doi. 10.1038/nbt.2515

By:

Nordström, Karl J V;
Albani, Maria C;
James, Geo Velikkakam;
Gutjahr, Caroline;
Hartwig, Benjamin;
Turck, Franziska;
Paszkowski, Uta;
Coupland, George;
Schneeberger, Korbinian

Publication type:

Article

SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees.

Published in:

BMC Evolutionary Biology, 2010, v. 10, p. 1, doi. 10.1186/1471-2148-10-42

By:

Hill, Tobias;
Nordström, Karl J. V.;
Thollesson, Mikael;
Säfström, Tommy M.;
Vernersson, Andreas K. E.;
Fredriksson, Robert;
Schiöth, Helgi B.

Publication type:

Article

The amphioxus (Branchiostoma floridae) genome contains a highly diversified set of G protein-coupled receptors.

Published in:

BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-9

By:

Nordström, Karl J. V.;
Fredriksson, Robert;
Schiöth, Helgi B.

Publication type:

Article

Works matching AU Nordström, Karl

Evening Expression of Arabidopsis GIGANTEA Is Controlled by Combinatorial Interactions among Evolutionarily Conserved Regulatory Motifs.

Analysis of the Arabidopsis Shoot Meristem Transcriptome during Floral Transition Identifies Distinct Regulatory Patterns and a Leucine-Rich Repeat Protein That Promotes Flowering.

Identification and Characterization of Post-activated B Cells in Systemic Autoimmune Diseases.

Differential degradation of RNA species by autophagy-related pathways in Arabidopsis.

Environmental Temperature Controls Accumulation of Transacting siRNAs Involved in Heterochromatin Formation.

Human Cytomegalovirus Drives Epigenetic Imprinting of the IFNG Locus in NKG2C<sup>hi</sup> Natural Killer Cells.

Neuronal deficiency of p38α‐MAPK ameliorates symptoms and pathology of APP or Tau‐transgenic Alzheimer's mouse models.

Constraining new resonant physics with top spin polarisation information.

LHAPDF6: parton density access in the LHC precision era.

Resident memory CD4<sup>+</sup> T lymphocytes mobilize from bone marrow to contribute to a systemic secondary immune reaction.

Alterations in the hepatocyte epigenetic landscape in steatosis.

Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters.

Dysregulation of COVID-19 related gene expression in the COPD lung.

Transcriptome Kinetics of Saccharomyces cerevisiae in Response to Viral Killer Toxin K1.

Elevated salicylic acid levels conferred by increased expression of ISOCHORISMATE SYNTHASE 1 contribute to hyperaccumulation of SUMO1 conjugates in the Arabidopsis mutant early in short days 4.

Synteny-based mapping-by-sequencing enabled by targeted enrichment.

Epigenomic map of human liver reveals principles of zonated morphogenic and metabolic control.

A general concept for consistent documentation of computational analyses.

Feeding exogenous dsRNA interferes with endogenous sRNA accumulation in Paramecium.

Epigenetic regulation of serotype expression antagonizes transcriptome dynamics in Paramecium tetraurelia.

Genome-Wide Analysis of the Nucleosome Landscape in Individuals with Coffin-Siris Syndrome.

Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype.

A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains.

The solute carrier (SLC) complement of the human genome: Phylogenetic classification reveals four major families

Increased chromatin accessibility facilitates intron retention in specific cell differentiation states.

Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data.

Exogenous RNAi mechanisms contribute to transcriptome adaptation by phased siRNA clusters in Paramecium.

Sodium is an ionic checkpoint for human T<sub>H</sub>2 cells and shapes the atopic skin microenvironment.

Transcriptomics of a KDELR1 knockout cell line reveals modulated cell adhesion properties.

User guide for mapping-by-sequencing in Arabidopsis.

Independent HHsearch, Needleman–Wunsch-Based, and Motif Analyses Reveal the Overall Hierarchy for Most of the G Protein-Coupled Receptor Families.

The Solute Carrier Families Have a Remarkably Long Evolutionary History with the Majority of the Human Families Present before Divergence of Bilaterian Species.

The Secretin GPCRs Descended from the Family of Adhesion GPCRs.

Two sets of RNAi components are required for heterochromatin formation in trans triggered by truncated transgenes.

Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers.

SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees.

The amphioxus (Branchiostoma floridae) genome contains a highly diversified set of G protein-coupled receptors.