Works matching AU Nordlund, Jessica

Results: 39

A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing.

Published in:

Life Science Alliance, 2024, v. 7, n. 8, p. 1, doi. 10.26508/lsa.202302481

By:

Wiklander, Mariya Lysenkova;
Arvidsson, Gustav;
Bunikis, Ignas;
Lundmark, Anders;
Raine, Amanda;
Marincevic-Zuniga, Yanara;
Gezelius, Henrik;
Bremer, Anna;
Feuk, Lars;
Ameur, Adam;
Nordlund, Jessica

Publication type:

Article

DNA methylation profiling of pediatric B-cell lymphoblastic leukemia with KMT2A rearrangement identifies hypomethylation at enhancer sites.

Published in:

2017

By:

Bergmann, Anke K.;
Castellano, Giancarlo;
Alten, Julia;
Ammerpohl, Ole;
Kolarova, Julia;
Nordlund, Jessica;
Martin‐Subero, Jose Ignacio;
Schrappe, Martin;
Siebert, Reiner;
Martin-Subero, Jose Ignacio

Publication type:

journal article

PB1709: A COMPLETE DIGITAL KARYOTYPE OF THE B-CELL LEUKEMIA REH CELL LINE RESOLVED BY LONG-READ SEQUENCING.

Published in:

2023

By:

Wiklander, Mariya Lysenkova;
Arvidsson, Gustav;
Bunikis, Ignas;
Lundmark, Anders;
Raine, Amanda;
Marincevic-Zuniga, Yanara;
Gezelius, Henrik;
Bremer, Anna;
Feuk, Lars;
Ameur, Adam;
Nordlund, Jessica

Publication type:

Abstract

Overexpression of chromatin remodeling and tyrosine kinase genes in iAMP21-positive acute lymphoblastic leukemia.

Published in:

Leukemia & Lymphoma, 2020, v. 61, n. 3, p. 604, doi. 10.1080/10428194.2019.1678153

By:

Ivanov Öfverholm, Ingegerd;
Zachariadis, Vasilios;
Taylan, Fulya;
Marincevic-Zuniga, Yanara;
Tran, Anh Nhi;
Saft, Leonie;
Nilsson, Daniel;
Syvänen, Ann-Christine;
Lönnerholm, Gudmar;
Harila-Saari, Arja;
Nordenskjöld, Magnus;
Heyman, Mats;
Nordgren, Ann;
Nordlund, Jessica;
Barbany, Gisela

Publication type:

Article

DNA Methylation Signatures Predict Cytogenetic Subtype and Outcome in Pediatric Acute Myeloid Leukemia (AML).

Published in:

Genes, 2021, v. 13, n. 6, p. 895, doi. 10.3390/genes12060895

By:

Krali, Olga;
Palle, Josefine;
Bäcklin, Christofer L.;
Abrahamsson, Jonas;
Norén-Nyström, Ulrika;
Hasle, Henrik;
Jahnukainen, Kirsi;
Jónsson, Ólafur Gísli;
Hovland, Randi;
Lausen, Birgitte;
Larsson, Rolf;
Palmqvist, Lars;
Staffas, Anna;
Zeller, Bernward;
Nordlund, Jessica

Publication type:

Article

De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data.

Published in:

Genes, 2018, v. 9, n. 10, p. 486, doi. 10.3390/genes9100486

By:

Ameur, Adam;
Che, Huiwen;
Martin, Marcel;
Bunikis, Ignas;
Dahlberg, Johan;
Höijer, Ida;
Häggqvist, Susana;
Vezzi, Francesco;
Nordlund, Jessica;
Olason, Pall;
Feuk, Lars;
Gyllensten, Ulf

Publication type:

Article

Multimodal Single-Cell Sequencing of B Cells in Primary Sjögren’s Syndrome.

Published in:

Arthritis & Rheumatology, 2024, v. 76, n. 2, p. 255, doi. 10.1002/art.42683

By:

Arvidsson, Gustav;
Czarnewski, Paulo;
Johansson, Alina;
Raine, Amanda;
Imgenberg-Kreuz, Juliana;
Nordlund, Jessica;
Nordmark, Gunnel;
Syvänen, Ann-Christine

Publication type:

Article

DNA methylation holds prognostic information in relapsed precursor B-cell acute lymphoblastic leukemia.

Published in:

Clinical Epigenetics, 2018, v. 10, p. 1, doi. 10.1186/s13148-018-0466-3

By:

Borssén, Magnus;
Nordlund, Jessica;
Haider, Zahra;
Landfors, Mattias;
Larsson, Pär;
Kanerva, Jukka;
Schmiegelow, Kjeld;
Flaegstad, Trond;
Jónsson, Ólafur Gísli;
Frost, Britt-Marie;
Palle, Josefine;
Forestier, Erik;
Heyman, Mats;
Hultdin, Magnus;
Lönnerholm, Gudmar;
Degerman, Sofie

Publication type:

Article

Data quality of whole genome bisulfite sequencing on Illumina platforms.

Published in:

PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0195972

By:

Raine, Amanda;
Liljedahl, Ulrika;
Nordlund, Jessica

Publication type:

Article

CopyNumber450kCancer: baseline correction for accurate copy number calling from the 450k methylation array.

Published in:

Bioinformatics, 2016, v. 32, n. 7, p. 1080, doi. 10.1093/bioinformatics/btv652

By:

Marzouka, Nour-al-dain;
Nordlund, Jessica;
Bäcklin, Christofer L.;
Lönnerholm, Gudmar;
Syvänen, Ann-Christine;
Almlöf, Jonas Carlsson

Publication type:

Article

Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole-genome sequencing.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-59214-w

By:

Nordlund, Jessica;
Marincevic-Zuniga, Yanara;
Cavelier, Lucia;
Raine, Amanda;
Martin, Tom;
Lundmark, Anders;
Abrahamsson, Jonas;
Norén-Nyström, Ulrika;
Lönnerholm, Gudmar;
Syvänen, Ann-Christine

Publication type:

Article

Long-read whole-genome analysis of human single cells.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40898-3

By:

Hård, Joanna;
Mold, Jeff E.;
Eisfeldt, Jesper;
Tellgren-Roth, Christian;
Häggqvist, Susana;
Bunikis, Ignas;
Contreras-Lopez, Orlando;
Chin, Chen-Shan;
Nordlund, Jessica;
Rubin, Carl-Johan;
Feuk, Lars;
Michaëlsson, Jakob;
Ameur, Adam

Publication type:

Article

Next generation pan-cancer blood proteome profiling using proximity extension assay.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39765-y

By:

Álvez, María Bueno;
Edfors, Fredrik;
von Feilitzen, Kalle;
Zwahlen, Martin;
Mardinoglu, Adil;
Edqvist, Per-Henrik;
Sjöblom, Tobias;
Lundin, Emma;
Rameika, Natallia;
Enblad, Gunilla;
Lindman, Henrik;
Höglund, Martin;
Hesselager, Göran;
Stålberg, Karin;
Enblad, Malin;
Simonson, Oscar E.;
Häggman, Michael;
Axelsson, Tomas;
Åberg, Mikael;
Nordlund, Jessica

Publication type:

Article

Next generation pan-cancer blood proteome profiling using proximity extension assay.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39765-y

By:

Álvez, María Bueno;
Edfors, Fredrik;
von Feilitzen, Kalle;
Zwahlen, Martin;
Mardinoglu, Adil;
Edqvist, Per-Henrik;
Sjöblom, Tobias;
Lundin, Emma;
Rameika, Natallia;
Enblad, Gunilla;
Lindman, Henrik;
Höglund, Martin;
Hesselager, Göran;
Stålberg, Karin;
Enblad, Malin;
Simonson, Oscar E.;
Häggman, Michael;
Axelsson, Tomas;
Åberg, Mikael;
Nordlund, Jessica

Publication type:

Article

Author Correction: The SEQC2 epigenomics quality control (EpiQC) study.

Published in:

2021

By:

Foox, Jonathan;
Nordlund, Jessica;
Lalancette, Claudia;
Gong, Ting;
Lacey, Michelle;
Lent, Samantha;
Langhorst, Bradley W.;
Ponnaluri, V. K. Chaithanya;
Williams, Louise;
Padmanabhan, Karthik Ramaswamy;
Cavalcante, Raymond;
Lundmark, Anders;
Butler, Daniel;
Mozsary, Christopher;
Gurvitch, Justin;
Greally, John M.;
Suzuki, Masako;
Menor, Mark;
Nasu, Masaki;
Alonso, Alicia

Publication type:

Correction Notice

The SEQC2 epigenomics quality control (EpiQC) study.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02529-2

By:

Foox, Jonathan;
Nordlund, Jessica;
Lalancette, Claudia;
Gong, Ting;
Lacey, Michelle;
Lent, Samantha;
Langhorst, Bradley W.;
Ponnaluri, V. K. Chaithanya;
Williams, Louise;
Padmanabhan, Karthik Ramaswamy;
Cavalcante, Raymond;
Lundmark, Anders;
Butler, Daniel;
Mozsary, Christopher;
Gurvitch, Justin;
Greally, John M.;
Suzuki, Masako;
Menor, Mark;
Nasu, Masaki;
Alonso, Alicia

Publication type:

Article

Exploring a pico-well based scRNA-seq method (HIVE) for simplified processing of equine bronchoalveolar lavage cells.

Published in:

PLoS ONE, 2025, v. 20, n. 1, p. 1, doi. 10.1371/journal.pone.0317343

By:

Fegraeus, Kim;
Riihimäki, Miia;
Nordlund, Jessica;
Akula, Srinivas;
Wernersson, Sara;
Raine, Amanda

Publication type:

Article

Accurate detection of subclonal single nucleotide variants in whole genome amplified and pooled cancer samples using HaloPlex target enrichment.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-856

By:

Berglund, Eva C.;
Lindqvist, Carl Mårten;
Hayat, Shahina;
Övernäs, Elin;
Henriksson, Niklas;
Nordlund, Jessica;
Wahlberg, Per;
Forestier, Erik;
Lönnerholm, Gudmar;
Syvänen, Ann-Christine

Publication type:

Article

Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion.

Published in:

BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00808-1

By:

Almeida, Pedro;
Proux-Wera, Estelle;
Churcher, Allison;
Soler, Lucile;
Dainat, Jacques;
Pucholt, Pascal;
Nordlund, Jessica;
Martin, Tom;
Rönnberg-Wästljung, Ann-Christin;
Nystedt, Björn;
Berlin, Sofia;
Mank, Judith E.

Publication type:

Article

Single-cell transcriptomics delineates the immune cell landscape in equine lower airways and reveals upregulation of FKBP5 in horses with asthma.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-43368-4

By:

Riihimäki, Miia;
Fegraeus, Kim;
Nordlund, Jessica;
Waern, Ida;
Wernersson, Sara;
Akula, Srinivas;
Hellman, Lars;
Raine, Amanda

Publication type:

Article

Bioinformatic description of immunotherapy targets for pediatric T-cell leukemia and the impact of normal gene sets used for comparison.

Published in:

Frontiers in Oncology, 2014, v. 4, p. 1, doi. 10.3389/fonc.2014.00134

By:

Orentas, Rimas J.;
Nordlund, Jessica;
He, Jianbin;
Sindiri, Sivasish;
Mackall, Crystal;
Fry, Terry J.;
Khan, Javed

Publication type:

Article

SPlinted Ligation Adapter Tagging (SPLAT), a novel library preparation method for whole genome bisulphite sequencing.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1110

By:

Raine, Amanda;
Manlig, Erika;
Wahlberg, Per;
Syvänen, Ann-Christine;
Nordlund, Jessica

Publication type:

Article

Next Generation Plasma Proteomics Identifies High-Precision Biomarker Candidates for Ovarian Cancer.

Published in:

Cancers, 2022, v. 14, n. 7, p. 1757, doi. 10.3390/cancers14071757

By:

Gyllensten, Ulf;
Hedlund-Lindberg, Julia;
Svensson, Johanna;
Manninen, Johanna;
Öst, Torbjörn;
Ramsell, Jon;
Åslin, Matilda;
Ivansson, Emma;
Lomnytska, Marta;
Lycke, Maria;
Axelsson, Tomas;
Liljedahl, Ulrika;
Nordlund, Jessica;
Edqvist, Per-Henrik;
Sjöblom, Tobias;
Uhlén, Mathias;
Stålberg, Karin;
Sundfeldt, Karin;
Åberg, Mikael;
Enroth, Stefan

Publication type:

Article

Refining risk prediction in pediatric acute lymphoblastic leukemia through DNA methylation profiling.

Published in:

Clinical Epigenetics, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13148-024-01662-6

By:

Mosquera Orgueira, Adrián;
Krali, Olga;
Pérez Míguez, Carlos;
Peleteiro Raíndo, Andrés;
Díaz Arias, José Ángel;
González Pérez, Marta Sonia;
Pérez Encinas, Manuel Mateo;
Fernández Sanmartín, Manuel;
Sinnet, Daniel;
Heyman, Mats;
Lönnerholm, Gudmar;
Norén-Nyström, Ulrika;
Schmiegelow, Kjeld;
Nordlund, Jessica

Publication type:

Article

Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia.

Published in:

Genome Biology, 2013, v. 14, n. 9, p. 105, doi. 10.1186/gb-2013-14-9-r105

By:

Nordlund, Jessica;
Bäcklin, Christofer L;
Wahlberg, Per;
Busche, Stephan;
Berglund, Eva C;
Eloranta, Maija-Leena;
Flaegstad, Trond;
Forestier, Erik;
Frost, Britt-Marie;
Harila-Saari, Arja;
Heyman, Mats;
Jónsson, Ólafur G;
Larsson, Rolf;
Palle, Josefine;
Rönnblom, Lars;
Schmiegelow, Kjeld;
Sinnett, Daniel;
Söderhäll, Stefan;
Pastinen, Tomi;
Gustafsson, Mats G

Publication type:

Article

CD99 expression is strongly associated with clinical outcome in children with B‐cell precursor acute lymphoblastic leukaemia.

Published in:

British Journal of Haematology, 2019, v. 184, n. 3, p. 418, doi. 10.1111/bjh.15683

By:

Chen, Dongfeng;
Camponeschi, Alessandro;
Wu, Qingqing;
Gerasimcik, Natalija;
Li, Huiqi;
Shen, Xue;
Tan, Yujie;
Sjögren, Helene;
Nordlund, Jessica;
Lönnerholm, Gudmar;
Abrahamsson, Jonas;
Fogelstrand, Linda;
Mårtensson, Inga‐Lill

Publication type:

Article

The clinical impact of IKZF1 deletions in paediatric B-cell precursor acute lymphoblastic leukaemia is independent of minimal residual disease stratification in Nordic Society for Paediatric Haematology and Oncology treatment protocols used between 1992 and 2013

Published in:

British Journal of Haematology, 2015, v. 170, n. 6, p. 847, doi. 10.1111/bjh.13514

By:

Olsson, Linda;
Ivanov Öfverholm, Ingegerd;
Norén‐Nyström, Ulrika;
Zachariadis, Vasilios;
Nordlund, Jessica;
Sjögren, Helene;
Golovleva, Irina;
Nordgren, Ann;
Paulsson, Kajsa;
Heyman, Mats;
Barbany, Gisela;
Johansson, Bertil

Publication type:

Article

Increased MYB alternative promoter usage is associated with relapse in acute lymphoblastic leukemia.

Published in:

Genes, Chromosomes & Cancer, 2023, v. 62, n. 10, p. 597, doi. 10.1002/gcc.23151

By:

Fehr, André;
Arvidsson, Gustav;
Nordlund, Jessica;
Lönnerholm, Gudmar;
Stenman, Göran;
Andersson, Mattias K.

Publication type:

Article

Transcriptome sequencing of archived lymphoma specimens is feasible and clinically relevant using exome capture technology.

Published in:

Genes, Chromosomes & Cancer, 2022, v. 61, n. 1, p. 27, doi. 10.1002/gcc.23002

By:

Skaftason, Aron;
Qu, Ying;
Abdulla, Maysaa;
Nordlund, Jessica;
Berglund, Mattias;
Ednersson, Susanne Bram;
Andersson, Per‐Ola;
Enblad, Gunilla;
Amini, Rose‐Marie;
Rosenquist, Richard;
Mansouri, Larry

Publication type:

Article

Comparison of high-throughput single-cell RNA-seq methods for ex vivo drug screening.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 1, p. 1, doi. 10.1093/nargab/lqae001

By:

Gezelius, Henrik;
Enblad, Anna Pia;
Lundmark, Anders;
Åberg, Martin;
Blom, Kristin;
Rudfeldt, Jakob;
Raine, Amanda;
Harila, Arja;
Rendo, Verónica;
Heinäniemi, Merja;
Andersson, Claes;
Nordlund, Jessica

Publication type:

Article

DNA Methylation Analysis of Bone Marrow Cells at Diagnosis of Acute Lymphoblastic Leukemia and at Remission.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0034513

By:

Nordlund, Jessica;
Milani, Lili;
Lundmark, Anders;
Lönnerholm, Gudmar;
Syvänen, Ann-Christine

Publication type:

Article

Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions.

Published in:

Molecular Neurobiology, 2019, v. 56, n. 10, p. 7113, doi. 10.1007/s12035-019-1585-3

By:

Sobol, Maria;
Klar, Joakim;
Laan, Loora;
Shahsavani, Mansoureh;
Schuster, Jens;
Annerén, Göran;
Konzer, Anne;
Mi, Jia;
Bergquist, Jonas;
Nordlund, Jessica;
Hoeber, Jan;
Huss, Mikael;
Falk, Anna;
Dahl, Niklas

Publication type:

Article

scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-09798-2

By:

Raine, Amanda;
Lundmark, Anders;
Annett, Alva;
Wiman, Ann-Christin;
Cavalli, Marco;
Wadelius, Claes;
Bergin, Claudia;
Nordlund, Jessica

Publication type:

Article

Mutational patterns and clonal evolution from diagnosis to relapse in pediatric acute lymphoblastic leukemia.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-95109-0

By:

Sayyab, Shumaila;
Lundmark, Anders;
Larsson, Malin;
Ringnér, Markus;
Nystedt, Sara;
Marincevic-Zuniga, Yanara;
Tamm, Katja Pokrovskaja;
Abrahamsson, Jonas;
Fogelstrand, Linda;
Heyman, Mats;
Norén-Nyström, Ulrika;
Lönnerholm, Gudmar;
Harila-Saari, Arja;
Berglund, Eva C.;
Nordlund, Jessica;
Syvänen, Ann-Christine

Publication type:

Article

Leukocytes with chromosome Y loss have reduced abundance of the cell surface immunoprotein CD99.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-94588-5

By:

Mattisson, Jonas;
Danielsson, Marcus;
Hammond, Maria;
Davies, Hanna;
Gallant, Caroline J.;
Nordlund, Jessica;
Raine, Amanda;
Edén, Malin;
Kilander, Lena;
Ingelsson, Martin;
Dumanski, Jan P.;
Halvardson, Jonatan;
Forsberg, Lars A.

Publication type:

Article

Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles.

Published in:

Journal of Hematology & Oncology, 2017, v. 10, p. 1, doi. 10.1186/s13045-017-0515-y

By:

Marincevic-Zuniga, Yanara;
Dahlberg, Johan;
Nilsson, Sara;
Raine, Amanda;
Nystedt, Sara;
Lindqvist, Carl Mårten;
Berglund, Eva C.;
Abrahamsson, Jonas;
Cavelier, Lucia;
Forestier, Erik;
Heyman, Mats;
Lönnerholm, Gudmar;
Nordlund, Jessica;
Syvänen, Ann-Christine

Publication type:

Article

The Mutational Landscape in Pediatric Acute Lymphoblastic Leukemia Deciphered by Whole Genome Sequencing.

Published in:

Human Mutation, 2015, v. 36, n. 1, p. 118, doi. 10.1002/humu.22719

By:

Lindqvist, Carl Mårten;
Nordlund, Jessica;
Ekman, Diana;
Johansson, Anna;
Moghadam, Behrooz Torabi;
Raine, Amanda;
Övernäs, Elin;
Dahlberg, Johan;
Wahlberg, Per;
Henriksson, Niklas;
Abrahamsson, Jonas;
Frost, Britt‐Marie;
Grandér, Dan;
Heyman, Mats;
Larsson, Rolf;
Palle, Josefine;
Söderhäll, Stefan;
Forestier, Erik;
Lönnerholm, Gudmar;
Syvänen, Ann‐Christine

Publication type:

Article

Feasibility to use whole-genome sequencing as a sole diagnostic method to detect genomic aberrations in pediatric B-cell acute lymphoblastic leukemia.

Published in:

Frontiers in Oncology, 2023, p. 01, doi. 10.3389/fonc.2023.1217712

By:

Rezayee, Fatemah;
Eisfeldt, Jesper;
Skaftason, Aron;
Öfverholm, Ingegerd;
Sayyab, Shumaila;
Syvänen, Ann Christine;
Maqbool, Khurram;
Lilljebjörn, Henrik;
Johansson, Bertil;
Olsson-Arvidsson, Linda;
Pietras, Christina Orsmark;
Staffas, Anna;
Palmqvist, Lars;
Fioretos, Thoas;
Cavelier, Lucia;
Fogelstrand, Linda;
Nordlund, Jessica;
Wirta, Valtteri;
Rosenquist, Richard

Publication type:

Article

Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03109-2

By:

Ren, Luyao;
Duan, Xiaoke;
Dong, Lianhua;
Zhang, Rui;
Yang, Jingcheng;
Gao, Yuechen;
Peng, Rongxue;
Hou, Wanwan;
Liu, Yaqing;
Li, Jingjing;
Yu, Ying;
Zhang, Naixin;
Shang, Jun;
Liang, Fan;
Wang, Depeng;
Chen, Hui;
Sun, Lele;
Hao, Lingtong;
Scherer, Andreas;
Nordlund, Jessica

Publication type:

Article