Works by Nolde, Dmitry E.

Results: 12

Structure and dynamics of the interaction of Delta and Omicron BA.1 SARS-CoV-2 variants with REGN10987 Fab reveal mechanism of antibody action.
Published in:
Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07422-9
By:
- Lyukmanova, Ekaterina N.;
- Pichkur, Evgeny B.;
- Nolde, Dmitry E.;
- Kocharovskaya, Milita V.;
- Manuvera, Valentin A.;
- Shirokov, Dmitriy A.;
- Kharlampieva, Daria D.;
- Grafskaia, Ekaterina N.;
- Svetlova, Julia I.;
- Lazarev, Vassili N.;
- Varizhuk, Anna M.;
- Kirpichnikov, Mikhail P.;
- Shenkarev, Zakhar O.
Publication type:
Article
Monte Carlo simulations of voltage-driven translocation of a signal sequence
Published in:
FEBS Letters, 2002, v. 526, n. 1-3, p. 97, doi. 10.1016/S0014-5793(02)03145-9
By:
- Efremov, Roman G.;
- Volynsky, Pavel E.;
- Nolde, Dmitry E.;
- van Dalen, Annemieke;
- de Kruijff, Ben;
- Arseniev, Alexander S.
Publication type:
Article
Membrane-mediated interaction of non-conventional snake three-finger toxins with nicotinic acetylcholine receptors.
Published in:
Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-04308-6
By:
- Shenkarev, Zakhar O.;
- Chesnokov, Yuri M.;
- Zaigraev, Maxim M.;
- Chugunov, Anton O.;
- Kulbatskii, Dmitrii S.;
- Kocharovskaya, Milita V.;
- Paramonov, Alexander S.;
- Bychkov, Maxim L.;
- Shulepko, Mikhail A.;
- Nolde, Dmitry E.;
- Kamyshinsky, Roman A.;
- Yablokov, Evgeniy O.;
- Ivanov, Alexey S.;
- Kirpichnikov, Mikhail P.;
- Lyukmanova, Ekaterina N.
Publication type:
Article
Characterization of the Corynebacterium glutamicum dehydroshikimate dehydratase QsuB and its potential for microbial production of protocatechuic acid.
Published in:
PLoS ONE, 2020, v. 15, n. 8, p. 1, doi. 10.1371/journal.pone.0231560
By:
- Shmonova, Ekaterina A.;
- Voloshina, Olga V.;
- Ovsienko, Maksim V.;
- Smirnov, Sergey V.;
- Nolde, Dmitry E.;
- Doroshenko, Vera G.
Publication type:
Article
Structure-based rational design of an enhanced fluorogen-activating protein for fluorogens based on GFP chromophore.
Published in:
Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03662-9
By:
- Goncharuk, Marina V.;
- Baleeva, Nadezhda S.;
- Nolde, Dmitry E.;
- Gavrikov, Alexey S.;
- Mishin, Alexey V.;
- Mishin, Alexander S.;
- Sosorev, Andrey Y.;
- Arseniev, Alexander S.;
- Goncharuk, Sergey A.;
- Borshchevskiy, Valentin I.;
- Efremov, Roman G.;
- Mineev, Konstantin S.;
- Baranov, Mikhail S.
Publication type:
Article
Temperature-sensitive gating of TRPV1 channel as probed by atomistic simulations of its trans- and juxtamembrane domains.
Published in:
Scientific Reports, 2016, p. 33112, doi. 10.1038/srep33112
By:
- Chugunov, Anton O.;
- Volynsky, Pavel E.;
- Krylov, Nikolay A.;
- Nolde, Dmitry E.;
- Efremov, Roman G.
Publication type:
Article
A Uniquely Stable Trimeric Model of SARS-CoV-2 Spike Transmembrane Domain.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 16, p. 9221, doi. 10.3390/ijms23169221
By:
- Aliper, Elena T.;
- Krylov, Nikolay A.;
- Nolde, Dmitry E.;
- Polyansky, Anton A.;
- Efremov, Roman G.
Publication type:
Article
Specific refolding pathway of viscumin A chain in membrane-like medium reveals a possible mechanism of toxin entry into cell.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-36310-6
By:
- Volynsky, Pavel E.;
- Nolde, Dmitry E.;
- Zakharova, Galina S.;
- Palmer, Rex A.;
- Tonevitsky, Alexander G.;
- Efremov, Roman G.
Publication type:
Article
Specificity of helix packing in transmembrane dimer of the cell death factor BNIP3: A molecular modeling study.
Published in:
Proteins, 2007, v. 69, n. 2, p. 309, doi. 10.1002/prot.21555
By:
- Vereshaga, Yana A.;
- Volynsky, Pavel E.;
- Pustovalova, Julia E.;
- Nolde, Dmitry E.;
- Arseniev, Alexander S.;
- Efremov, Roman G.
Publication type:
Article
PREDDIMER: a web server for prediction of transmembrane helical dimers.
Published in:
Bioinformatics, 2014, v. 30, n. 6, p. 889, doi. 10.1093/bioinformatics/btt645
By:
- Polyansky, Anton A.;
- Chugunov, Anton O.;
- Volynsky, Pavel E.;
- Krylov, Nikolay A.;
- Nolde, Dmitry E.;
- Efremov, Roman G.
Publication type:
Article
PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes.
Published in:
Bioinformatics, 2009, v. 25, n. 9, p. 1201, doi. 10.1093/bioinformatics/btp111
By:
- Timothy V. Pyrkov;
- Anton O. Chugunov;
- Nikolay A. Krylov;
- Dmitry E. Nolde;
- Roman G. Efremov
Publication type:
Article
Association of transmembrane helices: what determines assembling of a dimer?
Published in:
Journal of Computer-Aided Molecular Design, 2006, v. 20, n. 1, p. 27, doi. 10.1007/s10822-006-9034-6
By:
- Efremov, Roman G.;
- Vereshaga, Yana A.;
- Volynsky, Pavel E.;
- Nolde, Dmitry E.;
- Arseniev, Alexander S.
Publication type:
Article