Found: 79
Select item for more details and to access through your institution.
Target‐decoy false discovery rate estimation using Crema.
- Published in:
- Proteomics, 2024, v. 24, n. 8, p. 1, doi. 10.1002/pmic.202300084
- By:
- Publication type:
- Article
Author Correction: Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome.
- Published in:
- 2021
- By:
- Publication type:
- Correction Notice
Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011286
- By:
- Publication type:
- Article
Matrix prior for data transfer between single cell data types in latent Dirichlet allocation.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 5, p. 1, doi. 10.1371/journal.pcbi.1011049
- By:
- Publication type:
- Article
Ten simple rules for defining a computational biology project.
- Published in:
- 2023
- By:
- Publication type:
- Editorial
Machine learning applications in genetics and genomics.
- Published in:
- Nature Reviews Genetics, 2015, v. 16, n. 6, p. 321, doi. 10.1038/nrg3920
- By:
- Publication type:
- Article
Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum.
- Published in:
- BioEssays, 2015, v. 37, n. 2, p. 182, doi. 10.1002/bies.201400145
- By:
- Publication type:
- Article
MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data.
- Published in:
- Proteomes, 2018, v. 6, n. 1, p. 2, doi. 10.3390/proteomes6010002
- By:
- Publication type:
- Article
Software tools for visualizing Hi-C data.
- Published in:
- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1161-y
- By:
- Publication type:
- Article
Choosing panels of genomics assays using submodular optimization.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1089-7
- By:
- Publication type:
- Article
Computational and Statistical Analysis of Protein Mass Spectrometry Data.
- Published in:
- PLoS Computational Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002296
- By:
- Publication type:
- Article
Detecting Remote Evolutionary Relationships among Proteins by Large-Scale Semantic Embedding.
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1371/journal.pcbi.1001047
- By:
- Publication type:
- Article
High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000916
- By:
- Publication type:
- Article
Learning a Weighted Sequence Model of the Nucleosome Core and Linker Yields More Accurate Predictions in Saccharomyces cerevisiae and Homo sapiens.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000834
- By:
- Publication type:
- Article
A Quick Guide to Organizing Computational Biology Projects.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000424
- By:
- Publication type:
- Article
Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000213
- By:
- Publication type:
- Article
Predicting Human Nucleosome Occupancy from Primary Sequence.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000134
- By:
- Publication type:
- Article
Predicting Co-Complexed Protein Pairs from Heterogeneous Data.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000054
- By:
- Publication type:
- Article
DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.
- Published in:
- Bioinformatics, 2017, v. 33, n. 19, p. 3003, doi. 10.1093/bioinformatics/btx336
- By:
- Publication type:
- Article
Empirical comparison of web-based antimicrobial peptide prediction tools.
- Published in:
- Bioinformatics, 2017, v. 33, n. 13, p. 1921, doi. 10.1093/bioinformatics/btx081
- By:
- Publication type:
- Article
MCAST: scanning for cis-regulatory motif clusters.
- Published in:
- Bioinformatics, 2016, v. 32, n. 8, p. 1217, doi. 10.1093/bioinformatics/btv750
- By:
- Publication type:
- Article
A pitfall for machine learning methods aiming to predict across cell types.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02177-y
- By:
- Publication type:
- Article
Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-01978-5
- By:
- Publication type:
- Article
Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-01977-6
- By:
- Publication type:
- Article
A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1784-2
- By:
- Publication type:
- Article
Competition‐based control of the false discovery proportion.
- Published in:
- Biometrics, 2023, v. 79, n. 4, p. 3472, doi. 10.1111/biom.13830
- By:
- Publication type:
- Article
Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007329
- By:
- Publication type:
- Article
A statistical approach for inferring the 3D structure of the genome.
- Published in:
- Bioinformatics, 2014, v. 30, n. 12, p. i26, doi. 10.1093/bioinformatics/btu268
- By:
- Publication type:
- Article
Epigenetic priors for identifying active transcription factor binding sites.
- Published in:
- Bioinformatics, 2012, v. 28, n. 1, p. 56, doi. 10.1093/bioinformatics/btr614
- By:
- Publication type:
- Article
Improved similarity scores for comparing motifs.
- Published in:
- Bioinformatics, 2011, v. 27, n. 12, p. 1603, doi. 10.1093/bioinformatics/btr257
- By:
- Publication type:
- Article
FIMO: scanning for occurrences of a given motif.
- Published in:
- Bioinformatics, 2011, v. 27, n. 7, p. 1017, doi. 10.1093/bioinformatics/btr064
- By:
- Publication type:
- Article
The Genomedata format for storing large-scale functional genomics data.
- Published in:
- Bioinformatics, 2010, v. 26, n. 11, p. 1458, doi. 10.1093/bioinformatics/btq164
- By:
- Publication type:
- Article
Assessing phylogenetic motif models for predicting transcription factor binding sites.
- Published in:
- Bioinformatics, 2009, v. 25, n. 12, p. i339, doi. 10.1093/bioinformatics/btp201
- By:
- Publication type:
- Article
qvality: non-parametric estimation of q-values and posterior error probabilities.
- Published in:
- Bioinformatics, 2009, v. 25, n. 7, p. 964, doi. 10.1093/bioinformatics/btp021
- By:
- Publication type:
- Article
Rankprop: a web server for protein remote homology detection.
- Published in:
- Bioinformatics, 2009, v. 25, n. 1, p. 121, doi. 10.1093/bioinformatics/btn567
- By:
- Publication type:
- Article
Automated mapping of large-scale chromatin structure in ENCODE.
- Published in:
- Bioinformatics, 2008, v. 24, n. 17, p. 1911, doi. 10.1093/bioinformatics/btn335
- By:
- Publication type:
- Article
Improved network-based identification of protein orthologs.
- Published in:
- Bioinformatics, 2008, v. 24, n. 16, p. i200, doi. 10.1093/bioinformatics/btn277
- By:
- Publication type:
- Article
Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry.
- Published in:
- Bioinformatics, 2008, v. 24, n. 16, p. i42, doi. 10.1093/bioinformatics/btn294
- By:
- Publication type:
- Article
Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.
- Published in:
- Bioinformatics, 2008, v. 24, n. 13, p. i348, doi. 10.1093/bioinformatics/btn189
- By:
- Publication type:
- Article
A structural alignment kernel for protein structures.
- Published in:
- Bioinformatics, 2007, v. 23, n. 9, p. 1090, doi. 10.1093/bioinformatics/btl642
- By:
- Publication type:
- Article
Support vector machine learning from heterogeneous data: an empirical analysis using protein sequence and structure.
- Published in:
- Bioinformatics, 2006, v. 22, n. 22, p. 2753, doi. 10.1093/bioinformatics/btl475
- By:
- Publication type:
- Article
Motif-based protein ranking by network propagation.
- Published in:
- Bioinformatics, 2005, v. 21, n. 19, p. 3711, doi. 10.1093/bioinformatics/bti608
- By:
- Publication type:
- Article
Semi-supervised protein classification using cluster kernels.
- Published in:
- Bioinformatics, 2005, v. 21, n. 15, p. 3241, doi. 10.1093/bioinformatics/bti497
- By:
- Publication type:
- Article
Kernel methods for predicting protein–protein interactions.
- Published in:
- Bioinformatics, 2005, v. 21, p. i38, doi. 10.1093/bioinformatics/bti1016
- By:
- Publication type:
- Article
Predicting the in vivo signature of human gene regulatory sequences.
- Published in:
- Bioinformatics, 2005, v. 21, p. i338, doi. 10.1093/bioinformatics/bti1047
- By:
- Publication type:
- Article
Predicting the in vivo signature of human gene regulatory sequences.
- Published in:
- Bioinformatics, 2005, v. 21, n. 1, p. i338
- By:
- Publication type:
- Article
Kernel methods for predicting protein–protein interactions.
- Published in:
- Bioinformatics, 2005, v. 21, n. 1, p. i38, doi. 10.1093/bioinformatics/bti1016
- By:
- Publication type:
- Article
A statistical framework for genomic data fusion.
- Published in:
- Bioinformatics, 2004, v. 20, n. 16, p. 2626, doi. 10.1093/bioinformatics/bth294
- By:
- Publication type:
- Article
Learning kernels from biological networks by maximizing entropy.
- Published in:
- Bioinformatics, 2004, v. 20, n. suppl_1, p. i326, doi. 10.1093/bioinformatics/bth906
- By:
- Publication type:
- Article
Mismatch string kernels for discriminative protein classification.
- Published in:
- Bioinformatics, 2004, v. 20, n. 4, p. 467, doi. 10.1093/bioinformatics/btg431
- By:
- Publication type:
- Article