Works by Nishimura, Osamu

Results: 101

Restoring Lakeshore Vegetation in the Face of Hysteresis: A Water-Level and Sediment-Based Strategy for Shallow Lakes.

Published in:

Water (20734441), 2025, v. 17, n. 12, p. 1760, doi. 10.3390/w17121760

By:

Fujimoto, Yasufumi;
Takahashi, Yusuke;
Hayami, Hiroki;
Nomura, Munehiro;
Yokoyama, Jun;
Shimada, Tetsuo;
Nishimura, Osamu

Publication type:

Article

gVolante for standardizing completeness assessment of genome and transcriptome assemblies.

Published in:

Bioinformatics, 2017, v. 33, n. 22, p. 3635, doi. 10.1093/bioinformatics/btx445

By:

Osamu Nishimura;
Yuichiro Hara;
Shigehiro Kuraku

Publication type:

Article

A NOTE ON THE GOLDEN-RULE CONDITION IN THE OVERLAPPING GENERATIONS GROWTH MODEL.

Published in:

Manchester School (1463-6786), 1986, v. 54, n. 4, p. 420, doi. 10.1111/j.1467-9957.1986.tb01283.x

By:

NISHIMURA, OSAMU;
NAKAO, TAKEO

Publication type:

Article

Elimination of estrogens and estrogenic activity from sewage treatment works effluents in subsurface and surface flow constructed wetlands.

Published in:

International Journal of Environmental Analytical Chemistry, 2011, v. 91, n. 7/8, p. 600, doi. 10.1080/03067319.2010.496046

By:

Song, Hai-Liang;
Yang, Xiao-Li;
Nakano, Kazunori;
Nomura, Munehiro;
Nishimura, Osamu;
Li, Xian-Ning

Publication type:

Article

Plasma membrane expression of ZNF185 is a prognostic factor in pancreatic ductal carcinoma.

Published in:

Oncology Letters, 2017, v. 14, n. 3, p. 3633, doi. 10.3892/ol.2017.6633

By:

Daisuke Furukawa;
Tsuyoshi Chijiwa;
Masahiro Matsuyama;
Masaya Mukai;
Ei-Ichi Matsuo;
Osamu Nishimura;
Kenji Kawai;
Hiroshi Suemizu;
Toshio Nakagohri;
Soji Ozawa;
Kazuaki Shimada;
Nobuyoshi Hiraoka;
Masato Nakamura

Publication type:

Article

How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants.

Published in:

Ecology & Evolution (20457758), 2013, v. 3, n. 9, p. 3112, doi. 10.1002/ece3.706

By:

Toju, Hirokazu;
Sato, Hirotoshi;
Yamamoto, Satoshi;
Kadowaki, Kohmei;
Tanabe, Akifumi S.;
Yazawa, Shigenobu;
Nishimura, Osamu;
Agata, Kiyokazu

Publication type:

Article

The Intrapopulation Genetic Diversity of RNA Virus May Influence the Sensitivity of Chlorine Disinfection.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.839513

By:

Kadoya, Syun-suke;
Urayama, Syun-ichi;
Nunoura, Takuro;
Hirai, Miho;
Takaki, Yoshihiro;
Kitajima, Masaaki;
Nakagomi, Toyoko;
Nakagomi, Osamu;
Okabe, Satoshi;
Nishimura, Osamu;
Sano, Daisuke

Publication type:

Article

Comparison of the Chromosome Structures between the Chicken and Three Anserid Species, the Domestic Duck (Anas platyrhynchos), Muscovy Duck (Cairina moschata), and Chinese Goose (Anser cygnoides), and the Delineation of their Karyotype Evolution by Comparative Chromosome Mapping

Published in:

Journal of Poultry Science, 2014, v. 51, n. 1, p. 1, doi. 10.2141/jpsa.0130090

By:

Islam, Fhamida B.;
Uno, Yoshinobu;
Nunome, Mitsuo;
Nishimura, Osamu;
Tarui, Hiroshi;
Agata, Kiyokazu;
Matsuda, Yoichi

Publication type:

Article

The specific isolation of C-terminal peptides of proteins through a transamination reaction and its advantage for introducing functional groups into the peptide.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2009, v. 23, n. 5, p. 611, doi. 10.1002/rcm.3920

By:

Sonomura, Kazuhiro;
Kuyama, Hiroki;
Matsuo, Ei-ichi;
Tsunasawa, Susumu;
Nishimura, Osamu

Publication type:

Article

Selective isolation of N-terminal peptides from proteins and their de novo sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry without regard to unblocking or blocking of N-terminal amino acids.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 20, p. 3313, doi. 10.1002/rcm.3735

By:

Yamaguchi, Minoru;
Nakayama, Daisuke;
Shima, Keisuke;
Kuyama, Hiroki;
Ando, Eiji;
Okamura, Taka-aki;
Ueyama, Norikazu;
Nakazawa, Takashi;
Norioka, Shigemi;
Nishimura, Osamu;
Tsunasawa, Susumu

Publication type:

Article

An improved method for de novo sequencing of arginine-containing, N<sup>α</sup>-tris(2,4,6-trimethoxyphenyl)phosphonium-acetylated peptides.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 13, p. 2063, doi. 10.1002/rcm.3587

By:

Kuyama, Hiroki;
Sonomura, Kazuhiro;
Shima, Keisuke;
Nishimura, Osamu;
Tsunasawa, Susumu

Publication type:

Article

Sensitive detection of phosphopeptides by matrix-assisted laser desorption/ionization mass spectrometry: use of alkylphosphonic acids as matrix additives.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 8, p. 1109, doi. 10.1002/rcm.3482

By:

Kuyama, Hiroki;
Sonomura, Kazuhiro;
Nishimura, Osamu

Publication type:

Article

Specific isolation of N-terminal fragments from proteins and their high-fidelity de novo sequencing.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 20, p. 3329, doi. 10.1002/rcm.3215

By:

Yamaguchi, Minoru;
Obama, Takashi;
Kuyama, Hiroki;
Nakayama, Daisuke;
Ando, Eiji;
Okamura, Taka-aki;
Ueyama, Norikazu;
Nakazawa, Takashi;
Norioka, Shigemi;
Nishimura, Osamu;
Tsunasawa, Susumu

Publication type:

Article

Improved 2-nitrobenzenesulfenyl method: optimization of the protocol and improved enrichment for labeled peptides.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2006, v. 20, n. 1, p. 31, doi. 10.1002/rcm.2262

By:

Matsuo, Ei-ichi;
Toda, Chikako;
Watanabe, Makoto;
Iida, Tetsuo;
Masuda, Taro;
Minohata, Toshikazu;
Ando, Eiji;
Tsunasawa, Susumu;
Nishimura, Osamu

Publication type:

Article

An approach to quantitative proteome analysis by labeling tryptophan residues.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 14, p. 1642, doi. 10.1002/rcm.1100

By:

Kuyama, Hiroki;
Watanabe, Makoto;
Toda, Chikako;
Ando, Eiji;
Tanaka, Koichi;
Nishimura, Osamu

Publication type:

Article

An efficient chemical method for dephosphorylation of phosphopeptides.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 13, p. 1493, doi. 10.1002/rcm.1078

By:

Kuyama, Hiroki;
Toda, Chikako;
Watanabe, Makoto;
Tanaka, Koichi;
Nishimura, Osamu

Publication type:

Article

Influence of Milk on Aroma Release and Aroma Perception during Consumption of Coffee Beverages.

Published in:

Food Science & Technology Research, 2015, v. 21, n. 4, p. 607, doi. 10.3136/fstr.21.607

By:

Takafumi ITOBE;
Osamu NISHIMURA;
Kenji KUMAZAWA

Publication type:

Article

Antidepressant-Like Effects of 3-(3,4-dihydroxyphenyl)lactic Acid Isolated from Lavender (Lavandula angustifolia) Flowers in Mice.

Published in:

Food Science & Technology Research, 2014, v. 20, n. 6, p. 1213, doi. 10.3136/fstr.20.1213

By:

Toshio UENO;
Yoko MATSUI;
Hideki MASUDA;
Osamu NISHIMURA;
Makoto TOGAWA;
Katsuya SAKUMA;
Hidehiko YOKOGOSHI

Publication type:

Article

Availability of Detection Frequency Method Using Three-Port Gas Chromatography-Olfactometry for Rapid Comparison of Whole Milk Powders.

Published in:

Food Science & Technology Research, 2014, v. 20, n. 4, p. 809, doi. 10.3136/fstr.20.809

By:

Noriaki KOBAYASHI;
Osamu NISHIMURA

Publication type:

Article

Effects of Carvacrol and Volatile Fraction of Winter Savory (Satureja montana L.) on Body Temperature in Humans Who Experience Cold Sensitivity.

Published in:

Food Science & Technology Research, 2013, v. 19, n. 6, p. 1085, doi. 10.3136/fstr.19.1085

By:

Hideki MASUDA;
Noriyuki MORI;
Yoko MATSUI;
Keiko TSUKIYAMA;
Osamu NISHIMURA;
Shunsuke TAKEUCHI;
Yuko TERADA;
Tatsuo WATANABE;
Tomonori NADAMOTO

Publication type:

Article

A New Approach to Estimate the Elution Characteristics of Odorants in Chewing Gum during Chewing.

Published in:

Food Science & Technology Research, 2012, v. 18, n. 2, p. 295, doi. 10.3136/fstr.18.295

By:

ITOBE, Takafumi;
KUMAZAWA, Kenji;
INAGAKI, Satsuki;
NISHIMURA, Osamu

Publication type:

Article

Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC<sub>3</sub> profiling in snake.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 604, doi. 10.1186/1471-2164-13-604

By:

Kazumi Matsubara;
Shigehiro Kuraku;
Hiroshi Tarui;
Osamu Nishimura;
Chizuko Nishida;
Kiyokazu Agata;
Yoshinori Kumazawa;
Yoichi Matsuda

Publication type:

Article

Comparative transcriptome analysis between planarian Dugesia japonica and other platyhelminth species.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 289, doi. 10.1186/1471-2164-13-289

By:

Nishimura, Osamu;
Hirao, Yukako;
Tarui, Hiroshi;
Agata, Kiyokazu

Publication type:

Article

Developmental hourglass and heterochronic shifts in fin and limb development.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.62865

By:

Koh Onimaru;
Kaori Tatsumi;
Chiharu Tanegashima;
Mitsutaka Kadota;
Osamu Nishimura;
Shigehiro Kuraku

Publication type:

Article

Utilization of Food Sources Before and After the Tsunami in Nuttallia olivacea at Gamo Lagoon, Japan.

Published in:

Environmental Engineering Research, 2013, v. 18, n. 4, p. 259, doi. 10.4491/eer.2013.18.4.259

By:

Woo-Seok Shin;
Osamu Nishimura

Publication type:

Article

Predictive Water Virology: Hierarchical Bayesian Modeling for Estimating Virus Inactivation Curve.

Published in:

Water (20734441), 2019, v. 11, n. 10, p. 2187, doi. 10.3390/w11102187

By:

Kadoya, Syun-suke;
Nishimura, Osamu;
Kato, Hiroyuki;
Sano, Daisuke

Publication type:

Article

Sediments of Matsushima Bay, Northeastern Japan: Insights Gained From 5 Years of Sedimentological Analysis Following the 2011 Tohoku Earthquake‐Tsunami.

Published in:

Geochemistry, Geophysics, Geosystems: G3, 2019, v. 20, n. 8, p. 3913, doi. 10.1029/2019GC008381

By:

Ota, Yuki;
Suzuki, Atsushi;
Yamaoka, Kyoko;
Nagao, Masayuki;
Tanaka, Yuichiro;
Irizuki, Toshiaki;
Fujiwara, Osamu;
Yoshioka, Kaoru;
Kawagata, Shungo;
Kawano, Shigenori;
Nishimura, Osamu

Publication type:

Article

Inference of the Protokaryotypes of Amniotes and Tetrapods and the Evolutionary Processes of Microchromosomes from Comparative Gene Mapping.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0053027

By:

Uno, Yoshinobu;
Nishida, Chizuko;
Tarui, Hiroshi;
Ishishita, Satoshi;
Takagi, Chiyo;
Nishimura, Osamu;
Ishijima, Junko;
Ota, Hidetoshi;
Kosaka, Ayumi;
Matsubara, Kazumi;
Murakami, Yasunori;
Kuratani, Shigeru;
Ueno, Naoto;
Agata, Kiyokazu;
Matsuda, Yoichi

Publication type:

Article

Transcriptome Pyrosequencing of the Parasitoid Wasp Cotesia vestalis: Genes Involved in the Antennal Odorant-Sensory System.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050664

By:

Nishimura, Osamu;
Brillada, Carla;
Yazawa, Shigenobu;
Maffei, Massimo E.;
Arimura, Gen-ichiro

Publication type:

Article

Genome Features of "Dark-Fly", a Drosophila Line Reared Long-Term in a Dark Environment.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033288

By:

Minako Izutsu;
Jun Zhou;
Yuzo Sugiyama;
Osamu Nishimura;
Tomoyuki Aizu;
Atsushi Toyoda;
Asao Fujiyama;
Kiyokazu Agata;
Naoyuki Fuse

Publication type:

Article

To Be or Not to Be a Flatworm: The Acoel Controversy.

Published in:

PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005502

By:

Egger, Bernhard;
Steinke, Dirk;
Tarui, Hiroshi;
De Mulder, Katrien;
Arendt, Detlev;
Borgonie, Gaëtan;
Funayama, Noriko;
Gschwentner, Robert;
Hartenstein, Volker;
Hobmayer, Bert;
Hooge, Matthew;
Hrouda, Martina;
Ishida, Sachiko;
Kobayashi, Chiyoko;
Kuales, Georg;
Nishimura, Osamu;
Pfister, Daniela;
Rieger, Reinhard;
Salvenmoser, Willi;
Smith III, Julian

Publication type:

Article

Oocyte-type linker histone B4 is required for transdifferentiation of somatic cells in vivo.

Published in:

FASEB Journal, 2010, v. 24, n. 9, p. 3462, doi. 10.1096/fj.10-159285

By:

Maki, Nobuyasu;
Suetsugu-Maki, Rinako;
Sano, Shozo;
Nakamura, Kenta;
Nishimura, Osamu;
Tarui, Hiroshi;
Del Rio-Tsonis, Katia;
Ohsumi, Keita;
Agata, Kiyokazu;
Tsonis, Panagiotis A.

Publication type:

Article

Preparation of N-Acylated Proteins Modified with Fatty Acids Having a Specific Chain Length Using an Insect Cell-Free Protein Synthesis System.

Published in:

Bioscience, Biotechnology & Biochemistry, 2007, v. 71, n. 1, p. 261, doi. 10.1271/bbb.60470

By:

Suzuki, Takashi;
Ito, Masaaki;
Ezure, Toru;
Shikata, Masamitsu;
Ando, Eiji;
Utsumi, Toshihiko;
Tsunasawa, Susumu;
Nishimura, Osamu

Publication type:

Article

Tissue and Intracellular Localization of Indican and the Purification and Characterization of Indican Synthase from Indigo Plants.

Published in:

Plant & Cell Physiology, 2000, v. 41, n. 2, p. 218, doi. 10.1093/pcp/41.2.218

By:

Minami, Yoshiko;
Nishimura, Osamu;
Hara-Nishimura, Ikuko;
Nishimura, Mikio;
Matsubara, Hiroshi

Publication type:

Article

Assessment of nitrous oxide production in eutrophicated rivers with inflow of treated wastewater based on investigation and statistical analysis.

Published in:

Environmental Monitoring & Assessment, 2021, v. 193, n. 2, p. 1, doi. 10.1007/s10661-021-08855-z

By:

Mishima, Iori;
Masuda, Shuhei;
Kakimoto, Takashi;
Ikeda, Kazuhiro;
Watanabe, Keiji;
Maruo, Chikako;
Nishimura, Osamu

Publication type:

Article

Hydrodynamic-Driven Changes in the Source and Composition of Sedimentary Organic Matter via Grain Size Distribution in Shallow Lakes.

Published in:

Journal of Geophysical Research. Biogeosciences, 2021, v. 126, n. 11, p. 1, doi. 10.1029/2021JG006502

By:

Xiaoguang Xu;
Ruijie Shi;
Chengxu Lv;
Huazu Liu;
Wei Yang;
Shenhua Qian;
Megumu Fujibayashi;
Yue Zhi;
Guoxiang Wang;
Munehiro Nomura;
Osamu Nishimura;
Wei Li

Publication type:

Article

Technical considerations in Hi‐C scaffolding and evaluation of chromosome‐scale genome assemblies.

Published in:

Molecular Ecology, 2021, v. 30, n. 23, p. 5923, doi. 10.1111/mec.16146

By:

Yamaguchi, Kazuaki;
Kadota, Mitsutaka;
Nishimura, Osamu;
Ohishi, Yuta;
Naito, Yuki;
Kuraku, Shigehiro

Publication type:

Article

Temperature-dependent, behavioural, and transcriptional variability of a tritrophic interaction consisting of bean, herbivorous mite, and predator.

Published in:

Molecular Ecology, 2012, v. 21, n. 22, p. 5624, doi. 10.1111/mec.12052

By:

Ozawa, Rika;
Nishimura, Osamu;
Yazawa, Shigenobu;
Muroi, Atsushi;
Takabayashi, Junji;
Arimura, Gen-ichiro

Publication type:

Article

CHARACTERIZATION OF THE MOD 3 COHOMOLOGY OF THE COMPACT, CONNECTED, SIMPLE, EXCEPTIONAL LIE GROUPS OF RANK 6.

Published in:

Bulletin of the London Mathematical Society, 2003, v. 35, n. 5, p. 615, doi. 10.1112/S0024609303002121

By:

AKIRA KONO;
OSAMU NISHIMURA

Publication type:

Article

Development of Rapid PCR Methods for the Detection and Quantification of Geosmin-Producing Dolichospermum spp.

Published in:

Water, Air & Soil Pollution, 2022, v. 233, n. 9, p. 1, doi. 10.1007/s11270-022-05859-4

By:

Miao, Hanchen;
Zhang, Ji;
Shen, Qingyue;
Ichise, Satoshi;
Asada, Yasuhiro;
Tian, Yuan;
Utsumi, Motoo;
Lei, Zhongfang;
Zhang, Zhenya;
Takanashi, Hirokazu;
Fujimoto, Naoshi;
Nishimura, Osamu;
Akiba, Michihiro;
Shimizu, Kazuya

Publication type:

Article

The Azo Dye Degradation and Differences Between the Two Anodes on the Microbial Community in a Double-Anode Microbial Fuel Cell.

Published in:

Water, Air & Soil Pollution, 2019, v. 230, n. 11, p. N.PAG, doi. 10.1007/s11270-019-4325-4

By:

Long, Xizi;
Cao, Xian;
Liu, Shentan;
Nishimura, Osamu;
Li, Xianning

Publication type:

Article

Biosorption of Mercury by Reed (Phragmites australis) as a Potential Clean Water Technology.

Published in:

Water, Air & Soil Pollution, 2018, v. 229, n. 10, p. 1, doi. 10.1007/s11270-018-3978-8

By:

Soto-Ríos, Paula Cecilia;
León-Romero, Marco Antonio;
Sukhbaatar, Otongtuya;
Nishimura, Osamu

Publication type:

Article

Effect of Steel Slag to Improve Soil Quality of Tsunami-Impacted Land while Reducing the Risk of Heavy Metal Bioaccumulation.

Published in:

Water, Air & Soil Pollution, 2018, v. 229, n. 1, p. 0, doi. 10.1007/s11270-017-3666-0

By:

León-Romero, Marco Antonio;
Soto-Ríos, Paula Cecilia;
Nomura, Munehiro;
Nishimura, Osamu

Publication type:

Article

Impact of NaCl Solution Pretreatment on Plant Growth and the Uptake of Multi-heavy Metal by the Model Plant Arabidopsis thaliana.

Published in:

Water, Air & Soil Pollution, 2017, v. 228, n. 2, p. 1, doi. 10.1007/s11270-017-3241-8

By:

León-Romero, Marco;
Soto-Ríos, Paula;
Fujibayashi, Megumu;
Nishimura, Osamu

Publication type:

Article

Temperature affects growth, geosmin/2-methylisoborneol production, and gene expression in two cyanobacterial species.

Published in:

Environmental Science & Pollution Research, 2022, v. 29, n. 8, p. 12017, doi. 10.1007/s11356-021-16593-5

By:

Shen, Qingyue;
Wang, Qian;
Miao, Hanchen;
Shimada, Marie;
Utsumi, Motoo;
Lei, Zhongfang;
Zhang, Zhenya;
Nishimura, Osamu;
Asada, Yasuhiro;
Fujimoto, Naoshi;
Takanashi, Hirokazu;
Akiba, Michihiro;
Shimizu, Kazuya

Publication type:

Article

Key Aroma Compounds in Roasted In-shell Peanuts.

Published in:

Bioscience, Biotechnology & Biochemistry, 2013, v. 77, n. 7, p. 1467, doi. 10.1271/bbb.130112

By:

Shu KANEKO;
Ririka SAKAI;
Kenji KUMAZAWA;
Manabu USUKI;
Osamu NISHIMURA

Publication type:

Article

Isolation and Identification of the Umami Enhancing Compounds in Japanese Soy Sauce.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 7, p. 1275, doi. 10.1271/bbb.110041

By:

KANEKO, Shu;
KUMAZAWA, Kenji;
NISHIMURA, Osamu

Publication type:

Article

Identification and Formation of Volatile Components Responsible for the Characteristic Aroma of Mat Rush (Igusa).

Published in:

Bioscience, Biotechnology & Biochemistry, 2010, v. 74, n. 6, p. 1231, doi. 10.1271/bbb.100053

By:

Kumazawa, Kenji;
Sakai, Nao;
Amma, Hiroko;
Sakamoto, Satoshi;
Kodama, Masaki;
Wada, Yoshiyuki;
Nishimura, Osamu

Publication type:

Article

Protein prenylation in an insect cell-free protein synthesis system and identification of products by mass spectrometry.

Published in:

Proteomics, 2007, v. 7, n. 12, p. 1942, doi. 10.1002/pmic.200700237

By:

Suzuki, Takashi;
Ito, Masaaki;
Ezure, Toru;
Shikata, Masamitsu;
Ando, Eiji;
Utsumi, Toshihiko;
Tsunasawa, Susumu;
Nishimura, Osamu

Publication type:

Article

Evidence for phosphorylation of rat liver glucose-regulated protein 58, GRP58/ERp57/ER-60, induced by fasting and leptin

Published in:

FEBS Letters, 2006, v. 580, n. 1, p. 199, doi. 10.1016/j.febslet.2005.11.074

By:

Kita, Kanako;
Okumura, Nobuaki;
Takao, Toshifumi;
Watanabe, Makoto;
Matsubara, Toshiya;
Nishimura, Osamu;
Nagai, Katsuya

Publication type:

Article