Works matching AU Nishihara, Hidenori

Results: 31

Acquisition of Endonuclease Specificity during Evolution of L1 Retrotransposon.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 9, p. 2009, doi. 10.1093/molbev/msm130

By:

Ichiyanagi, Kenji;
Nishihara, Hidenori;
Duvernell, David D.;
Okada, Norihiro

Publication type:

Article

A Retroposon Analysis of Afrotherian Phylogeny.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 9, p. 1823, doi. 10.1093/molbev/msi179

By:

Nishihara, Hidenori;
Satta, Yoko;
Nikaido, Masato;
Thewissen, J. G. M.;
Stanhope, Michael J.;
Okada, Norihiro

Publication type:

Article

Ancient SINEs from African Endemic Mammals.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 4, p. 522, doi. 10.1093/molbev/msg052

By:

Nikaido, Masato;
Nishihara, Hidenori;
Hukumoto, Yukio;
Okada, Norihiro

Publication type:

Article

Characterization of Novel Alu- and tRNA-Related SINEs from the Tree Shrew and Evolutionary Implications of Their Origins.

Published in:

Molecular Biology & Evolution, 2002, v. 19, n. 11, p. 1964, doi. 10.1093/oxfordjournals.molbev.a004020

By:

Nishihara, Hidenori;
Terai, Yohey;
Okada, Norihiro

Publication type:

Article

Marsupial genome analysis suggests that satellite DNA formation from walb endogenous retrovirus is an event specific to the red‐necked wallaby.

Published in:

Genes to Cells, 2023, v. 28, n. 2, p. 149, doi. 10.1111/gtc.12999

By:

Koga, Akihiko;
Hashimoto, Kenji;
Honda, Yusuke;
Nishihara, Hidenori

Publication type:

Article

Replacement of owl monkey centromere satellite by a newly evolved variant was a recent and rapid process.

Published in:

Genes to Cells, 2021, v. 26, n. 12, p. 979, doi. 10.1111/gtc.12898

By:

Nishihara, Hidenori;
Stanyon, Roscoe;
Tanabe, Hideyuki;
Koga, Akihiko

Publication type:

Article

B Chromosomes Have a Functional Effect on Female Sex Determination in Lake Victoria Cichlid Fishes.

Published in:

PLoS Genetics, 2011, v. 7, n. 8, p. 1, doi. 10.1371/journal.pgen.1002203

By:

Yoshida, Kohta;
Terai, Yohey;
Mizoiri, Shinji;
Aibara, Mitsuto;
Nishihara, Hidenori;
Watanabe, Masakatsu;
Kuroiwa, Asato;
Hirai, Hirohisa;
Hirai, Yuriko;
Matsuda, Yoichi;
Okada, Norihiro

Publication type:

Article

Identification of four Engrailed genes in the Japanese lamprey, Lethenteron japonicum.

Published in:

Developmental Dynamics, 2008, v. 237, n. 6, p. 1581, doi. 10.1002/dvdy.21552

By:

Matsuura, Manami;
Nishihara, Hidenori;
Onimaru, Koh;
Kokubo, Nobuhiro;
Kuraku, Shigehiro;
Kusakabe, Rie;
Okada, Norihiro;
Kuratani, Shigeru;
Tanaka, Mikiko

Publication type:

Article

Phylogenetic analysis of proteins involved in the stringent response in plant cells.

Published in:

Journal of Plant Research, 2017, v. 130, n. 4, p. 625, doi. 10.1007/s10265-017-0922-8

By:

Ito, Doshun;
Ihara, Yuta;
Nishihara, Hidenori;
Masuda, Shinji

Publication type:

Article

SINEs as Credible Signs to Prove Common Ancestry in the Tree of Life: A Brief Review of Pioneering Case Studies in Retroposon Systematics.

Published in:

Genes, 2022, v. 13, n. 6, p. 989, doi. 10.3390/genes13060989

By:

Nikaido, Masato;
Nishihara, Hidenori;
Okada, Norihiro

Publication type:

Article

Functional Divergence in Solute Permeability between Ray-Finned Fish-Specific Paralogs of aqp10.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 1, p. 1, doi. 10.1093/gbe/evad221

By:

Imaizumi, Genki;
Ushio, Kazutaka;
Nishihara, Hidenori;
Braasch, Ingo;
Watanabe, Erika;
Kumagai, Shiori;
Furuta, Tadaomi;
Matsuzaki, Koji;
Romero, Michael F;
Kato, Akira;
Nagashima, Ayumi

Publication type:

Article

Evolutionary Origin of OwlRep, aMegasatellite DNA Associated with Adaptation of OwlMonkeys to Nocturnal Lifestyle.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 1, p. 157, doi. 10.1093/gbe/evx281

By:

Hidenori Nishihara;
Stanyon, Roscoe;
Junko Kusumi;
Hirohisa Hirai;
Akihiko Koga

Publication type:

Article

Support for Lungfish as the Closest Relative of Tetrapods by Using Slowly Evolving Ray-Finned Fish as the Outgroup.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 1, p. 93, doi. 10.1093/gbe/evw288

By:

Naoko Takezaki;
Hidenori Nishihara

Publication type:

Article

Resolving the Phylogenetic Position of Coelacanth: The Closest Relative Is Not Always the Most Appropriate Outgroup.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 4, p. 1208, doi. 10.1093/gbe/evw071

By:

Takezaki, Naoko;
Nishihara, Hidenori

Publication type:

Article

MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 3, p. 528, doi. 10.1093/gbe/evw029

By:

Hidenori Nishihara;
Plazzi, Federico;
Passamonti, Marco;
Norihiro Okada

Publication type:

Article

Determining the Position of Storks on the Phylogenetic Tree of Waterbirds by Retroposon Insertion Analysis.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 12, p. 3180, doi. 10.1093/gbe/evv213

By:

Tae Kuramoto;
Hidenori Nishihara;
Maiko Watanabe;
Norihiro Okada

Publication type:

Article

Evolutionary diversification of DYX1C1 transcripts via an HERV-H LTR integration event.

Published in:

Genes & Genetic Systems, 2011, v. 86, n. 4, p. 277, doi. 10.1266/ggs.86.277

By:

Yun-Ji Kim;
Jae-Won Huh;
Dae-Soo Kim;
Kyudong Han;
Hwan-Mook Kim;
Heui-Soo Kim;
Nishihara, Hidenori

Publication type:

Article

Overestimation of nonsynonymous/synonymous rate ratio by reverse-translation of aligned amino acid sequences.

Published in:

Genes & Genetic Systems, 2011, v. 86, n. 2, p. 123, doi. 10.1266/ggs.86.123

By:

Suzuki, Yoshiyuki;
Nishihara, Hidenori

Publication type:

Article

Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate.

Published in:

PLoS Genetics, 2016, v. 12, n. 10, p. 1, doi. 10.1371/journal.pgen.1006380

By:

Nishihara, Hidenori;
Kobayashi, Naoki;
Kimura-Yoshida, Chiharu;
Yan, Kuo;
Bormuth, Olga;
Ding, Qiong;
Nakanishi, Akiko;
Sasaki, Takeshi;
Hirakawa, Mika;
Sumiyama, Kenta;
Furuta, Yasuhide;
Tarabykin, Victor;
Matsuo, Isao;
Okada, Norihiro

Publication type:

Article

Placental Mammals Acquired Functional Sequences in NRK for Regulating the CK2–PTEN–AKT Pathway and Placental Cell Proliferation.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 2, p. 1, doi. 10.1093/molbev/msab371

By:

Lestari, Beni;
Naito, Satomi;
Endo, Akinori;
Nishihara, Hidenori;
Kato, Akira;
Watanabe, Erika;
Denda, Kimitoshi;
Komada, Masayuki;
Fukushima, Toshiaki

Publication type:

Article

Reverse Evolution in RH1 for Adaptation of Cichlids to Water Depth in Lake Tanganyika.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 6, p. 1769, doi. 10.1093/molbev/msq344

By:

Nagai, Haruka;
Terai, Yohey;
Sugawara, Tohru;
Imai, Hiroo;
Nishihara, Hidenori;
Hori, Michio;
Okada, Norihiro

Publication type:

Article

ISWI chromatin remodeling complexes recruit NSD2 and H3K36me2 in pericentromeric heterochromatin.

Published in:

Journal of Cell Biology, 2024, v. 223, n. 8, p. 1, doi. 10.1083/jcb.202310084

By:

Naoki Goto;
Kazuma Suke;
Nao Yonezawa;
Hidenori Nishihara;
Tetsuya Handa;
YukoSato;
Tomoya Kujirai;
Hitoshi Kurumizaka;
Kazuo Yamagata;
Hiroshi Kimura

Publication type:

Article

Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 5, p. 2700, doi. 10.1093/nar/gkab059

By:

Ishino, Kyoko;
Hasuwa, Hidetoshi;
Yoshimura, Jun;
Iwasaki, Yuka W;
Nishihara, Hidenori;
Seki, Naomi M;
Hirano, Takamasa;
Tsuchiya, Marie;
Ishizaki, Hinako;
Masuda, Harumi;
Kuramoto, Tae;
Saito, Kuniaki;
Sakakibara, Yasubumi;
Toyoda, Atsushi;
Itoh, Takehiko;
Siomi, Mikiko C;
Morishita, Shinichi;
Siomi, Haruhiko

Publication type:

Article

Retrotransposons spread potential cis-regulatory elements during mammary gland evolution.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11551, doi. 10.1093/nar/gkz1003

By:

Nishihara, Hidenori

Publication type:

Article

Phylogeny of Galactolipid Synthase Homologs Together with their Enzymatic Analyses Revealed a Possible Origin and Divergence Time for Photosynthetic Membrane Biogenesis.

Published in:

DNA Research, 2012, v. 19, n. 1, p. 91, doi. 10.1093/dnares/dsr044

By:

Yuzawa, Yuichi;
Nishihara, Hidenori;
Haraguchi, Tsuyoshi;
Masuda, Shinji;
Shimojima, Mie;
Shimoyama, Atsushi;
Yuasa, Hideya;
Okada, Norihiro;
Ohta, Hiroyuki

Publication type:

Article

Emergence of mammals by emergency: exaptation.

Published in:

Genes to Cells, 2010, v. 15, n. 8, p. 801, doi. 10.1111/j.1365-2443.2010.01429.x

By:

Okada, Norihiro;
Sasaki, Takeshi;
Shimogori, Tomomi;
Nishihara, Hidenori

Publication type:

Article

A SINE-Derived Element Constitutes a Unique Modular Enhancer for Mammalian Diencephalic Fgf8.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043785

By:

Nakanishi, Akiko;
Kobayashi, Naoki;
Suzuki-Hirano, Asuka;
Nishihara, Hidenori;
Sasaki, Takeshi;
Hirakawa, Mika;
Sumiyama, Kenta;
Shimogori, Tomomi;
Okada, Norihiro;
Batzer, Mark A.

Publication type:

Article

A Mammalian Conserved Element Derived from SINE Displays Enhancer Properties Recapitulating Satb2 Expression in Early-Born Callosal Projection Neurons.

Published in:

PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028497

By:

Tashiro, Kensuke;
Teissier, Anne;
Kobayashi, Naoki;
Nakanishi, Akiko;
Sasaki, Takeshi;
Yan, Kuo;
Tarabykin, Victor;
Vigier, Lisa;
Sumiyama, Kenta;
Hirakawa, Mika;
Nishihara, Hidenori;
Pierani, Alessandra;
Okada, Norihiro

Publication type:

Article

Evolution of transposable elements and evolution of eukaryote genomes mediated by transposable elements.

Published in:

Genes & Genetic Systems, 2019, v. 94, n. 6, p. 231, doi. 10.1266/ggs.94.231

By:

Hidenori Nishihara

Publication type:

Article

The CENP-B box, a nucleotide motif involved in centromere formation, has multiple origins in New World monkeys.

Published in:

Genes & Genetic Systems, 2019, v. 94, n. 6, p. 301, doi. 10.1266/ggs.19-00042

By:

Ratchaphol Thongchum;
Hidenori Nishihara;
Srikulnath, Kornsorn;
Hirohisa Hirai;
Akihiko Koga

Publication type:

Article

Transposable elements as genetic accelerators of evolution: contribution to genome size, gene regulatory network rewiring and morphological innovation.

Published in:

Genes & Genetic Systems, 2019, v. 94, n. 6, p. 269, doi. 10.1266/ggs.19-00029

By:

Hidenori Nishihara

Publication type:

Article