Works matching AU Nikolaev, Eugene

Results: 48

Retention Time Prediction with Message-Passing Neural Networks.

Published in:

Separations (2297-8739), 2022, v. 9, n. 10, p. N.PAG, doi. 10.3390/separations9100291

By:

Osipenko, Sergey;
Nikolaev, Eugene;
Kostyukevich, Yury

Publication type:

Article

Theory of peak coalescence in Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2009, v. 23, n. 19, p. 3213, doi. 10.1002/rcm.4231

By:

Boldin, Ivan A.;
Nikolaev, Eugene N.

Publication type:

Article

The N-domain of angiotensin-converting enzyme specifically hydrolyzes the Arg-5-His-6 bond of Alzheimer's Aβ-(1-16) peptide and its isoAsp-7 analogue with different efficiency as evidenced by quantitative matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

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Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 2, p. 231, doi. 10.1002/rcm.3357

By:

Toropygin, Ilya Yu.;
Kugaevskaya, Elena V.;
Mirgorodskaya, Olga A.;
Elisseeva, Yulia E.;
Kozmin, Yuri P.;
Popov, Igor A.;
Nikolaev, Eugene N.;
Makarov, Alexander A.;
Kozin, Sergey A.

Publication type:

Article

Realistic modeling of ion cloud motion in a Fourier transform ion cyclotron resonance cell by use of a particle-in-cell approach.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 22, p. 3527, doi. 10.1002/rcm.3234

By:

Nikolaev, Eugene N.;
Heeren, Ron M. A.;
Popov, Alexander M.;
Pozdneev, Alexander V.;
Chingin, Konstantin S.

Publication type:

Article

Initial implementation of external accumulation liquid chromatography/electrospray ionization Fourier transform ion cyclotron resonance with automated gain control.

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Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 7, p. 627, doi. 10.1002/rcm.955

By:

Belov, Mikhail E.;
Rakov, Vsevolod S.;
Nikolaev, Eugene N.;
Goshe, Michael B.;
Anderson, Gordon A.;
Smith, Richard D.

Publication type:

Article

Direct analysis of volatile organic compounds in human breath using a miniaturized cylindrical ion trap mass spectrometer with a membrane inlet.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2002, v. 16, n. 24, p. 2370, doi. 10.1002/rcm.841

By:

Riter, Leah S.;
Laughlin, Brian C.;
Nikolaev, Eugene;
Cooks, R. Graham

Publication type:

Article

Hydrogen/deuterium exchange in mass spectrometry.

Published in:

Mass Spectrometry Reviews, 2018, v. 37, n. 6, p. 811, doi. 10.1002/mas.21565

By:

Kostyukevich, Yury;
Acter, Thamina;
Zherebker, Alexander;
Ahmed, Arif;
Kim, Sunghwan;
Nikolaev, Eugene

Publication type:

Article

Fourier transform ion cyclotron resonance (FT ICR) mass spectrometry: Theory and simulations.

Published in:

Mass Spectrometry Reviews, 2016, v. 35, n. 2, p. 219, doi. 10.1002/mas.21422

By:

Nikolaev, Eugene N.;
Kostyukevich, Yury I.;
Vladimirov, Gleb N.

Publication type:

Article

Potassium Ions are More Effective than Sodium Ions in Salt Induced Peptide Formation.

Published in:

Origins of Life & Evolution of the Biosphere, 2013, v. 43, n. 2, p. 109, doi. 10.1007/s11084-013-9326-5

By:

Dubina, Michael;
Vyazmin, Sergey;
Boitsov, Vitali;
Nikolaev, Eugene;
Popov, Igor;
Kononikhin, Alexey;
Eliseev, Igor;
Natochin, Yuri

Publication type:

Article

The molecular mechanisms driving physiological changes after long duration space flights revealed by quantitative analysis of human blood proteins.

Published in:

BMC Medical Genomics, 2019, v. 12, n. 2, p. N.PAG, doi. 10.1186/s12920-019-0490-y

By:

Kashirina, Daria N.;
Percy, Andrew J.;
Pastushkova, Liudmila Kh.;
Borchers, Christoph H.;
Kireev, Kirill S.;
Ivanisenko, Vladimir A.;
Kononikhin, Alexey S.;
Nikolaev, Eugene N.;
Larina, Irina M.

Publication type:

Article

Ubiquitin-independent proteosomal degradation of myelin basic protein contributes to development of neurodegenerative autoimmunity.

Published in:

FASEB Journal, 2015, v. 29, n. 5, p. 1901, doi. 10.1096/fj.14-259333

By:

Belogurov Jr., Alexey;
Kuzina, Ekaterina;
Kudriaeva, Anna;
Kononikhin, Alexey;
Kovalchuk, Sergey;
Surina, Yelena;
Smirnov, Ivan;
Lomakin, Yakov;
Bacheva, Anna;
Stepanov, Alexey;
Karpova, Yaroslava;
Lyupina, Yulia;
Kharybin, Oleg;
Melamed, Dobroslav;
Ponomarenko, Natalia;
Sharova, Natalia;
Nikolaev, Eugene;
Gabibov, Alexander

Publication type:

Article

Simple Synthesis of Ruthenium π Complexes of Aromatic Amino Acids and Small Peptides.

Published in:

Chemistry - A European Journal, 2010, v. 16, n. 28, p. 8466, doi. 10.1002/chem.201000520

By:

Perekalin, Dmitry S.;
Karslyan, Eduard E.;
Petrovskii, Pavel V.;
Nelyubina, Yulia V.;
Lyssenko, Konstantin A.;
Kononikhin, Alexey S.;
Nikolaev, Eugene N.;
Kudinov, Alexander R.

Publication type:

Article

Matrix-assisted laser desorption/ionization matrix incorporation evaluation algorithm for improved peak coverage and signal-to-noise ratio in mass spectrometry imaging.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2024, v. 38, n. 15, p. 1, doi. 10.1002/rcm.9830

By:

Kuzin, Andrey A.;
Sobolev, Daniil I.;
Eliferov, Vasiliy A.;
Stupnikova, Galina S.;
Popov, Igor A.;
Nikolaev, Eugene N.;
Pekov, Stanislav I.

Publication type:

Article

Isomerization of the Asp7 Residue Results in Zinc-Induced Oligomerization of Alzheimer's Disease Amyloid β(1-16) Peptide.

Published in:

ChemBioChem, 2008, v. 9, n. 10, p. 1564, doi. 10.1002/cbic.200700784

By:

Tsvetkov, Philipp O.;
Popov, Igor A.;
Nikolaev, Eugene N.;
Archakov, Alexander I.;
Makarov, Alexander A.;
Kozin, Sergey A.

Publication type:

Article

Shapley Value as a Quality Control for Mass Spectra of Human Glioblastoma Tissues.

Published in:

Data (2306-5729), 2023, v. 8, n. 1, p. 21, doi. 10.3390/data8010021

By:

Zavorotnyuk, Denis S.;
Sorokin, Anatoly A.;
Pekov, Stanislav I.;
Bormotov, Denis S.;
Eliferov, Vasiliy A.;
Bocharov, Konstantin V.;
Nikolaev, Eugene N.;
Popov, Igor A.

Publication type:

Article

Speciation of organosulfur compounds in carbonaceous chondrites.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-86576-6

By:

Zherebker, Alexander;
Kostyukevich, Yury;
Volkov, Dmitry S.;
Chumakov, Ratibor G.;
Friederici, Lukas;
Rüger, Christopher P.;
Kononikhin, Alexey;
Kharybin, Oleg;
Korochantsev, Alexander;
Zimmermann, Ralf;
Perminova, Irina V.;
Nikolaev, Eugene

Publication type:

Article

The Structure of Blood Coagulation Factor XIII Is Adapted to Oxidation.

Published in:

Biomolecules (2218-273X), 2020, v. 10, n. 6, p. 914, doi. 10.3390/biom10060914

By:

Vasilyeva, Alexandra;
Yurina, Lyubov;
Shchegolikhin, Alexander;
Indeykina, Maria;
Bugrova, Anna;
Kononikhin, Alexey;
Nikolaev, Eugene;
Rosenfeld, Mark

Publication type:

Article

Determination of Brain Tissue Samples Storage Conditions for Reproducible Intraoperative Lipid Profiling.

Published in:

Molecules, 2022, v. 27, n. 8, p. N.PAG, doi. 10.3390/molecules27082587

By:

Pekov, Stanislav I.;
Zhvansky, Evgeny S.;
Eliferov, Vasily A.;
Sorokin, Anatoly A.;
Ivanov, Daniil G.;
Nikolaev, Eugene N.;
Popov, Igor A.

Publication type:

Article

Spherical Sampler Probes Enhance the Robustness of Ambient Ionization Mass Spectrometry for Rapid Drugs Screening.

Published in:

Molecules, 2022, v. 27, n. 3, p. 945, doi. 10.3390/molecules27030945

By:

Shamraeva, Mariya A.;
Bormotov, Denis S.;
Shamarina, Ekaterina V.;
Bocharov, Konstantin V.;
Peregudova, Olga V.;
Pekov, Stanislav I.;
Nikolaev, Eugene N.;
Popov, Igor A.

Publication type:

Article

Label‐free cervicovaginal fluid proteome profiling reflects the cervix neoplastic transformation.

Published in:

Journal of Mass Spectrometry, 2019, v. 54, n. 8, p. 693, doi. 10.1002/jms.4374

By:

Starodubtseva, Natalia L.;
Brzhozovskiy, Alexander G.;
Bugrova, Anna E.;
Kononikhin, Alexey S.;
Indeykina, Maria I.;
Gusakov, Kiril I.;
Chagovets, Vitaliy V.;
Nazarova, Niso M.;
Frankevich, Vladimir E.;
Sukhikh, Gennady T.;
Nikolaev, Eugene N.

Publication type:

Article

Normalization methods for reducing interbatch effect without quality control samples in liquid chromatography-mass spectrometry-based studies.

Published in:

Analytical & Bioanalytical Chemistry, 2021, v. 413, n. 13, p. 3479, doi. 10.1007/s00216-021-03294-8

By:

Tokareva, Alisa O.;
Chagovets, Vitaliy V.;
Kononikhin, Alexey S.;
Starodubtseva, Natalia L.;
Nikolaev, Eugene N.;
Frankevich, Vladimir E.

Publication type:

Article

Rapid estimation of tumor cell percentage in brain tissue biopsy samples using inline cartridge extraction mass spectrometry.

Published in:

Analytical & Bioanalytical Chemistry, 2021, v. 413, n. 11, p. 2913, doi. 10.1007/s00216-021-03220-y

By:

Pekov, Stanislav I.;
Bormotov, Denis S.;
Nikitin, Pavel V.;
Sorokin, Anatoly A.;
Shurkhay, Vsevolod A.;
Eliferov, Vasiliy A.;
Zavorotnyuk, Denis S.;
Potapov, Alexander A.;
Nikolaev, Eugene N.;
Popov, Igor A.

Publication type:

Article

Machine learning to predict retention time of small molecules in nano-HPLC.

Published in:

Analytical & Bioanalytical Chemistry, 2020, v. 412, n. 28, p. 7767, doi. 10.1007/s00216-020-02905-0

By:

Osipenko, Sergey;
Bashkirova, Inga;
Sosnin, Sergey;
Kovaleva, Oxana;
Fedorov, Maxim;
Nikolaev, Eugene;
Kostyukevich, Yury

Publication type:

Article

Probabilistic model applied to ion abundances in product-ion spectra: quantitative analysis of aspartic acid isomerization in peptides.

Published in:

Analytical & Bioanalytical Chemistry, 2019, v. 411, n. 29, p. 7783, doi. 10.1007/s00216-019-02174-6

By:

Ivanov, Daniil G.;
Indeykina, Maria I.;
Pekov, Stanislav I.;
Iusupov, Adel E.;
Bugrova, Anna E.;
Kononikhin, Alexey S.;
Nikolaev, Eugene N.;
Popov, Igor A.

Publication type:

Article

Speciation of structural fragments in crude oil by means of isotope exchange in near-critical water and Fourier transform mass spectrometry.

Published in:

Analytical & Bioanalytical Chemistry, 2019, v. 411, n. 15, p. 3331, doi. 10.1007/s00216-019-01802-5

By:

Kostyukevich, Yury;
Zherebker, Alexander;
Vlaskin, Mikhail S.;
Roznyatovsky, Vitaliy A.;
Grishin, Yuri K.;
Nikolaev, Eugene

Publication type:

Article

Enumeration of carboxyl groups carried on individual components of humic systems using deuteromethylation and Fourier transform mass spectrometry.

Published in:

Analytical & Bioanalytical Chemistry, 2017, v. 409, n. 9, p. 2477, doi. 10.1007/s00216-017-0197-x

By:

Zherebker, Alexander;
Kostyukevich, Yury;
Kononikhin, Alexey;
Kharybin, Oleg;
Konstantinov, Andrey;
Zaitsev, Kirill;
Nikolaev, Eugene;
Perminova, Irina

Publication type:

Article

A novel direct spray-from-tissue ionization method for mass spectrometric analysis of human brain tumors.

Published in:

Analytical & Bioanalytical Chemistry, 2015, v. 407, n. 25, p. 7797, doi. 10.1007/s00216-015-8947-0

By:

Kononikhin, Alexey;
Zhvansky, Evgeny;
Shurkhay, Vsevolod;
Popov, Igor;
Bormotov, Denis;
Kostyukevich, Yury;
Karchugina, Sofiia;
Indeykina, Maria;
Bugrova, Anna;
Starodubtseva, Natalia;
Potapov, Alexander;
Nikolaev, Eugene

Publication type:

Article

Enumeration of non-labile oxygen atoms in dissolved organic matter by use of O/O exchange and Fourier transform ion-cyclotron resonance mass spectrometry.

Published in:

Analytical & Bioanalytical Chemistry, 2014, v. 406, n. 26, p. 6655, doi. 10.1007/s00216-014-8097-9

By:

Kostyukevich, Yury;
Kononikhin, Alexey;
Zherebker, Alexander;
Popov, Igor;
Perminova, Irina;
Nikolaev, Eugene

Publication type:

Article

Interlaboratory comparison of humic substances compositional space as measured by Fourier transform ion cyclotron resonance mass spectrometry (IUPAC Technical Report).

Published in:

Pure & Applied Chemistry, 2020, v. 92, n. 9, p. 1447, doi. 10.1515/pac-2019-0809

By:

Zherebker, Alexander;
Kim, Sunghwan;
Schmitt-Kopplin, Philippe;
Spencer, Robert G. M.;
Lechtenfeld, Oliver;
Podgorski, David C.;
Hertkorn, Norbert;
Harir, Mourad;
Nurfajin, Nissa;
Koch, Boris;
Nikolaev, Eugene N.;
Shirshin, Evgeny A.;
Berezin, Sergey A.;
Kats, Dmitry S.;
Rukhovich, Gleb D.;
Perminova, Irina V.

Publication type:

Article

Inline cartridge extraction for rapid brain tumor tissue identification by molecular profiling.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-55597-7

By:

Pekov, Stanislav I.;
Eliferov, Vasily A.;
Sorokin, Anatoly A.;
Shurkhay, Vsevolod A.;
Zhvansky, Evgeny S.;
Vorobyev, Alexander S.;
Potapov, Alexander A.;
Nikolaev, Eugene N.;
Popov, Igor A.

Publication type:

Article

Application of de novo sequencing tools to study abiogenic peptide formations by tandem mass spectrometry. The case of homo-peptides from glutamic acid complicated by substitutions of hydrogen by sodium or potassium atoms.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2014, v. 28, n. 1, p. 33, doi. 10.1002/rcm.6757

By:

Terterov, Ivan;
Vyatkina, Kira;
Kononikhin, Alexey S.;
Boitsov, Vitali;
Vyazmin, Sergey;
Popov, Igor A.;
Nikolaev, Eugene N.;
Pevzner, Pavel;
Dubina, Michael

Publication type:

Article

Absorption-mode spectra on the dynamically harmonized Fourier transform ion cyclotron resonance cell.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2012, v. 26, n. 17, p. 2021, doi. 10.1002/rcm.6311

By:

Qi, Yulin;
Witt, Matthias;
Jertz, Roland;
Baykut, Gökhan;
Barrow, Mark P.;
Nikolaev, Eugene N.;
O'Connor, Peter B.

Publication type:

Article

Fourier transform ion cyclotron resonance cell with dynamic harmonization of the electric field in the whole volume by shaping of the excitation and detection electrode assembly.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2011, v. 25, n. 1, p. 122, doi. 10.1002/rcm.4838

By:

Boldin, Ivan A.;
Nikolaev, Eugene N.

Publication type:

Article

Mass spectrometric characterization of photooxidative protein modifications in Arabidopsis thaliana thylakoid membranes.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2011, v. 25, n. 1, p. 184, doi. 10.1002/rcm.4855

By:

Galetskiy, Dmitry;
Lohscheider, Jens N.;
Kononikhin, Alexey S.;
Popov, Igor A.;
Nikolaev, Eugene N.;
Adamska, Iwona

Publication type:

Article

Investigating the Metabolism of Plants Germinated in Heavy Water, D 2 O, and H 2 18 O-Enriched Media Using High-Resolution Mass Spectrometry.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 20, p. 15396, doi. 10.3390/ijms242015396

By:

Osipenko, Sergey;
Bashilov, Anton;
Vishnevskaya, Anna;
Rumiantseva, Lidiia;
Levashova, Anna;
Kovalenko, Anna;
Tupertsev, Boris;
Kireev, Albert;
Nikolaev, Eugene;
Kostyukevich, Yury

Publication type:

Article

Untargeted Lipidomics after D 2 O Administration Reveals the Turnover Rate of Individual Lipids in Various Organs of Living Organisms.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 14, p. 11725, doi. 10.3390/ijms241411725

By:

Kostyukevich, Yury;
Stekolshikova, Elena;
Levashova, Anna;
Kovalenko, Anna;
Vishnevskaya, Anna;
Bashilov, Anton;
Kireev, Albert;
Tupertsev, Boris;
Rumiantseva, Lidiia;
Khaitovich, Philipp;
Osipenko, Sergey;
Nikolaev, Eugene

Publication type:

Article

Simple In Vitro 18 O Labeling for Improved Mass Spectrometry-Based Drug Metabolites Identification: Deep Drug Metabolism Study.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 5, p. 4569, doi. 10.3390/ijms24054569

By:

Tupertsev, Boris;
Osipenko, Sergey;
Kireev, Albert;
Nikolaev, Eugene;
Kostyukevich, Yury

Publication type:

Article

SERPINA1 Peptides in Urine as A Potential Marker of Preeclampsia Severity.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 3, p. 914, doi. 10.3390/ijms21030914

By:

Starodubtseva, Natalia;
Nizyaeva, Natalia;
Baev, Oleg;
Bugrova, Anna;
Gapaeva, Masara;
Muminova, Kamilla;
Kononikhin, Alexey;
Frankevich, Vladimir;
Nikolaev, Eugene;
Sukhikh, Gennady

Publication type:

Article

Methylene Group Transfer in Carbonyl Compounds Discovered in silico and Detected Experimentally.

Published in:

ChemPhysChem, 2019, v. 20, n. 3, p. 361, doi. 10.1002/cphc.201800945

By:

Gridnev, Ilya D.;
Zherebker, Alexander;
Kostyukevich, Yury;
Nikolaev, Eugene

Publication type:

Article

Phosphorylation and nitration levels of photosynthetic proteins are conversely regulated by light stress.

Published in:

Plant Molecular Biology, 2011, v. 77, n. 4-5, p. 461, doi. 10.1007/s11103-011-9824-7

By:

Galetskiy, Dmitry;
Lohscheider, Jens;
Kononikhin, Alexey;
Popov, Igor;
Nikolaev, Eugene;
Adamska, Iwona

Publication type:

Article

The investigation of the bitumen from ancient Greek amphora using FT ICR MS, H/D exchange and novel spectrum reduction approach.

Published in:

Journal of Mass Spectrometry, 2016, v. 51, n. 6, p. 430, doi. 10.1002/jms.3769

By:

Kostyukevich, Yury;
Solovyov, Sergey;
Kononikhin, Alexey;
Popov, Igor;
Nikolaev, Eugene

Publication type:

Article

Conformations of cationized linear oligosaccharides revealed by FTMS combined with in-ESI H/D exchange.

Published in:

Journal of Mass Spectrometry, 2015, v. 50, n. 10, p. 1150, doi. 10.1002/jms.3633

By:

Kostyukevich, Yury;
Kononikhin, Alexey;
Popov, Igor;
Nikolaev, Eugene

Publication type:

Article

Supermetallization of peptides and proteins during electrospray ionization.

Published in:

Journal of Mass Spectrometry, 2015, v. 50, n. 9, p. 1079, doi. 10.1002/jms.3622

By:

Kostyukevich, Yury;
Kononikhin, Alexey;
Popov, Igor;
Indeykina, Maria;
Kozin, Sergey A.;
Makarov, Alexander A.;
Nikolaev, Eugene

Publication type:

Article

Observation of the multiple halogenation of peptides in the electrospray ionization source.

Published in:

Journal of Mass Spectrometry, 2015, v. 50, n. 7, p. 899, doi. 10.1002/jms.3599

By:

Kostyukevich, Yury;
Zhdanova, Ekaterina;
Kononikhin, Alexey;
Popov, Igor;
Kukaev, Eugene;
Nikolaev, Eugene

Publication type:

Article

In ESI-source H/D exchange under atmospheric pressure for peptides and proteins of different molecular weights from 1 to 66 kDa: the role of the temperature of the desolvating capillary on H/D exchange.

Published in:

Journal of Mass Spectrometry, 2015, v. 50, n. 1, p. 49, doi. 10.1002/jms.3535

By:

Kostyukevich, Yury;
Kononikhin, Alexey;
Popov, Igor;
Spasskiy, Alexander;
Nikolaev, Eugene

Publication type:

Article

Conformational changes of ubiquitin during electrospray ionization as determined by in-ESI source H/D exchange combined with high-resolution MS and ECD fragmentation.

Published in:

Journal of Mass Spectrometry, 2014, v. 49, n. 10, p. 989, doi. 10.1002/jms.3409

By:

Kostyukevich, Yury;
Kononikhin, Alexey;
Popov, Igor;
Nikolaev, Eugene

Publication type:

Article

Mass spectrometry based proteome profiling of the exhaled breath condensate for lung cancer biomarkers search.

Published in:

Expert Review of Proteomics, 2021, v. 18, n. 8, p. 637, doi. 10.1080/14789450.2021.1976150

By:

Zakharova, Natalia;
Kozyr, Anna;
Ryabokon, Anna M.;
Indeykina, Maria;
Strelnikova, Polina;
Bugrova, Anna;
Nikolaev, Eugene N.;
Kononikhin, Alexey S.

Publication type:

Article

Mass spectrometry analysis of the diversity of Aβ peptides: difficulties and future perspectives for AD biomarker discovery.

Published in:

Expert Review of Proteomics, 2018, v. 15, n. 10, p. 773, doi. 10.1080/14789450.2018.1525296

By:

Zakharova, Natalia V.;
Bugrova, Anna E.;
Kononikhin, Alexey S.;
Indeykina, Maria I.;
Popov, Igor A.;
Nikolaev, Eugene N.

Publication type:

Article