Works matching AU Nielsen, Rasmus

Results: 442

Eco-Certification in Aquaculture – Economic Incentives and Effects.

Published in:

Reviews in Fisheries Science & Aquaculture, 2025, v. 33, n. 3, p. 402, doi. 10.1080/23308249.2024.2440712

By:

Hammarlund, Cecilia;
Svensson, Kevin;
Asche, Frank;
Bronnmann, Julia;
Osmundsen, Tonje;
Nielsen, Rasmus

Publication type:

Article

A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees.

Published in:

PLoS Biology, 2005, v. 3, n. 5, p. 1, doi. 10.1371/journal.pbio.0030170

By:

Nielsen, Rasmus;
Bustamante, Carlos;
Clark, Andrew G;
Glanowski, Stephen;
Sackton, Timothy B;
Hubisz, Melissa J;
Fledel-Alon, Adi;
Tanenbaum, David M;
Civello, Daniel;
White, Thomas J;
J. Sninsky, John;
Adams, Mark D;
Cargill, Michele

Publication type:

Article

Ancient DNA Chronology within Sediment Deposits: Are Paleobiological Reconstructions Possible and Is DNA Leaching a Factor?

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 4, p. 982, doi. 10.1093/molbev/msm016

By:

Haile, James;
Holdaway, Richard;
Oliver, Karen;
Bunce, Michael;
Gilbert, M. Thomas P.;
Nielsen, Rasmus;
Munch, Kasper;
Ho, Simon Y. W.;
Shapiro, Beth;
Willerslev, Eske

Publication type:

Article

Maximum Likelihood Estimation of Ancestral Codon Usage Bias Parameters in Drosophila.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 1, p. 228

By:

Nielsen, Rasmus;
DuMont, Vanessa L. Bauer;
Hubisz, Melissa J.;
Aquadro, Charles F.

Publication type:

Article

CpG + CpNpG Analysis of Protein-Coding Sequences from Tomato.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 6, p. 1318, doi. 10.1093/molbev/msk017

By:

Hobolth, Asger;
Nielsen, Rasmus;
Ying Wang;
Feinan Wu;
Tanksley, Steven D.

Publication type:

Article

Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 12, p. 2472, doi. 10.1093/molbev/msi237

By:

Jianzhi Zhang;
Nielsen, Rasmus;
Ziheng Yang

Publication type:

Article

Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 4, p. 1107, doi. 10.1093/molbev/msi097

By:

Ziheng Yang;
Wong, Wendy S. W.;
Rasmus Nielsen

Publication type:

Article

Estimating the Distribution of Selection Coefficients from Phylogenetic Data with Applications to Mitochondrial and Viral DNA.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 8, p. 1231, doi. 10.1093/molbev/msg147

By:

Nielsen, Rasmus;
Yang, Ziheng

Publication type:

Article

Pervasive Adaptive Evolution in Mammalian Fertilization Proteins.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 1, p. 18, doi. 10.1093/oxfordjournals.molbev.a004233

By:

Swanson, Willie J.;
Nielsen, Rasmus;
Qiaofeng Yang

Publication type:

Article

Codon-Substitution Models for Detecting Molecular Adaptation at Individual Sites Along Specific Lineages.

Published in:

Molecular Biology & Evolution, 2002, v. 19, n. 6, p. 908, doi. 10.1093/oxfordjournals.molbev.a004148

By:

Yang, Ziheng;
Nielsen, Rasmus

Publication type:

Article

A Maximum Likelihood Method for Analyzing Pseudogene Evolution: Implications for Silent Site Evolution in Humans and Rodents.

Published in:

Molecular Biology & Evolution, 2002, v. 19, n. 1, p. 110, doi. 10.1093/oxfordjournals.molbev.a003975

By:

Bustamante, Carlos D.;
Nielsen, Rasmus;
Hartl, Daniel L.

Publication type:

Article

Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models.

Published in:

Molecular Biology & Evolution, 2000, v. 17, n. 1, p. 32, doi. 10.1093/oxfordjournals.molbev.a026236

By:

Yang, Ziheng;
Nielsen, Rasmus

Publication type:

Article

A de Novo-Designed Monomeric, Compact Three-Helix-Bundle Protein on a Carbohydrate Template.

Published in:

ChemBioChem, 2015, v. 16, n. 13, p. 1905, doi. 10.1002/cbic.201500285

By:

Malik, Leila;
Nygaard, Jesper;
Cristensen, Niels J.;
Madsen, Charlotte S.;
Rösner, Heike I.;
Kragelund, Birthe B.;
Hoiberg‐Nielsen, Rasmus;
Streicher, Werner W.;
Arleth, Lise;
Thulstrup, Peter W.;
Jensen, Knud J.

Publication type:

Article

Design of association studies with pooled or un-pooled next-generation sequencing data.

Published in:

Genetic Epidemiology, 2010, v. 34, n. 5, p. 479, doi. 10.1002/gepi.20501

By:

Kim, Su Yeon;
Li, Yingrui;
Guo, Yiran;
Li, Ruiqiang;
Holmkvist, Johan;
Hansen, Torben;
Pedersen, Oluf;
Wang, Jun;
Nielsen, Rasmus

Publication type:

Article

Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium.

Published in:

Genetic Epidemiology, 2009, v. 33, n. 3, p. 266, doi. 10.1002/gepi.20378

By:

Albrechtsen, Anders;
Sand Korneliussen, Thorfinn;
Moltke, Ida;
van Overseem Hansen, Thomas;
Nielsen, Finn Cilius;
Nielsen, Rasmus

Publication type:

Article

Is haplotype block identification useful for association mapping studies?

Published in:

Genetic Epidemiology, 2004, v. 27, n. 1, p. 80, doi. 10.1002/gepi.20014

By:

Weiwei Zhai;
Melissa Jane Todd;
Rasmus Nielsen

Publication type:

Article

Disease Status at Diagnosis in Danish Children with α 1 -antitrypsin Deficiency.

Published in:

2022

By:

Winther, Christina Louise;
Nyrann, Sofie;
Nielsen, Rasmus Gaardskaer;
Duno, Morten;
Johansen, Klaus Birkelund;
Helt, Thora Wesenberg;
Brix Christensen, Vibeke

Publication type:

journal article

Does infliximab prevent colectomy in acute and chronic active ulcerative colitis?

Published in:

2014

By:

Dan-Nielsen, Steffen;
Wewer, Vibeke;
Paerregaard, Anders;
Hansen, Lars F;
Nielsen, Rasmus G;
Lange, Aksel;
Jakobsen, Christian

Publication type:

Journal Article

Eosinophilic Oesophagitis: Epidemiology, Clinical Aspects, and Association to Allergy.

Published in:

Journal of Pediatric Gastroenterology & Nutrition, 2007, v. 45, n. 3, p. 281, doi. 10.1097/MPG.0b013e31806210c8

By:

Nielsen, Rasmus G;
Husby, Steffen

Publication type:

Article

Towards smart biomanufacturing: a perspective on recent developments in industrial measurement and monitoring technologies for bio-based production processes.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2020, v. 47, n. 11, p. 947, doi. 10.1007/s10295-020-02308-1

By:

Gargalo, Carina L.;
Udugama, Isuru;
Pontius, Katrin;
Lopez, Pau C.;
Nielsen, Rasmus F.;
Hasanzadeh, Aliyeh;
Mansouri, Seyed Soheil;
Bayer, Christoph;
Junicke, Helena;
Gernaey, Krist V.

Publication type:

Article

The link between changing news use and trust: longitudinal analysis of 46 countries.

Published in:

Journal of Communication, 2025, v. 75, n. 1, p. 1, doi. 10.1093/joc/jqae044

By:

Fletcher, Richard;
Andı, Simge;
Badrinathan, Sumitra;
Eddy, Kirsten A;
Kalogeropoulos, Antonis;
Mont'Alverne, Camila;
Robertson, Craig T;
Arguedas, Amy Ross;
Schulz, Anne;
Toff, Benjamin;
Nielsen, Rasmus Kleis

Publication type:

Article

“I Just Google It”: Folk Theories of Distributed Discovery.

Published in:

Journal of Communication, 2018, v. 68, n. 3, p. 636, doi. 10.1093/joc/jqy009

By:

Toff, Benjamin;
Nielsen, Rasmus Kleis

Publication type:

Article

Are News Audiences Increasingly Fragmented? A Cross-National Comparative Analysis of Cross-Platform News Audience Fragmentation and Duplication.

Published in:

Journal of Communication, 2017, v. 67, n. 4, p. 476, doi. 10.1111/jcom.12315

By:

Fletcher, Richard;
Nielsen, Rasmus Kleis

Publication type:

Article

Assessments of emerging science and technologies: Mapping the landscape.

Published in:

Science & Public Policy (SPP), 2014, v. 41, n. 3, p. 306, doi. 10.1093/scipol/scu025

By:

Forsberg, Ellen-Marie;
Thorstensen, Erik;
Nielsen, Rasmus Øjvind;
de Bakker, Erik

Publication type:

Article

Multiple Models of European Marine Fish Stocks: Regional Winners and Losers in a Future Climate.

Published in:

Global Change Biology, 2025, v. 31, n. 4, p. 1, doi. 10.1111/gcb.70149

By:

Sailley, Sévrine F.;
Catalan, Ignacio A.;
Batsleer, Jurgen;
Bossier, Sieme;
Damalas, Dimitrios;
Hansen, Cecilie;
Huret, Martin;
Engelhard, Georg;
Hammon, Katell;
Kay, Susan;
Maynou, Francesc;
Nielsen, J. Rasmus;
Ospina‐Álvarez, Andrés;
Pinnegar, John;
Poos, Jan Jaap;
Sgardeli, Vasiliki;
Peck, Myron A.

Publication type:

Article

Environmental, economic, and social sustainability in aquaculture: the aquaculture performance indicators.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49556-8

By:

Garlock, Taryn M.;
Asche, Frank;
Anderson, James L.;
Eggert, Håkan;
Anderson, Thomas M.;
Che, Bin;
Chávez, Carlos A.;
Chu, Jingjie;
Chukwuone, Nnaemeka;
Dey, Madan M.;
Fitzsimmons, Kevin;
Flores, Jimely;
Guillen, Jordi;
Kumar, Ganesh;
Liu, Lijun;
Llorente, Ignacio;
Nguyen, Ly;
Nielsen, Rasmus;
Pincinato, Ruth B. M.;
Sudhakaran, Pratheesh O.

Publication type:

Article

Predicting Egg Passage Adaptations to Design Better Vaccines for the H3N2 Influenza Virus.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 9, p. 2065, doi. 10.3390/v14092065

By:

Liu, Yunsong;
Chen, Hui;
Duan, Wenyuan;
Zhang, Xinyi;
He, Xionglei;
Nielsen, Rasmus;
Ma, Liang;
Zhai, Weiwei

Publication type:

Article

Establishing a benchmarking for fish farming - Profitability, productivity and energy efficiency of German, Danish and Turkish rainbow trout grow-out systems.

Published in:

Aquaculture Research, 2017, v. 48, n. 6, p. 3134, doi. 10.1111/are.13144

By:

Lasner, Tobias;
Brinker, Alexander;
Nielsen, Rasmus;
Rad, Ferit

Publication type:

Article

The importance of live-feed traps - farming marine fish species.

Published in:

Aquaculture Research, 2017, v. 48, n. 6, p. 2623, doi. 10.1111/are.13281

By:

Nielsen, Rasmus;
Nielsen, Max;
Abate, Tenaw Gedefaw;
Hansen, Benni Winding;
Jepsen, Per Meyer;
Nielsen, Søren Laurentius;
Støttrup, Josianne Gatt;
Buchmann, Kurt

Publication type:

Article

Restructuring European freshwater aquaculture from family-owned to large-scale firms - lessons from Danish aquaculture.

Published in:

Aquaculture Research, 2016, v. 47, n. 12, p. 3852, doi. 10.1111/are.12836

By:

Nielsen, Rasmus;
Asche, Frank;
Nielsen, Max

Publication type:

Article

Balancing Product Reviews, Traffic Targets, and Industry Criticism: UK Technology Journalism in Practice.

Published in:

Journalism Practice, 2021, v. 15, n. 10, p. 1479, doi. 10.1080/17512786.2020.1783567

By:

Brennen, J. Scott;
Howard, Philip N.;
Nielsen, Rasmus K.

Publication type:

Article

Corrigendum: DISPLACE: a dynamic, individual-based model for spatial fishing planning and effort displacement - integrating underlying fish population models.

Published in:

Canadian Journal of Fisheries & Aquatic Sciences, 2016, v. 73, n. 3, p. 469, doi. 10.1139/cjfas-2015-0569

By:

Bastardie, Francois;
Nielsen, J. Rasmus;
Miethe, Tanja

Publication type:

Article

DISPLACE: a dynamic, individual-based model for spatial fishing planning and effort displacement - integrating underlying fish population models.

Published in:

Canadian Journal of Fisheries & Aquatic Sciences, 2014, v. 71, n. 3, p. 366, doi. 10.1139/cjfas-2013-0126

By:

Bastardie, Francois;
Nielsen, J. Rasmus;
Miethe, Tanja

Publication type:

Article

Does Metabolism Regulate Cardiac Repair in the Regeneration Competent Axolotl Salamander?

Published in:

FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.R1919

By:

Dittrich, Anita;
Andersson, Sofie A.;
Busk, Morten;
Nielsen, Rasmus J.;
Lauridsen, Henrik

Publication type:

Article

Q&A: Where did the Neanderthals go?

Published in:

BMC Biology, 2017, v. 15, n. 1, p. 1, doi. 10.1186/s12915-017-0414-2

By:

Harris, Kelley;
Nielsen, Rasmus

Publication type:

Article

An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data.

Published in:

PLoS Genetics, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pgen.1008384

By:

Stern, Aaron J.;
Wilton, Peter R.;
Nielsen, Rasmus

Publication type:

Article

Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change.

Published in:

PLoS Genetics, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pgen.1008119

By:

Bi, Ke;
Linderoth, Tyler;
Singhal, Sonal;
Vanderpool, Dan;
Patton, James L.;
Nielsen, Rasmus;
Moritz, Craig;
Good, Jeffrey M.

Publication type:

Article

Exploring Variation in the d <sub> N </sub> /d <sub> S </sub> Ratio Among Sites and Lineages Using Mutational Mappings: Applications to the Influenza Virus.

Published in:

Journal of Molecular Evolution, 2007, v. 65, n. 3, p. 340, doi. 10.1007/s00239-007-9019-7

By:

Weiwei Zhai;
Slatkin, Montgomery;
Nielsen, Rasmus

Publication type:

Article

Adaptive Diversification of Vomeronasal Receptor 1 Genes in Rodents.

Published in:

Journal of Molecular Evolution, 2005, v. 60, n. 5, p. 566, doi. 10.1007/s00239-004-0172-y

By:

Peng Shi;
Bielawski, Joseph P.;
Hui Yang;
Ya-ping Zhang;
Nielsen, Rasmus

Publication type:

Article

Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System.

Published in:

Journal of Molecular Evolution, 2005, v. 60, n. 3, p. 315, doi. 10.1007/s00239-004-0153-1

By:

Sainudiin, Raazesh;
Wong, Wendy;
Yogeeswaran, Krithika;
Nasrallah, June;
Yang, Ziheng;
Nielsen, Rasmus

Publication type:

Article

Proportionally more deleterious genetic variation in European than in African populations.

Published in:

Nature, 2008, v. 451, n. 7181, p. 994, doi. 10.1038/nature06611

By:

Lohmueller, Kirk E.;
Indap, Amit R.;
Schmidt, Steffen;
Boyko, Adam R.;
Hernandez, Ryan D.;
Hubisz, Melissa J.;
Sninsky, John J.;
White, Thomas J.;
Sunyaev, Shamil R.;
Nielsen, Rasmus;
Clark, Andrew G.;
Bustamante, Carlos D.

Publication type:

Article

Comparative genomics: Difference of expression.

Published in:

Nature, 2006, v. 440, n. 7081, p. 161, doi. 10.1038/440161a

By:

Nielsen, Rasmus

Publication type:

Article

Natural selection on protein-coding genes in the human genome.

Published in:

Nature, 2005, v. 437, n. 7062, p. 1153, doi. 10.1038/nature04240

By:

Bustamante, Carlos D.;
Fledel-Alon, Adi;
Williamson, Scott;
Nielsen, Rasmus;
Hubisz, Melissa Todd;
Glanowski, Stephen;
Tanenbaum, David M.;
White, Thomas J.;
Sninsky, John J.;
Hernandez, Ryan D.;
Civello, Daniel;
Adams, Mark D.;
Cargill, Michele;
Clark, Andrew G.

Publication type:

Article

Human genomics: Disclosure of variation.

Published in:

Nature, 2005, v. 434, n. 7031, p. 288, doi. 10.1038/434288a

By:

Nielsen, Rasmus

Publication type:

Article

Evolutionary genomics: Detecting selection needs comparative data.

Published in:

Nature, 2005, v. 433, n. 7023, p. E6, doi. 10.1038/nature03222

By:

Nielsen, Rasmus;
Hubisz, Melissa J.

Publication type:

Article

vcfgl: a flexible genotype likelihood simulator for VCF/BCF files Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf098

By:

Altinkaya, Isin;
Nielsen, Rasmus;
Korneliussen, Thorfinn Sand

Publication type:

Article

SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing.

Published in:

Bioinformatics, 2022, v. 38, n. 7, p. 1801, doi. 10.1093/bioinformatics/btac041

By:

Hui, Sandra;
Nielsen, Rasmus

Publication type:

Article

AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees.

Published in:

Bioinformatics, 2022, v. 38, n. 3, p. 663, doi. 10.1093/bioinformatics/btab723

By:

Pipes, Lenore;
Nielsen, Rasmus

Publication type:

Article

The Effects of a Lifestyle Intervention Supported by the InterWalk Smartphone App on Increasing Physical Activity Among Persons With Type 2 Diabetes: Parallel-Group, Randomized Trial.

Published in:

JMIR mHealth & uHealth, 2022, v. 10, n. 9, p. 1, doi. 10.2196/30602

By:

Thorsen, Ida Kær;
Yanxiang Yang;
Valentiner, Laura Staun;
Glümer, Charlotte;
Karstoft, Kristian;
Brønd, Jan Christian;
Nielsen, Rasmus Oestergaard;
Brøns, Charlotte;
Christensen, Robin;
Nielsen, Jens Steen;
Vaag, Allan Arthur;
Pedersen, Bente Klarlund;
Langberg, Henning;
Ried-Larsen, Mathias

Publication type:

Article

Citizen science data confirm that expanding non‐breeding distributions of goose and swan species correlate with their increasing abundance.

Published in:

Ibis (0019-1019), 2025, v. 167, n. 1, p. 88, doi. 10.1111/ibi.13302

By:

Heldbjerg, Henning;
Nyegaard, Timme;
Clausen, Preben;
Nielsen, Rasmus Due;
Fox, Anthony D.

Publication type:

Article