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Integrating Genome-Scale Metabolic Models with Patient Plasma Metabolome to Study Endothelial Metabolism In Situ.
- Published in:
- International Journal of Molecular Sciences, 2024, v. 25, n. 10, p. 5406, doi. 10.3390/ijms25105406
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- Article
Harnessing metabolic plasticity in CHO cells for enhanced perfusion cultivation.
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- Biotechnology & Bioengineering, 2024, v. 121, n. 4, p. 1371, doi. 10.1002/bit.28613
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- Publication type:
- Article
LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models.
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- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-023-05616-2
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- Article
A Multi-Level Systems Biology Analysis of Aldrin's Metabolic Effects on Prostate Cancer Cells.
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- Proteomes, 2023, v. 11, n. 2, p. 11, doi. 10.3390/proteomes11020011
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- Article
A Protocol for the Automatic Construction of Highly Curated Genome-Scale Models of Human Metabolism.
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- Bioengineering (Basel), 2023, v. 10, n. 5, p. 576, doi. 10.3390/bioengineering10050576
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- Article
Enhancing CHO cell productivity through a dual selection system using Aspg and Gs in glutamine free medium.
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- Biotechnology & Bioengineering, 2023, v. 120, n. 4, p. 1159, doi. 10.1002/bit.28318
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- Article
Endothelial Cell Phenotypes Demonstrate Different Metabolic Patterns and Predict Mortality in Trauma Patients.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 3, p. 2257, doi. 10.3390/ijms24032257
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- Article
The topology of genome-scale metabolic reconstructions unravels independent modules and high network flexibility.
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- PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010203
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- Article
Modeling apoptosis resistance in CHO cells with CRISPR‐mediated knockouts of Bak1, Bax, and Bok.
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- Biotechnology & Bioengineering, 2022, v. 119, n. 6, p. 1380, doi. 10.1002/bit.28062
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- Article
Irritable bowel syndrome and microbiome; Switching from conventional diagnosis and therapies to personalized interventions.
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- 2022
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- journal article
Soft‐sensors application for automated feeding control in high‐throughput mammalian cell cultures.
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- Biotechnology & Bioengineering, 2022, v. 119, n. 4, p. 1077, doi. 10.1002/bit.28032
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- Article
GRASP: a computational platform for building kinetic models of cellular metabolism.
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- Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac066
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- Article
Network mapping of primary CD34+ cells by Ampliseq based whole transcriptome targeted resequencing identifies unexplored differentiation regulatory relationships.
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- PLoS ONE, 2021, v. 16, n. 2, p. 1, doi. 10.1371/journal.pone.0246107
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- Article
'Omics driven discoveries of gene targets for apoptosis attenuation in CHO cells.
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- Biotechnology & Bioengineering, 2021, v. 118, n. 1, p. 481, doi. 10.1002/bit.27548
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- Publication type:
- Article
Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetani.
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- Journal of Industrial Microbiology & Biotechnology, 2020, v. 47, n. 12, p. 1059, doi. 10.1007/s10295-020-02330-3
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- Article
A Pan-Genome Guided Metabolic Network Reconstruction of Five Propionibacterium Species Reveals Extensive Metabolic Diversity.
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- Genes, 2020, v. 11, n. 10, p. 1115, doi. 10.3390/genes11101115
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- Article
Heterologous Production of 6-Deoxyerythronolide B in Escherichia coli through the Wood Werkman Cycle.
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- Metabolites (2218-1989), 2020, v. 10, n. 6, p. 228, doi. 10.3390/metabo10060228
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- Article
Correction to: Deletion of the hypothetical protein SCO2127 of Streptomyces coelicolor allowed identification of a new regulator of actinorhodin production.
- Published in:
- 2020
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- Correction Notice
Attenuating apoptosis in Chinese hamster ovary cells for improved biopharmaceutical production.
- Published in:
- Biotechnology & Bioengineering, 2020, v. 117, n. 4, p. 1187, doi. 10.1002/bit.27269
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- Article
Engineering Escherichia coli for propionic acid production through the Wood–Werkman cycle.
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- Biotechnology & Bioengineering, 2020, v. 117, n. 1, p. 167, doi. 10.1002/bit.27182
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- Publication type:
- Article
Stoichiometric gene-to-reaction associations enhance model-driven analysis performance: Metabolic response to chronic exposure to Aldrin in prostate cancer.
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- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5979-4
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- Article
Revisiting the Evolution and Taxonomy of Clostridia, a Phylogenomic Update.
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- Genome Biology & Evolution, 2019, v. 11, n. 7, p. 2035, doi. 10.1093/gbe/evz096
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- Article
Improving culture performance and antibody production in CHO cell culture processes by reducing the Warburg effect.
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- Biotechnology & Bioengineering, 2018, v. 115, n. 9, p. 2315, doi. 10.1002/bit.26724
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- Article
Linking genotype and phenotype in an economically viable propionic acid biosynthesis process.
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- Biotechnology for Biofuels, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13068-018-1222-9
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- Publication type:
- Article
Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05555-0
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- Article
Toward industrial production of isoprenoids in <italic>Escherichia coli</italic>: Lessons learned from CRISPR‐Cas9 based optimization of a chromosomally integrated mevalonate pathway.
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- Biotechnology & Bioengineering, 2018, v. 115, n. 4, p. 1000, doi. 10.1002/bit.26530
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- Publication type:
- Article
RNA‐Seq Highlights High Clonal Variation in Monoclonal Antibody Producing CHO Cells.
- Published in:
- Biotechnology Journal, 2018, v. 13, n. 3, p. 1, doi. 10.1002/biot.201700231
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- Article
Quantitative analysis of tetrahydrofolate metabolites from <italic>clostridium autoethanogenum</italic>.
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- Metabolomics, 2018, v. 14, n. 3, p. 0, doi. 10.1007/s11306-018-1331-2
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- Publication type:
- Article
Overexpression of the regulatory subunit of glutamate-cysteine ligase enhances monoclonal antibody production in CHO cells.
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- Biotechnology & Bioengineering, 2017, v. 114, n. 8, p. 1825, doi. 10.1002/bit.26316
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- Publication type:
- Article
Coupling gene regulatory patterns to bioprocess conditions to optimize synthetic metabolic modules for improved sesquiterpene production in yeast.
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- Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0728-x
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- Article
Improved production of propionic acid using genome shuffling.
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- Biotechnology Journal, 2017, v. 12, n. 2, p. n/a, doi. 10.1002/biot.201600120
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- Publication type:
- Article
Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless flux optimization of metabolic models.
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- Bioinformatics, 2016, v. 32, n. 24, p. 3807, doi. 10.1093/bioinformatics/btw555
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- Publication type:
- Article
Metabolic Reconstruction of Setaria italica: A Systems Biology Approach for Integrating Tissue-Specific Omics and Pathway Analysis of Bioenergy Grasses.
- Published in:
- Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.01138
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- Article
ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks.
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- Bioinformatics, 2016, v. 32, n. 15, p. 2330, doi. 10.1093/bioinformatics/btw132
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- Article
Construction of feasible and accurate kinetic models of metabolism: A Bayesian approach.
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- Scientific Reports, 2016, p. 29635, doi. 10.1038/srep29635
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- Article
Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals.
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- Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0181-2
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- Publication type:
- Article
Cyclic-di- AMP synthesis by the diadenylate cyclase CdaA is modulated by the peptidoglycan biosynthesis enzyme GlmM in L actococcus lactis.
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- Molecular Microbiology, 2016, v. 99, n. 6, p. 1015, doi. 10.1111/mmi.13281
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- Article
Systems biology and metabolic modelling unveils limitations to polyhydroxybutyrate accumulation in sugarcane leaves; lessons for C<sub>4</sub> engineering.
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- Plant Biotechnology Journal, 2016, v. 14, n. 2, p. 567, doi. 10.1111/pbi.12399
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- Article
Systems analysis of methylerythritol-phosphate pathway flux in E. coli: insights into the role of oxidative stress and the validity of lycopene as an isoprenoid reporter metabolite.
- Published in:
- Microbial Cell Factories, 2015, v. 14, p. 1, doi. 10.1186/s12934-015-0381-7
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- Article
Controlling heterologous gene expression in yeast cell factories on different carbon substrates and across the diauxic shift: a comparison of yeast promoter activities.
- Published in:
- Microbial Cell Factories, 2015, v. 14, n. 1, p. 1, doi. 10.1186/s12934-015-0278-5
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- Publication type:
- Article
The use of an acetoacetyl-Co A synthase in place of a β-ketothiolase enhances poly-3-hydroxybutyrate production in sugarcane mesophyll cells.
- Published in:
- Plant Biotechnology Journal, 2015, v. 13, n. 5, p. 700, doi. 10.1111/pbi.12298
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- Publication type:
- Article
Dynamic regulation of gene expression using sucrose responsive promoters and RNA interference in Saccharomyces cerevisiae.
- Published in:
- Microbial Cell Factories, 2015, v. 14, n. 1, p. 1, doi. 10.1186/s12934-015-0223-7
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- Publication type:
- Article
Intracellular Trafficking of Baculovirus Particles: A Quantitative Study of the HearNPV/HzAM1 Cell and AcMNPV/Sf9 Cell Systems.
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- Viruses (1999-4915), 2015, v. 7, n. 5, p. 2288, doi. 10.3390/v7052288
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- Article
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.
- Published in:
- Nature Methods, 2015, v. 12, n. 4, p. 339, doi. 10.1038/nmeth.3321
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- Publication type:
- Article
A General Framework for Thermodynamically Consistent Parameterization and Efficient Sampling of Enzymatic Reactions.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004195
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- Publication type:
- Article
A multi-tissue genome-scale metabolic modeling framework for the analysis of whole plant systems.
- Published in:
- Frontiers in Plant Science, 2015, v. 5, p. 1, doi. 10.3389/fpls.2015.00004
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- Publication type:
- Article
Absolute counting of neutrophils in whole blood using flow cytometry.
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- Cytometry. Part A, 2014, v. 85, n. 12, p. 1057, doi. 10.1002/cyto.a.22503
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- Article
Dynamic Balancing of Isoprene Carbon Sources Reflects Photosynthetic and Photorespiratory Responses to Temperature Stress.
- Published in:
- Plant Physiology, 2014, v. 166, n. 4, p. 2051, doi. 10.1104/pp.114.247494
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- Publication type:
- Article
Extracting reaction networks from databases–opening Pandora’s box.
- Published in:
- Briefings in Bioinformatics, 2014, v. 15, n. 6, p. 973, doi. 10.1093/bib/bbt058
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- Article
Factors affecting polyhydroxybutyrate accumulation in mesophyll cells of sugarcane and switchgrass.
- Published in:
- BMC Biotechnology, 2014, v. 14, p. 1
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- Publication type:
- Article