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Complete pipeline for Oxford Nanopore Technology amplicon sequencing (ONT‐AmpSeq): from pre‐processing to creating an operational taxonomic unit table.
- Published in:
- FEBS Open Bio, 2024, v. 14, n. 11, p. 1779, doi. 10.1002/2211-5463.13868
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- Article
In vivo gene expression in a Staphylococcus aureus prosthetic joint infection characterized by RNA sequencing and metabolomics: a pilot study.
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- BMC Microbiology, 2016, v. 16, p. 1, doi. 10.1186/s12866-016-0695-6
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- Article
Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6445-z
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- Article
Health benefits of microalgae and their microbiomes.
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- Microbial Biotechnology, 2022, v. 15, n. 7, p. 1966, doi. 10.1111/1751-7915.14082
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- Article
Metabolic model for the filamentous 'Candidatus Microthrix parvicella' based on genomic and metagenomic analyses.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 6, p. 1161, doi. 10.1038/ismej.2013.6
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- Article
A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 3, p. 543, doi. 10.1038/ismej.2012.136
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- Article
Physiology and behaviour of marine Thioploca.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 6, p. 647, doi. 10.1038/ismej.2009.17
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- Article
Use of Microautoradiography to Study in situ Physiology of Bacteria in Biofilms.
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- Reviews in Environmental Science & Biotechnology, 2003, v. 2, n. 2, p. 261, doi. 10.1023/B:RESB.0000040464.52512.44
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- Article
The Gut Microbiome of 54 Mammalian Species.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.886252
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- Article
Enhancing metaproteomics-The value of models and defined environmental microbial systems.
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- Proteomics, 2016, v. 16, n. 5, p. 783, doi. 10.1002/pmic.201500305
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- Article
Food origin influences microbiota and stable isotope enrichment profiles of cold-adapted Collembola (Desoria ruseki).
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1030429
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- Article
Antifungal Resistance in Isolates of Aspergillus from a Pig Farm.
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- Atmosphere, 2021, v. 12, n. 7, p. 826, doi. 10.3390/atmos12070826
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- Article
Potential Respiratory Deposition and Species Composition of Airborne Culturable, Viable, and Non-Viable Fungi during Occupancy in a Pig Farm.
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- Atmosphere, 2020, v. 11, n. 6, p. 639, doi. 10.3390/atmos11060639
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- Article
MiDAS: the field guide to the microbes of activated sludge.
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- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav062
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- Article
What can Camera Concepts Sense for You - that Conventional Sampling Methods do not?
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- Journal of Ocean Technology, 2024, v. 19, n. 3, p. 49
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- Article
Genetic structure of the European hedgehog (Erinaceus europaeus) in Denmark.
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- PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0227205
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- Article
Energetically exploiting lignocellulose-rich residues in anaerobic digestion technologies: from bioreactors to proteogenomics.
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- Biotechnology for Biofuels & Bioproducts, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13068-023-02432-x
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- Article
The Microbiome of Animals: Implications for Conservation Biology.
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- International Journal of Genomics, 2016, p. 1, doi. 10.1155/2016/5304028
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- Article
Identification of active denitrifiers in full-scale nutrient removal wastewater treatment systems.
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- Environmental Microbiology, 2016, v. 18, n. 1, p. 50, doi. 10.1111/1462-2920.12614
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- Article
High and stable substrate specificities of microorganisms in enhanced biological phosphorus removal plants.
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- Environmental Microbiology, 2013, v. 15, n. 6, p. 1821, doi. 10.1111/1462-2920.12074
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- Article
' Candidatus Halomonas phosphatis', a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants.
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- Environmental Microbiology, 2012, v. 14, n. 10, p. 2826, doi. 10.1111/j.1462-2920.2012.02826.x
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- Article
Extracellular DNA is abundant and important for microcolony strength in mixed microbial biofilms.
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- Environmental Microbiology, 2011, v. 13, n. 3, p. 710, doi. 10.1111/j.1462-2920.2010.02375.x
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- Article
Amyloid adhesins are abundant in natural biofilms.
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- Environmental Microbiology, 2007, v. 9, n. 12, p. 3077, doi. 10.1111/j.1462-2920.2007.01418.x
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- Article
In situ substrate conversion and assimilation by nitrifying bacteria in a model biofilm.
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- Environmental Microbiology, 2005, v. 7, n. 9, p. 1392, doi. 10.1111/j.1462-2920.2005.00826.x
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- Article
Quantification of cell-specific substrate uptake by probe-defined bacteria under in situ conditions by microautoradiography and fluorescence in situ hybridization.
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- Environmental Microbiology, 2003, v. 5, n. 3, p. 202, doi. 10.1046/j.1462-2920.2003.00402.x
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- Article
In situ studies of the phylogeny and physiology of filamentous bacteria with attached growth.
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- Environmental Microbiology, 2002, v. 4, n. 7, p. 383, doi. 10.1046/j.1462-2920.2002.00316.x
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- Article
Studies on the in situ physiology ofThiothrix spp. present in activated sludge.
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- Environmental Microbiology, 2000, v. 2, n. 4, p. 389, doi. 10.1046/j.1462-2920.2000.00120.x
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- Article
Pig slurry organic matter transformation and methanogenesis at ambient storage temperatures.
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- Journal of Environmental Quality, 2023, v. 52, n. 6, p. 1139, doi. 10.1002/jeq2.20512
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- Article
Author Correction: eDNA metabarcoding for biodiversity assessment, generalist predators as sampling assistants.
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- 2021
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- Correction Notice
eDNA metabarcoding for biodiversity assessment, generalist predators as sampling assistants.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-85488-9
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- Article
Bacterial Communities Associated with Houseflies (Musca domestica L.) Sampled within and between Farms.
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- PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0169753
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- Article
Cellulolytic and Xylanolytic Microbial Communities Associated With Lignocellulose-Rich Wheat Straw Degradation in Anaerobic Digestion.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.645174
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- Article
Impact of water quality parameters on geosmin levels and geosmin producers in European recirculating aquaculture systems.
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- Journal of Applied Microbiology, 2022, v. 132, n. 3, p. 2475, doi. 10.1111/jam.15358
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- Article
Impact of Bacillus spp. spores and gentamicin on the gastrointestinal microbiota of suckling and newly weaned piglets.
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- PLoS ONE, 2018, v. 13, n. 11, p. 1, doi. 10.1371/journal.pone.0207382
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- Article
Revealing the secrets of a 2900-year-old clay brick, discovering a time capsule of ancient DNA.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-38191-w
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- Article
A Review of the Occurrence of Metals and Xenobiotics in European Hedgehogs (Erinaceus europaeus).
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- Animals (2076-2615), 2024, v. 14, n. 2, p. 232, doi. 10.3390/ani14020232
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- Article
Wildlife Conservation at a Garden Level: The Effect of Robotic Lawn Mowers on European Hedgehogs (Erinaceus europaeus).
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- Animals (2076-2615), 2021, v. 11, n. 5, p. 1191, doi. 10.3390/ani11051191
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- Article