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Points of view: Representing genomic structural variation.
Published in:
Nature Methods, 2012, v. 9, n. 7, p. 631, doi. 10.1038/nmeth.2018
By:
- Nielsen, Cydney;
- Wong, Bang
Publication type:
Article
Points of view: Managing deep data in genome browsers.
Published in:
Nature Methods, 2012, v. 9, n. 6, p. 521, doi. 10.1038/nmeth.2049
By:
- Nielsen, Cydney;
- Wong, Bang
Publication type:
Article
Points of view: Representing the genome.
Published in:
Nature Methods, 2012, v. 9, n. 5, p. 423, doi. 10.1038/nmeth.1992
By:
- Nielsen, Cydney;
- Wong, Bang
Publication type:
Article
The Human Epigenome Browser at Washington University.
Published in:
Nature Methods, 2011, v. 8, n. 12, p. 989, doi. 10.1038/nmeth.1772
By:
- Zhou, Xin;
- Maricque, Brett;
- Xie, Mingchao;
- Li, Daofeng;
- Sundaram, Vasavi;
- Martin, Eric A;
- Koebbe, Brian C;
- Nielsen, Cydney;
- Hirst, Martin;
- Farnham, Peggy;
- Kuhn, Robert M;
- Zhu, Jingchun;
- Smirnov, Ivan;
- Kent, W James;
- Haussler, David;
- Madden, Pamela A F;
- Costello, Joseph F;
- Wang, Ting
Publication type:
Article
Visualizing genomes: techniques and challenges.
Published in:
Nature Methods, 2010, v. 7, n. 3s, p. S5, doi. 10.1038/nmeth.1422
By:
- Nielsen, Cydney B.;
- Cantor, Michael;
- Dubchak, Inna;
- Gordon, David;
- Wang, Ting
Publication type:
Article
Visualizing biological data—now and in the future.
Published in:
2010
By:
- O'Donoghue, Seán I.;
- Gavin, Anne-Claude;
- Gehlenborg, Nils;
- Goodsell, David S.;
- Hériché, Jean-Karim;
- Nielsen, Cydney B.;
- North, Chris;
- Olson, Arthur J.;
- Procter, James B.;
- Shattuck, David W.;
- Walter, Thomas;
- Bang Wong
Publication type:
Opinion
Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.
Published in:
2011
By:
- Leung, Anthony K. L.;
- Young, Amanda G.;
- Bhutkar, Arjun;
- Zheng, Grace X.;
- Bosson, Andrew D.;
- Nielsen, Cydney B.;
- Sharp, Phillip A.
Publication type:
Correction Notice
Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.
Published in:
Nature Structural & Molecular Biology, 2011, v. 18, n. 2, p. 237, doi. 10.1038/nsmb.1991
By:
- Leung, Anthony K. L.;
- Young, Amanda G.;
- Bhutkar, Arjun;
- Zheng, Grace X.;
- Bosson, Andrew D.;
- Nielsen, Cydney B.;
- Sharp, Phillip A.
Publication type:
Article
Highlights from the 5th Symposium on Biological Data Visualization: Part 1.
Published in:
2015
By:
- Aerts, Jan;
- Marai, G. Elisabeta;
- Nieselt, Kay;
- Nielsen, Cydney;
- Streit, Marc;
- Weiskopf, Daniel
Publication type:
Proceeding
Conserved role of intragenic DNA methylation in regulating alternative promoters.
Published in:
Nature, 2010, v. 466, n. 7303, p. 253, doi. 10.1038/nature09165
By:
- Maunakea, Alika K.;
- Nagarajan, Raman P.;
- Bilenky, Mikhail;
- Ballinger, Tracy J.;
- D’Souza, Cletus;
- Fouse, Shaun D.;
- Johnson, Brett E.;
- Hong, Chibo;
- Nielsen, Cydney;
- Zhao, Yongjun;
- Turecki, Gustavo;
- Delaney, Allen;
- Varhol, Richard;
- Thiessen, Nina;
- Shchors, Ksenya;
- Heine, Vivi M.;
- Rowitch, David H.;
- Xiaoyun Xing;
- Fiore, Chris;
- Schillebeeckx, Maximiliaan
Publication type:
Article
The genome sequence of the filamentous fungus Neurospora crassa.
Published in:
Nature, 2003, v. 422, n. 6934, p. 859, doi. 10.1038/nature01554
By:
- Galagan, James E.;
- Calvo, Sarah E.;
- Borkovich, Katherine A.;
- Selker, Eric U.;
- Read, Nick D.;
- Jaffe, David;
- FitzHugh, William;
- Ma, Li-Jun;
- Smirnov, Serge;
- Purcell, Seth;
- Rehman, Bushra;
- Elkins, Timothy;
- Engels, Reinhard;
- Wang, Shunguang;
- Nielsen, Cydney B.;
- Butler, Jonathan;
- Endrizzi, Matthew;
- Qui, Dayong;
- Ianakiev, Peter
Publication type:
Article
Patterns of Intron Gain and Loss in Fungi.
Published in:
PLoS Biology, 2004, v. 2, n. 12, p. 2234, doi. 10.1371/journal.pbio.0020422
By:
- Nielsen, Cydney B.;
- Friedman, Brad;
- Birren, Bruce;
- Burge, Christopher B.;
- Galagan, James E.
Publication type:
Article
Patterns of Intron Gain and Loss in Fungi.
Published in:
PLoS Biology, 2004, v. 2, n. 11, p. 1, doi. 10.1371/journal.pbio.0020422
By:
- Nielsen, Cydney B;
- Friedman, Brad;
- Birren, Bruce;
- Burge, Christopher B;
- Galagan, James E
Publication type:
Article
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.
Published in:
Nature, 2015, v. 518, n. 7539, p. 422, doi. 10.1038/nature13952
By:
- Eirew, Peter;
- Steif, Adi;
- Khattra, Jaswinder;
- Ha, Gavin;
- Yap, Damian;
- Farahani, Hossein;
- Gelmon, Karen;
- Chia, Stephen;
- Mar, Colin;
- Wan, Adrian;
- Laks, Emma;
- Biele, Justina;
- Shumansky, Karey;
- Rosner, Jamie;
- McPherson, Andrew;
- Nielsen, Cydney;
- Roth, Andrew J. L.;
- Lefebvre, Calvin;
- Bashashati, Ali;
- de Souza, Camila
Publication type:
Article
Highlights from the 5th Symposium on Biological Data Visualization: Part 2.
Published in:
2015
By:
- Aerts, Jan;
- Marai, G. Elisabeta;
- Nieselt, Kay;
- Nielsen, Cydney;
- Streit, Marc;
- Weiskopf, Daniel
Publication type:
Proceeding
Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study.
Published in:
2016
By:
- Kridel, Robert;
- Chan, Fong Chun;
- Mottok, Anja;
- Boyle, Merrill;
- Farinha, Pedro;
- Tan, King;
- Meissner, Barbara;
- Bashashati, Ali;
- McPherson, Andrew;
- Roth, Andrew;
- Shumansky, Karey;
- Yap, Damian;
- Ben-Neriah, Susana;
- Rosner, Jamie;
- Smith, Maia A.;
- Nielsen, Cydney;
- Giné, Eva;
- Telenius, Adele;
- Ennishi, Daisuke;
- Mungall, Andrew
Publication type:
journal article
ChAsE: chromatin analysis and exploration tool.
Published in:
Bioinformatics, 2016, v. 32, n. 21, p. 3324, doi. 10.1093/bioinformatics/btw382
By:
- Younesy, Hamid;
- Nielsen, Cydney B.;
- Lorincz, Matthew C.;
- Jones, Steven J. M.;
- Karimi, Mohammad M.;
- Möller, Torsten
Publication type:
Article
De novo transcriptome assembly with ABySS.
Published in:
Bioinformatics, 2009, v. 25, n. 21, p. 2872, doi. 10.1093/bioinformatics/btp367
By:
- Birol, Inanç;
- Jackman, Shaun D.;
- Nielsen, Cydney B.;
- Qian, Jenny Q.;
- Varhol, Richard;
- Stazyk, Greg;
- Morin, Ryan D.;
- Zhao, Yongjun;
- Hirst, Martin;
- Schein, Jacqueline E.;
- Horsman, Doug E.;
- Connors, Joseph M.;
- Gascoyne, Randy D.;
- Marra, Marco A.;
- Jones, Steven J. M.
Publication type:
Article

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