Works matching AU Neelamegham, Sriram

Results: 41

Glycosylation Network Analysis Toolbox: a MATLAB-based environment for systems glycobiology.

Published in:

Bioinformatics, 2013, v. 29, n. 3, p. 404, doi. 10.1093/bioinformatics/bts703

By:

Liu, Gang;
Puri, Apurv;
Neelamegham, Sriram

Publication type:

Article

Systems-level modeling of cellular glycosylation reaction networks: O-linked glycan formation on natural selectin ligands.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2740, doi. 10.1093/bioinformatics/btn515

By:

Gang Liu;
Dhananjay D. Marathe;
Khushi L. Matta;
Sriram Neelamegham

Publication type:

Article

In silico Biochemical Reaction Network Analysis (IBRENA): a package for simulation and analysis of reaction networks.

Published in:

Bioinformatics, 2008, v. 24, n. 8, p. 1109, doi. 10.1093/bioinformatics/btn061

By:

Gang Liu;
Sriram Neelamegham

Publication type:

Article

Forward Genetic Screens of Human Glycosylation Pathways Using the GlycoGene CRISPR Library.

Published in:

Current Protocols, 2022, v. 2, n. 4, p. 1, doi. 10.1002/cpz1.402

By:

Kelkar, Anju;
Groth, Theodore;
Neelamegham, Sriram

Publication type:

Article

Selectins and Immune Cells in Acute Myocardial Infarction and Post-infarction Ventricular Remodeling: Pathophysiology and Novel Treatments.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00300

By:

Weil, Brian R.;
Neelamegham, Sriram

Publication type:

Article

Recombinant Sialyltransferase Infusion Mitigates Infection-Driven Acute Lung Inflammation.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00048

By:

Nasirikenari, Mehrab;
Lugade, Amit A.;
Neelamegham, Sriram;
Gao, Zhongwei;
Moremen, Kelley W.;
Bogner, Paul N.;
Thanavala, Yasmin;
Lau, Joseph T. Y.

Publication type:

Article

Sensitivity, principal component and flux analysis applied to signal transduction: the case of epidermal growth factor mediated signaling.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1194

By:

Sriram Neelamegham

Publication type:

Article

Detection of Plasma Protease Activity Using Microsphere-Cytometry Assays with E. coli Derived Substrates: VWF Proteolysis by ADAMTS13.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0126556

By:

Gogia, Shobhit;
Lo, Chi Y.;
Neelamegham, Sriram

Publication type:

Article

A Computational Framework for the Automated Construction of Glycosylation Reaction Networks.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0100939

By:

Liu, Gang;
Neelamegham, Sriram

Publication type:

Article

Systems-level studies of glycosyltransferase gene expression and enzyme activity that are associated with the selectin binding function of human leukocytes.

Published in:

FASEB Journal, 2008, v. 22, n. 12, p. 4154, doi. 10.1096/fj.07-104257

By:

Marathe, Dhananjay D.;
Chandrasekaran, E. V.;
Lau, Joseph T. Y.;
Matta, Khushi L.;
Neelamegham, Sriram

Publication type:

Article

Understanding Glycomechanics Using Mathematical Modeling: A Review of Current Approaches to Simulate Cellular Glycosylation Reaction Networks.

Published in:

Annals of Biomedical Engineering, 2012, v. 40, n. 4, p. 816, doi. 10.1007/s10439-011-0464-5

By:

Puri, Apurv;
Neelamegham, Sriram

Publication type:

Article

Preface to Special Issue: 'Glycomechanics: Sugar Coating Blood Cell-Endothelial Interactions in Shear Flow'.

Published in:

2012

By:

Simon, Scott;
Neelamegham, Sriram;
Konstantopoulos, Konstantinos

Publication type:

Editorial

Harry L. Goldsmith, Ph.D.

Published in:

Annals of Biomedical Engineering, 2008, v. 36, n. 4, p. 523, doi. 10.1007/s10439-008-9479-y

By:

Scott L. Diamond;
Michael B. Lawrence;
Sriram Neelamegham

Publication type:

Article

Differential Regulation of Neutrophil CD18 Integrin Function by Di- and Tri-Valent Cations: Manganese vs. Gadolinium.

Published in:

Annals of Biomedical Engineering, 2008, v. 36, n. 4, p. 647, doi. 10.1007/s10439-008-9446-7

By:

Yi Zhang;
Heather Hayenga;
Melissa Sarantos;
Scott Simon;
Sriram Neelamegham

Publication type:

Article

Drug Delivery: Surfactant‐Stripped Cabazitaxel Micelles Stabilized by Clotrimazole or Mifepristone (Adv. Therap. 3/2020).

Published in:

Advanced Therapeutics, 2020, v. 3, n. 3, p. 1, doi. 10.1002/adtp.202070007

By:

Sun, Boyang;
Chitgupi, Upendra;
Li, Changning;
Federizon, Jasmin;
Zhang, Changjie;
Ruszaj, Donna M.;
Razi, Aida;
Ortega, Joaquin;
Neelamegham, Sriram;
Zhang, Yumiao;
Lovell, Jonathan F

Publication type:

Article

Surfactant‐Stripped Cabazitaxel Micelles Stabilized by Clotrimazole or Mifepristone.

Published in:

Advanced Therapeutics, 2020, v. 3, n. 3, p. 1, doi. 10.1002/adtp.201900161

By:

Sun, Boyang;
Chitgupi, Upendra;
Li, Changning;
Federizon, Jasmin;
Zhang, Changjie;
Ruszaj, Donna M.;
Razi, Aida;
Ortega, Joaquin;
Neelamegham, Sriram;
Zhang, Yumiao;
Lovell, Jonathan F

Publication type:

Article

Current challenges for the targeted delivery and molecular imaging of stem cells in animal models.

Published in:

Bioengineered, 2017, v. 8, n. 4, p. 316, doi. 10.1080/21655979.2016.1233090

By:

Momeni, Arezoo;
Neelamegham, Sriram;
Parashurama, Natesh

Publication type:

Article

Application of microfluidic devices in studies of thrombosis and hemostasis.

Published in:

Platelets, 2017, v. 28, n. 5, p. 434, doi. 10.1080/09537104.2017.1319047

By:

Zhang, Changjie;
Neelamegham, Sriram

Publication type:

Article

Novel interactions of complex carbohydrates with peanut (PNA), Ricinus communis (RCA-I), Sambucus nigra (SNA-I) and wheat germ (WGA) agglutinins as revealed by the binding specificities of these lectins towards mucin core-2 O-linked and N-linked glycans and related structures

Published in:

Glycoconjugate Journal, 2016, v. 33, n. 5, p. 819, doi. 10.1007/s10719-016-9678-y

By:

Chandrasekaran, E.V.;
Xue, Jun;
Xia, Jie;
Khaja, Siraj;
Piskorz, Conrad;
Locke, Robert;
Neelamegham, Sriram;
Matta, Khushi

Publication type:

Article

Overexpression of α2,3sialyl T-antigen in breast cancer determined by miniaturized glycosyltransferase assays and confirmed using tissue microarray immunohistochemical analysis.

Published in:

Glycoconjugate Journal, 2014, v. 31, n. 6/7, p. 509, doi. 10.1007/s10719-014-9548-4

By:

Patil, Shilpa;
Bshara, Wiam;
Morrison, Carl;
Chandrasekaran, E.;
Matta, Khushi;
Neelamegham, Sriram

Publication type:

Article

Using CRISPR-Cas9 to quantify the contributions of O-glycans, N-glycans and Glycosphingolipids to human leukocyte-endothelium adhesion.

Published in:

Scientific Reports, 2016, p. 30392, doi. 10.1038/srep30392

By:

Stolfa, Gino;
Mondal, Nandini;
Zhu, Yuqi;
Yu, Xinheng;
Buffone, Alexander;
Neelamegham, Sriram

Publication type:

Article

Cellular and Molecular Engineering of Glycan Sialylation in Heterologous Systems.

Published in:

Molecules, 2021, v. 26, n. 19, p. 5950, doi. 10.3390/molecules26195950

By:

Hombu, Ryoma;
Neelamegham, Sriram;
Park, Sheldon

Publication type:

Article

Platelet GpIba binding to von Willebrand Factor under fluid shear:contributions of the D′D3-domain, A1-domain flanking peptide and O-linked glycans.

Published in:

2014

By:

Madabhushi, Sri R;
Zhang, Changjie;
Kelkar, Anju;
Dayananda, Kannayakanahalli M;
Neelamegham, Sriram

Publication type:

journal article

Platelet GpIbα Binding to von Willebrand Factor Under Fluid Shear: Contributions of the D'D3-Domain, A1-Domain Flanking Peptide and O-Linked Glycans.

Published in:

Journal of the American Heart Association, 2014, v. 3, n. 5, p. 1, doi. 10.1161/JAHA.114.001420

By:

Madabhushi, Sri R.;
Zhang, Changjie;
Kelkar, Anju;
Dayananda, Kannayakanahalli M.;
Neelamegham, Sriram

Publication type:

Article

DrawGlycan-SNFG: a robust tool to render glycans and glycopeptides with fragmentation information.

Published in:

Glycobiology, 2017, v. 27, n. 3, p. 200, doi. 10.1093/glycob/cww115

By:

Kai Cheng;
Yusen Zhou;
Neelamegham, Sriram

Publication type:

Article

Systems glycobiology: biochemical reaction networks regulating glycan structure and function.

Published in:

Glycobiology, 2011, v. 21, n. 12, p. 1541, doi. 10.1093/glycob/cwr036

By:

Neelamegham, Sriram;
Liu, Gang

Publication type:

Article

Tuning the tropism and infectivity of SARS-CoV-2 virus-like particles for mRNA delivery.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf133

By:

Yang, Qi;
Davidson, Bruce A;
Pajic, Petar;
Chen, Xuyang;
Gokcumen, Omer;
Gao, Min;
Neelamegham, Sriram

Publication type:

Article

Cell- and tissue-specific glycosylation pathways informed by single-cell transcriptomics.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 4, p. 1, doi. 10.1093/nargab/lqae169

By:

Chrysinas, Panagiotis;
Venkatesan, Shriramprasad;
Ang, Isaac;
Ghosh, Vishnu;
Chen, Changyou;
Neelamegham, Sriram;
Gunawan, Rudiyanto

Publication type:

Article

Microclot array elastometry for integrated measurement of thrombus formation and clot biomechanics under fluid shear.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10067-6

By:

Chen, Zhaowei;
Lu, Jiankai;
Zhang, Changjie;
Hsia, Isaac;
Yu, Xinheng;
Marecki, Leo;
Marecki, Eric;
Asmani, Mohammadnabi;
Jain, Shilpa;
Neelamegham, Sriram;
Zhao, Ruogang

Publication type:

Article

Distinct glycosyltransferases synthesize E-selectin ligands in human vs. mouse leukocytes.

Published in:

Cell Adhesion & Migration, 2013, v. 7, n. 3, p. 288, doi. 10.4161/cam.24714

By:

Mondal, Nandini;
Buffone Jr., Alexander;
Neelamegham, Sriram

Publication type:

Article

Bimodal Targeting Using Sulfonated, Mannosylated PEI for Combined Gene Delivery and Photodynamic Therapy.

Published in:

Photochemistry & Photobiology, 2017, v. 93, n. 2, p. 600, doi. 10.1111/php.12688

By:

Chitgupi, Upendra;
Li, Yi;
Chen, Mingfu;
Shao, Shuai;
Beitelshees, Marie;
Tan, Myles Joshua;
Neelamegham, Sriram;
Pfeifer, Blaine A.;
Jones, Charles;
Lovell, Jonathan F.

Publication type:

Article

GlycoEnzOnto: a GlycoEnzyme pathway and molecular function ontology.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5413, doi. 10.1093/bioinformatics/btac704

By:

Groth, Theodore;
Diehl, Alexander D;
Gunawan, Rudiyanto;
Neelamegham, Sriram

Publication type:

Article

DrawGlycan-SNFG and gpAnnotate: rendering glycans and annotating glycopeptide mass spectra.

Published in:

Bioinformatics, 2020, v. 36, n. 6, p. 1942, doi. 10.1093/bioinformatics/btz819

By:

Cheng, Kai;
Pawlowski, Gabrielle;
Yu, Xinheng;
Zhou, Yusen;
Neelamegham, Sriram

Publication type:

Article

Disulfide trapping of protein complexes on the yeast surface.

Published in:

Biotechnology & Bioengineering, 2010, v. 106, n. 1, p. 27, doi. 10.1002/bit.22651

By:

Lim, Kok Hong;
Madabhushi, Sri Ranganayaki;
Mann, Jasdeep;
Neelamegham, Sriram;
Park, Sheldon

Publication type:

Article

Cataloging natural sialic acids and other nonulosonic acids (NulOs), and their representation using the Symbol Nomenclature for Glycans.

Published in:

Glycobiology, 2023, v. 33, n. 2, p. 99, doi. 10.1093/glycob/cwac072

By:

Lewis, Amanda L;
Toukach, Philip;
Bolton, Evan;
Chen, Xi;
Frank, Martin;
Lütteke, Thomas;
Knirel, Yuriy;
Schoenhofen, Ian;
Varki, Ajit;
Vinogradov, Evgeny;
Woods, Robert J;
Zachara, Natasha;
Zhang, Jian;
Kamerling, Johannis P;
Neelamegham, Sriram;
Group, the SNFG Discussion

Publication type:

Article

N-acetyl-β-D-hexosaminidases mediate the generation of paucimannosidic proteins via a putative noncanonical truncation pathway in human neutrophils.

Published in:

Glycobiology, 2022, v. 39, n. 3, p. 218, doi. 10.1093/glycob/cwab108

By:

Ugonotti, Julian;
Kawahara, Rebeca;
Loke, Ian;
Zhu, Yuqi;
Chatterjee, Sayantani;
Tjondro, Harry C;
Sumer-Bayraktar, Zeynep;
Neelamegham, Sriram;
Thaysen-Andersen, Morten

Publication type:

Article

A GlycoGene CRISPR-Cas9 lentiviral library to study lectin binding and human glycan biosynthesis pathways.

Published in:

Glycobiology, 2021, v. 31, n. 3, p. 173, doi. 10.1093/glycob/cwaa074

By:

Zhu, Yuqi;
Groth, Theodore;
Kelkar, Anju;
Zhou, Yusen;
Neelamegham, Sriram

Publication type:

Article

Updates to the Symbol Nomenclature for Glycans guidelines.

Published in:

Glycobiology, 2019, v. 29, n. 9, p. 620, doi. 10.1093/glycob/cwz045

By:

Neelamegham, Sriram;
Aoki-Kinoshita, Kiyoko;
Bolton, Evan;
Frank, Martin;
Lisacek, Frederique;
Lütteke, Thomas;
O'Boyle, Noel;
Packer, Nicolle H;
Stanley, Pamela;
Toukach, Philip;
Varki, Ajit;
Woods, Robert J;
Group, The SNFG Discussion

Publication type:

Article

Inhibition of SARS-CoV-2 viral entry upon blocking N- and O-glycan elaboration.

Published in:

eLife, 2020, p. 1, doi. 10.7554/eLife.61552

By:

Qi Yang;
Hughes, Thomas A.;
Kelkar, Anju;
Xinheng Yu;
Kai Cheng;
Sheldon Park;
Wei-Chiao Huang;
Lovell, Jonathan F.;
Neelamegham, Sriram

Publication type:

Article

Functionalization of cobalt porphyrin-phospholipid bilayers with his-tagged ligands and antigens.

Published in:

Nature Chemistry, 2015, v. 7, n. 5, p. 438, doi. 10.1038/nchem.2236

By:

Shao, Shuai;
Geng, Jumin;
Ah Yi, Hyun;
Gogia, Shobhit;
Neelamegham, Sriram;
Jacobs, Amy;
Lovell, Jonathan F.

Publication type:

Article

Cadherin‐11 increases tumor cell proliferation and metastatic potential via Wnt pathway activation.

Published in:

Molecular Oncology, 2023, v. 17, n. 10, p. 2056, doi. 10.1002/1878-0261.13507

By:

Liu, Yayu;
Lei, Pedro;
Samuel, Ronel Z.;
Kashyap, Anagha M.;
Groth, Theodore;
Bshara, Wiam;
Neelamegham, Sriram;
Andreadis, Stelios T.

Publication type:

Article