Works matching AU Near, Thomas J.

Results: 88

A Genomic Fossil Reveals Key Steps in Hemoglobin Loss by the Antarctic Icefishes.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 11, p. 2008, doi. 10.1093/molbev/msl071

By:

Near, Thomas J.;
Parker, Sandra K.;
Detrich III, H. William

Publication type:

Article

Functional Antifreeze Glycoprotein Genes in Temperate-Water New Zealand Nototheniid Fish Infer an Antarctic Evolutionary Origin.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 11, p. 1897, doi. 10.1093/molbev/msg208

By:

Cheng, Chi-Hing C.;
Chen, Liangbiao;
Near, Thomas J.;
Jin, Yumi

Publication type:

Article

Evolution of the branchiostegal membrane and restricted gill openings in Actinopterygian fishes.

Published in:

Journal of Morphology, 2015, v. 276, n. 6, p. 681, doi. 10.1002/jmor.20371

By:

Farina, Stacy C.;
Near, Thomas J.;
Bemis, William E.

Publication type:

Article

Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K).

Published in:

GigaScience, 2020, v. 9, n. 8, p. 1, doi. 10.1093/gigascience/giaa080

By:

Fan, Guangyi;
Song, Yue;
Yang, Liandong;
Huang, Xiaoyun;
Zhang, Suyu;
Zhang, Mengqi;
Yang, Xianwei;
Chang, Yue;
Zhang, He;
Li, Yongxin;
Liu, Shanshan;
Yu, Lili;
Chu, Jeffery;
Seim, Inge;
Feng, Chenguang;
Near, Thomas J;
Wing, Rod A;
Wang, Wen;
Wang, Kun;
Wang, Jing

Publication type:

Article

Comparative Genomics Reveals Accelerated Evolution of Fright Reaction Genes in Ostariophysan Fishes.

Published in:

Frontiers in Genetics, 2019, v. 10, p. 1, doi. 10.3389/fgene.2019.01283

By:

Yang, Liandong;
Jiang, Haifeng;
Chen, Juan;
Lei, Yi;
Sun, Ning;
Lv, Wenqi;
Near, Thomas J.;
He, Shunping

Publication type:

Article

Conflict and Resolution Between Phylogenies Inferred From Molecular and Phenotypic Data sets for Hagfish, Lampreys, and Gnathostomes.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2009, v. 312B, n. 7, p. 749, doi. 10.1002/jez.b.21293

By:

NEAR, THOMAS J.

Publication type:

Article

Species status and phylogenetic relationships of the enigmatic Negros Fruit Dove (Ptilinopus arcanus).

Published in:

Ibis (0019-1019), 2024, v. 166, n. 3, p. 1023, doi. 10.1111/ibi.13305

By:

Nash, John A.;
Harrington, Richard C.;
Zyskowski, Kristof;
Near, Thomas J.;
Prum, Richard O.

Publication type:

Article

Expansion of vomeronasal receptor genes (OlfC) in the evolution of fright reaction in Ostariophysan fishes.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0479-2

By:

Yang, Liandong;
Jiang, Haifeng;
Wang, Ying;
Lei, Yi;
Chen, Juan;
Sun, Ning;
Lv, Wenqi;
Wang, Cheng;
Near, Thomas J.;
He, Shunping

Publication type:

Article

Phylogenomics and species delimitation of the economically important Black Basses (Micropterus).

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-11743-2

By:

Kim, Daemin;
Taylor, Andrew T.;
Near, Thomas J.

Publication type:

Article

Genomic and phenotypic divergence informs translocation strategies for an endangered freshwater fish.

Published in:

Molecular Ecology, 2021, v. 30, n. 14, p. 3394, doi. 10.1111/mec.15947

By:

Taylor, Liam U.;
Benavides, Edgar;
Simmons, Jeffrey W.;
Near, Thomas J.

Publication type:

Article

Investigating the Impact of Whole-Genome Duplication on Transposable Element Evolution in Teleost Fishes.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 1, p. 1, doi. 10.1093/gbe/evae272

By:

Mallik, Rittika;
Wcisel, Dustin J;
Near, Thomas J;
Yoder, Jeffrey A;
Dornburg, Alex

Publication type:

Article

Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye.

Published in:

BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0786-x

By:

Harrington, Richard C.;
Faircloth, Brant C.;
Eytan, Ron I.;
Smith, W. Leo;
Near, Thomas J.;
Alfaro, Michael E.;
Friedman, Matt

Publication type:

Article

Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0415-0

By:

Eytan, Ron I.;
Evans, Benjamin R.;
Dornburg, Alex;
Lemmon, Alan R.;
Moriarty Lemmon, Emily;
Wainwright, Peter C.;
Near, Thomas J.

Publication type:

Article

Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0415-0

By:

Eytan, Ron I.;
Evans, Benjamin R.;
Dornburg, Alex;
Lemmon, Alan R.;
Lemmon, Emily Moriarty;
Wainwright, Peter C.;
Near, Thomas J.

Publication type:

Article

Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0415-0

By:

Eytan, Ron I.;
Evans, Benjamin R.;
Dornburg, Alex;
Lemmon, Alan R.;
Lemmon, Emily Moriarty;
Wainwright, Peter C.;
Near, Thomas J.

Publication type:

Article

Identification of the notothenioid sister lineage illuminates the biogeographic history of an Antarctic adaptive radiation.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0362-9

By:

Near, Thomas J.;
Dornburg, Alex;
Harrington, Richard C.;
Oliveira, Claudio;
Pietsch, Theodore W.;
Thacker, Christine E.;
Satoh, Takashi P.;
Katayama, Eri;
Wainwright, Peter C.;
Eastman, Joseph T.;
Beaulieu, Jeremy M.

Publication type:

Article

Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 113, doi. 10.1186/s12862-015-0415-0

By:

Eytan, Ron I.;
Evans, Benjamin R.;
Dornburg, Alex;
Lemmon, Alan R.;
Lemmon, Emily Moriarty;
Wainwright, Peter C.;
Near, Thomas J.

Publication type:

Article

Phylogenetic informativeness reconciles ray-finned fish molecular divergence times.

Published in:

BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/s12862-014-0169-0

By:

Dornburg, Alex;
Townsend, Jeffrey P.;
Friedman, Matt;
Near, Thomas J.

Publication type:

Article

Gene flow between an endangered endemic iguana, and its wide spread relative, on the island of Utila, Honduras: when is hybridization a threat? Does hybridization threaten an endangered iguana?

Published in:

Conservation Genetics, 2009, v. 10, n. 5, p. 1247, doi. 10.1007/s10592-008-9692-0

By:

Pasachnik, Stesha A.;
Fitzpatrick, Benjamin M.;
Near, Thomas J.;
Echternacht, Arthur C.

Publication type:

Article

Evolutionary origins of the lampriform pelagic radiation.

Published in:

Zoological Journal of the Linnean Society, 2024, v. 201, n. 2, p. 422, doi. 10.1093/zoolinnean/zlad142

By:

Brownstein, Chase Doran;
Near, Thomas J

Publication type:

Article

Evolution and Function of the Globin Intergenic Regulatory Regions of the Antarctic Dragonfishes (Notothenioidei: Bathydraconidae).

Published in:

Molecular Biology & Evolution, 2012, v. 29, n. 3, p. 1071, doi. 10.1093/molbev/msr278

By:

Lau, Yuk-Ting;
Parker, Sandra K.;
Near, Thomas J.;
Detrich, H. William

Publication type:

Article

Relaxed Clocks and Inferences of Heterogeneous Patterns of Nucleotide Substitution and Divergence Time Estimates across Whales and Dolphins (Mammalia: Cetacea).

Published in:

Molecular Biology & Evolution, 2012, v. 29, n. 2, p. 721, doi. 10.1093/molbev/msr228

By:

Dornburg, Alex;
Brandley, Matthew C.;
McGowen, Michael R.;
Near, Thomas J.

Publication type:

Article

Acanthocephalan Phylogeny and the Evolution of Parasitism.

Published in:

Integrative & Comparative Biology, 2002, v. 42, n. 3, p. 668, doi. 10.1093/icb/42.3.668

By:

Near, Thomas J.

Publication type:

Article

Reproductive traits and age of barbeled plunderfishes from the Weddell Sea.

Published in:

Antarctic Science, 2020, v. 32, n. 4, p. 239, doi. 10.1017/S0954102020000140

By:

La Mesa, Mario;
Donato, Fortunata;
Riginella, Emilio;
Papetti, Chiara;
Parker, Elyse;
Near, Thomas J.

Publication type:

Article

Cytogenetic diversity in the Antarctic plunderfishes (Notothenioidei: Artedidraconidae).

Published in:

Antarctic Science, 2010, v. 22, n. 6, p. 805, doi. 10.1017/S0954102010000660

By:

Ghigliotti, Laura;
Near, Thomas J.;
Ferrando, Sara;
Vacchi, Marino;
Pisano, Eva

Publication type:

Article

Biology of the Antarctic dragonfish Vomeridens infuscipinnis (Notothenioidei: Bathydraconidae).

Published in:

Antarctic Science, 2010, v. 23, n. 1, p. 18, doi. 10.1017/S095410201000060X

By:

Kuhn, Kristen L.;
Near, Thomas J.;
Detrich III, H. William;
Eastman, Joseph T.

Publication type:

Article

Phylogeny of Trematomus (Notothenioidei: Nototheniidae) inferred from mitochondrial and nuclear gene sequences.

Published in:

Antarctic Science, 2009, v. 21, n. 6, p. 565, doi. 10.1017/S0954102009990253

By:

KUHN, KRISTEN L.;
NEAR, THOMAS J.

Publication type:

Article

Geographic intraspecific variation in buoyancy within Antarctic notothenioid fishes.

Published in:

Antarctic Science, 2009, v. 21, n. 2, p. 123, doi. 10.1017/S0954102008001661

By:

Near, Thomas J.;
Jones, Christopher D.;
Eastman, Joseph T.

Publication type:

Article

Estimating divergence times of notothenioid fishes using a fossil-calibrated molecular clock.

Published in:

Antarctic Science, 2004, v. 16, n. 1, p. 37, doi. 10.1017/S0954102004001798

By:

Near, Thomas J.

Publication type:

Article

Integrative ichthyological species delimitation in the Greenthroat Darter complex (Percidae: Etheostomatinae).

Published in:

Zoologica Scripta, 2021, v. 50, n. 6, p. 707, doi. 10.1111/zsc.12504

By:

MacGuigan, Daniel J.;
Hoagstrom, Christopher W.;
Domisch, Sami;
Hulsey, C. Darrin;
Near, Thomas J.

Publication type:

Article

Phylogenomic resolution of the monotypic and enigmatic Amarsipus, the Bagless Glassfish (Teleostei, Amarsipidae).

Published in:

Zoologica Scripta, 2021, v. 50, n. 4, p. 411, doi. 10.1111/zsc.12477

By:

Harrington, Richard C.;
Friedman, Matt;
Miya, Masaki;
Near, Thomas J.;
Campbell, Matthew A.

Publication type:

Article

Explicit tests of palaeodrainage connections of southeastern North America and the historical biogeography of Orangethroat Darters ( Percidae: Etheostoma: Ceasia).

Published in:

Molecular Ecology, 2013, v. 22, n. 21, p. 5397, doi. 10.1111/mec.12485

By:

Bossu, Christen M.;
Beaulieu, Jeremy M.;
Ceas, Patrick A.;
Near, Thomas J.

Publication type:

Article

A young clade repeating an old pattern: diversity in Nothonotus darters (Teleostei: Percidae) endemic to the Cumberland River B. P. KECK and T. J. NEAR MICROENDEMISM OF DARTER SPECIES IN THE CUMBERLAND RIVER.

Published in:

Molecular Ecology, 2010, v. 19, n. 22, p. 5030, doi. 10.1111/j.1365-294X.2010.04866.x

By:

Keck, Benjamin P.;
Near, Thomas J.

Publication type:

Article

Identification of non-native populations and reconstruction of invasion routes in the Redbreast Sunfish Lepomis auritus.

Published in:

Biological Invasions, 2024, v. 26, n. 4, p. 1241, doi. 10.1007/s10530-023-03241-x

By:

Kim, Daemin;
Simmons, Jeffrey W.;
Near, Thomas J.

Publication type:

Article

Recent diversification in an ancient lineage of Notothenioid fishes (Bovichtus: Notothenioidei).

Published in:

Polar Biology, 2019, v. 42, n. 5, p. 943, doi. 10.1007/s00300-019-02489-1

By:

Near, Thomas J.;
Ghezelayagh, Ava;
Ojeda, F. Patricio;
Dornburg, Alex

Publication type:

Article

Diversity, relative abundance, new locality records and population structure of Antarctic demersal fishes from the northern Scotia Arc islands and Bouvetøya.

Published in:

Polar Biology, 2008, v. 31, n. 12, p. 1481, doi. 10.1007/s00300-008-0489-x

By:

Jones, Christopher D.;
Anderson, M. Eric;
Balushkin, Arcady V.;
Duhamel, Guy;
Eakin, Richard R.;
Eastman, Joseph T.;
Kuhn, Kristen L.;
Lecointre, Guillaume;
Near, Thomas J.;
North, Anthony W.;
Stein, David L.;
Vacchi, Marino;
Detrich III, H. William

Publication type:

Article

Confirmation of neutral buoyancy in Aethotaxis mitopteryx DeWitt (Notothenioidei: Nototheniidae).

Published in:

Polar Biology, 2007, v. 30, n. 4, p. 443, doi. 10.1007/s00300-006-0201-y

By:

Near, Thomas J.;
Kendrick, B. Jacob;
Detrich III, H. William;
Jones, Christopher D.

Publication type:

Article

Ontogenetic shift in buoyancy and habitat in the Antarctic toothfish, Dissostichus mawsoni (Perciformes: Nototheniidae).

Published in:

Polar Biology, 2003, v. 26, n. 2, p. 124, doi. 10.1007/s00300-002-0459-7

By:

Near, Thomas J.;
Russo, Sabrina E.;
Jones, Christopher D.;
deVries, Arthur L.

Publication type:

Article

Dispersal, vicariance, and timing of diversification in Nothonotus darters.

Published in:

Molecular Ecology, 2005, v. 14, n. 11, p. 3485, doi. 10.1111/j.1365-294X.2005.02671.x

By:

Near, Thomas J.;
Keck, Benjamin P.

Publication type:

Article

Intraspecific phylogeography of Percina evides (Percidae: Etheostomatinae): an additional test of the Central Highlands pre-Pleistocene vicariance hypothesis.

Published in:

Molecular Ecology, 2001, v. 10, n. 9, p. 2235, doi. 10.1046/j.1365-294X.2001.01362.x

By:

Near, Thomas J.;
Page, Lawrence M.;
Mayden, Richard L.

Publication type:

Article

Considering Decoupled Phenotypic Diversification Between Ontogenetic Phases in Macroevolution: An Example Using Triggerfishes (Balistidae).

Published in:

Systematic Biology, 2024, v. 73, n. 2, p. 434, doi. 10.1093/sysbio/syae014

By:

Dornburg, Alex;
Zapfe, Katerina L;
Williams, Rachel;
Alfaro, Michael E;
Morris, Richard;
Adachi, Haruka;
Flores, Joseph;
Santini, Francesco;
Near, Thomas J;
Frédérich, Bruno

Publication type:

Article

Phylogenomics of the Ancient and Species-Depauperate Gars Tracks 150 Million Years of Continental Fragmentation in the Northern Hemisphere.

Published in:

Systematic Biology, 2023, v. 72, n. 1, p. 213, doi. 10.1093/sysbio/syac080

By:

Brownstein, Chase Doran;
Yang, Liandong;
Friedman, Matt;
Near, Thomas J

Publication type:

Article

Introgression and Species Delimitation in the Longear Sunfish Lepomis megalotis (Teleostei: Percomorpha: Centrarchidae).

Published in:

Systematic Biology, 2022, v. 71, n. 2, p. 273, doi. 10.1093/sysbio/syab029

By:

Kim, Daemin;
Bauer, Bruce H;
Near, Thomas J

Publication type:

Article

Phylogenomic Species Delimitation Dramatically Reduces Species Diversity in an Antarctic Adaptive Radiation.

Published in:

Systematic Biology, 2022, v. 71, n. 1, p. 58, doi. 10.1093/sysbio/syab057

By:

Parker, Elyse;
Dornburg, Alex;
Struthers, Carl D;
Jones, Christopher D;
Near, Thomas J

Publication type:

Article

Accelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishes.

Published in:

Systematic Biology, 2022, v. 71, n. 1, p. 78, doi. 10.1093/sysbio/syab040

By:

Melo, Bruno F;
Sidlauskas, Brian L;
Near, Thomas J;
Roxo, Fabio F;
Ghezelayagh, Ava;
Ochoa, Luz E;
Stiassny, Melanie L J;
Arroyave, Jairo;
Chang, Jonathan;
Faircloth, Brant C;
MacGuigan, Daniel J;
Harrington, Richard C;
Benine, Ricardo C;
Burns, Michael D;
Hoekzema, Kendra;
Sanches, Natalia C;
Maldonado-Ocampo, Javier A;
Castro, Ricardo M C;
Foresti, Fausto;
Alfaro, Michael E

Publication type:

Article

Phylogenomic Signatures of Ancient Introgression in a Rogue Lineage of Darters (Teleostei: Percidae).

Published in:

Systematic Biology, 2019, v. 68, n. 2, p. 329, doi. 10.1093/sysbio/syy074

By:

MacGuigan, Daniel J;
Near, Thomas J

Publication type:

Article

Phylogenomic Systematics of Ostariophysan Fishes: Ultraconserved Elements Support the Surprising Non-Monophyly of Characiformes.

Published in:

Systematic Biology, 2017, v. 66, n. 6, p. 881, doi. 10.1093/sysbio/syx038

By:

CHAKRABARTY, PROSANTA;
FAIRCLOTH, BRANT C.;
ALDA, FERNANDO;
LUDT, WILLIAM B.;
MCMAHAN, CALEB D.;
SORENSON, LAURIE;
NEAR, THOMAS J.;
DORNBURG, ALEX;
ALBERT, JAMES S.;
ARROYAVE, JAIRO;
STIASSNY, MELANIE L. J.;
ALFARO, MICHAEL E.

Publication type:

Article

The Evolution of Pharyngognathy: A Phylogenetic and Functional Appraisal of the Pharyngeal Jaw Key Innovation in Labroid Fishes and Beyond.

Published in:

Systematic Biology, 2012, v. 61, n. 6, p. 1001, doi. 10.1093/sysbio/sys060

By:

Wainwright, Peter C.;
Smith, W. Leo;
Price, Samantha A.;
Tang, Kevin L.;
Sparks, John S.;
Ferry, Lara A.;
Kuhn, Kristen L.;
Eytan, Ron I.;
Near, Thomas J.

Publication type:

Article

Phylogenetic and Coalescent Strategies of Species Delimitation in Snubnose Darters (Percidae: Etheostoma).

Published in:

Systematic Biology, 2012, v. 61, n. 1, p. 63, doi. 10.1093/sysbio/syr077

By:

Harrington, Richard C.;
Near, Thomas J.

Publication type:

Article

Phylogeny and Temporal Diversification of Darters (Percidae: Etheostomatinae).

Published in:

Systematic Biology, 2011, v. 60, n. 5, p. 565, doi. 10.1093/sysbio/syr052

By:

Near, Thomas J.;
Bossu, Christen M.;
Bradburd, Gideon S.;
Carlson, Rose L.;
Harrington, Richard C.;
Hollingsworth, Phillip R.;
Keck, Benjamin P.;
Etnier, David A.

Publication type:

Article