Works by Nasir, Arshan

Results: 35

Untangling the origin of viruses and their impact on cellular evolution.

Published in:

Annals of the New York Academy of Sciences, 2015, v. 1341, n. 1, p. 61, doi. 10.1111/nyas.12735

By:

Nasir, Arshan;
Sun, Feng‐Jie;
Kim, Kyung Mo;
Caetano‐Anollés, Gustavo

Publication type:

Article

Asgard archaea do not close the debate about the universal tree of life topology.

Published in:

PLoS Genetics, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pgen.1007215

By:

Da Cunha, Violette;
Gaia, Morgan;
Nasir, Arshan;
Forterre, Patrick

Publication type:

Article

Testing Empirical Support for Evolutionary Models that Root the Tree of Life.

Published in:

Journal of Molecular Evolution, 2019, v. 87, n. 2/3, p. 131, doi. 10.1007/s00239-019-09891-7

By:

Caetano-Anollés, Derek;
Nasir, Arshan;
Kim, Kyung Mo;
Caetano-Anollés, Gustavo

Publication type:

Article

A Tree of Cellular Life Inferred from a Genomic Census of Molecular Functions.

Published in:

Journal of Molecular Evolution, 2014, v. 79, n. 5/6, p. 240, doi. 10.1007/s00239-014-9637-9

By:

Kim, Kyung;
Nasir, Arshan;
Hwang, Kyuin;
Caetano-Anollés, Gustavo

Publication type:

Article

The tree of life describes a tripartite cellular world.

Published in:

BioEssays, 2021, v. 43, n. 6, p. 1, doi. 10.1002/bies.202000343

By:

Nasir, Arshan;
Mughal, Fizza;
Caetano‐Anollés, Gustavo

Publication type:

Article

Bacterial Origin and Reductive Evolution of the CPR Group.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 3, p. 103, doi. 10.1093/gbe/evaa024

By:

Bokhari, Rijja Hussain;
Amirjan, Nooreen;
Jeong, Hyeonsoo;
Kim, Kyung Mo;
Caetano-Anollés, Gustavo;
Nasir, Arshan

Publication type:

Article

Gut microbial ecology and exposome of a healthy Pakistani cohort.

Published in:

Gut Pathogens, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13099-024-00596-x

By:

Gul, Farzana;
Herrema, Hilde;
Davids, Mark;
Keating, Ciara;
Nasir, Arshan;
Ijaz, Umer Zeeshan;
Javed, Sundus

Publication type:

Article

Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya.

Published in:

BMC Evolutionary Biology, 2012, v. 12, n. 1, p. 1, doi. 10.1186/1471-2148-12-156

By:

Nasir, Arshan;
Kyung Mo Kim;
Caetano-Anolles, Gustavo

Publication type:

Article

Global Patterns of Protein Domain Gain and Loss in Superkingdoms.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.pcbi.1003452

By:

Nasir, Arshan;
Kim, Kyung Mo;
Caetano-Anollés, Gustavo

Publication type:

Article

The origin and evolution of viruses inferred from fold family structure.

Published in:

Archives of Virology, 2020, v. 165, n. 10, p. 2177, doi. 10.1007/s00705-020-04724-1

By:

Mughal, Fizza;
Nasir, Arshan;
Caetano-Anollés, Gustavo

Publication type:

Article

Editorial: Viruses, genetic exchange, and the tree of life, volume II.

Published in:

Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1271181

By:

Nasir, Arshan;
Caetano-Anollés, Gustavo;
Claverie, Jean-Michel

Publication type:

Article

A critical analysis of the current state of virus taxonomy.

Published in:

Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1240993

By:

Caetano-Anollés, Gustavo;
Claverie, Jean-Michel;
Nasir, Arshan

Publication type:

Article

CLUSTOM-CLOUD: In-Memory Data Grid-Based Software for Clustering 16S rRNA Sequence Data in the Cloud Environment.

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0151064

By:

Oh, Jeongsu;
Choi, Chi-Hwan;
Park, Min-Kyu;
Kim, Byung Kwon;
Hwang, Kyuin;
Lee, Sang-Heon;
Hong, Soon Gyu;
Nasir, Arshan;
Cho, Wan-Sup;
Kim, Kyung Mo

Publication type:

Article

Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions.

Published in:

Evolutionary Bioinformatics, 2018, n. 14, p. 1, doi. 10.1177/1176934318805101

By:

Caetano-Anollés, Gustavo;
Nasir, Arshan;
Kim, Kyung Mo;
Caetano-Anollés, Derek

Publication type:

Article

Interim Report of the Reactogenicity and Immunogenicity of Severe Acute Respiratory Syndrome Coronavirus 2 XBB–Containing Vaccines.

Published in:

Journal of Infectious Diseases, 2024, v. 230, n. 2, p. e279, doi. 10.1093/infdis/jiae067

By:

Chalkias, Spyros;
McGhee, Nichole;
Whatley, Jordan L;
Essink, Brandon;
Brosz, Adam;
Tomassini, Joanne E;
Girard, Bethany;
Edwards, Darin K;
Wu, Kai;
Nasir, Arshan;
Lee, Diana;
Avena, Laura E;
Feng, Jing;
Deng, Weiping;
Montefiori, David C;
Baden, Lindsey R;
Miller, Jacqueline M;
Das, Rituparna

Publication type:

Article

Identification of Capsid/Coat Related Protein Folds and Their Utility for Virus Classification.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00380

By:

Nasir, Arshan;
Caetano-Anollés, Gustavo

Publication type:

Article

Initial Sequencing and Characterization of the Gastrointestinal and Oral Microbiota in Urban Pakistani Adults.

Published in:

Frontiers in Cellular & Infection Microbiology, 2020, v. 10, p. N.PAG, doi. 10.3389/fcimb.2020.00409

By:

Batool, Maria;
Ali, Syed Baqir;
Jaan, Ali;
Khalid, Kehkishan;
Ali, Syeda Aba;
Kamal, Kaynat;
Raja, Afraz Ahmed;
Gul, Farzana;
Nasir, Arshan

Publication type:

Article

Long-term evolution of viruses: A Janus-faced balance.

Published in:

BioEssays, 2017, v. 39, n. 8, p. n/a, doi. 10.1002/bies.201700026

By:

Nasir, Arshan;
Kim, Kyung Mo;
Caetano‐Anollés, Gustavo

Publication type:

Article

Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes.

Published in:

PLoS Genetics, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pgen.1006810

By:

Da Cunha, Violette;
Gaia, Morgan;
Gadelle, Daniele;
Nasir, Arshan;
Forterre, Patrick

Publication type:

Article

Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-42227-5

By:

Jeong, Hyeonsoo;
Arif, Bushra;
Caetano-Anollés, Gustavo;
Kim, Kyung Mo;
Nasir, Arshan

Publication type:

Article

Phylogenetic Tracings of Proteome Size Support the Gradual Accretion of Protein Structural Domains and the Early Origin of Viruses from Primordial Cells.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01178

By:

Nasir, Arshan;
kyung Mo Kim;
Caetano-Anollés, Gustavo

Publication type:

Article

An mpox virus mRNA-lipid nanoparticle vaccine confers protection against lethal orthopoxviral challenge.

Published in:

Science Translational Medicine, 2023, v. 15, n. 716, p. 1, doi. 10.1126/scitranslmed.adg3540

By:

Freyn, Alec W.;
Atyeo, Caroline;
Earl, Patricia L.;
Americo, Jeffrey L.;
Chuang, Gwo-Yu;
Natarajan, Harini;
Frey, Tiffany R.;
Gall, Jason G.;
Moliva, Juan I.;
Hunegnaw, Ruth;
Asthagiri Arunkumar, Guha;
Ogega, Clinton O.;
Nasir, Arshan;
Santos, Genesis;
Levin, Rafael H.;
Meni, Anusha;
Jorquera, Patricia A.;
Bennett, Hamilton;
Johnson, Joshua A.;
Durney, Michael A.

Publication type:

Article

Arguments Reinforcing the Three-Domain View of Diversified Cellular Life.

Published in:

Archaea, 2016, p. 1, doi. 10.1155/2016/1851865

By:

Nasir, Arshan;
Kim, Kyung Mo;
Da Cunha, Violette;
Caetano-Anollés, Gustavo

Publication type:

Article

Comparative Analysis of Proteomes and Functionomes Provides Insights into Origins of Cellular Diversification.

Published in:

Archaea, 2013, p. 1, doi. 10.1155/2013/648746

By:

Nasir, Arshan;
Caetano-Anollés, Gustavo

Publication type:

Article

A Phylogenomic Census of Molecular Functions Identifies Modern Thermophilic Archaea as the Most Ancient Form of Cellular Life.

Published in:

Archaea, 2014, p. 1, doi. 10.1155/2014/706468

By:

Nasir, Arshan;
Kyung Mo Kim;
Caetano-Anollés, Gustavo

Publication type:

Article

Archaea: The First Domain of Diversified Life.

Published in:

Archaea, 2014, p. 1, doi. 10.1155/2014/590214

By:

Caetano-Anollés, Gustavo;
Nasir, Arshan;
Zhou, Kaiyue;
Caetano-Anollés, Derek;
Mittenthal, Jay E.;
Feng-Jie Sun;
Kyung Mo Kim

Publication type:

Article

Characterization of the Gastrointestinal and Reproductive Tract Microbiota in Fertile and Infertile Pakistani Couples.

Published in:

Biology (2079-7737), 2022, v. 11, n. 1, p. 40, doi. 10.3390/biology11010040

By:

Manzoor, Ammara;
Amir, Saira;
Gul, Farzana;
Sidique, Muhammad Abubakar;
Kayani, Masood ur Rehman;
Zaidi, Syed Shujaat Ali;
Javed, Sundus;
Abbas Shah, Syed Tahir;
Nasir, Arshan

Publication type:

Article

Editorial: Viruses, Genetic Exchange, and the Tree of Life.

Published in:

2019

By:

Nasir, Arshan;
Caetano-Anollés, Gustavo;
Claverie, Jean-Michel

Publication type:

Editorial

Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02668

By:

Colson, Philippe;
Levasseur, Anthony;
La Scola, Bernard;
Sharma, Vikas;
Nasir, Arshan;
Pontarotti, Pierre;
Caetano-Anollés, Gustavo;
Raoult, Didier

Publication type:

Article

A Preliminary List of Horizontally Transferred Genes in Prokaryotes Determined by Tree Reconstruction and Reconciliation.

Published in:

Frontiers in Genetics, 2017, p. 1, doi. 10.3389/fgene.2017.00112

By:

Hyeonsoo Jeong;
Nasir, Arshan

Publication type:

Article

HGTree: database of horizontally transferred genes determined by tree reconciliation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D610, doi. 10.1093/nar/gkv1245

By:

Hyeonsoo Jeong;
Samsun Sung;
Taehyung Kwon;
Minseok Seo;
Caetano-Anollés, Kelsey;
Sang Ho Choi;
Seoae Cho;
Nasir, Arshan;
Kim, Heebal

Publication type:

Article

A Cross-Sectional Study of Potential Antimicrobial Resistance and Ecology in Gastrointestinal and Oral Microbial Communities of Young Normoweight Pakistani Individuals.

Published in:

Microorganisms, 2023, v. 11, n. 2, p. 279, doi. 10.3390/microorganisms11020279

By:

Batool, Maria;
Keating, Ciara;
Javed, Sundus;
Nasir, Arshan;
Muddassar, Muhammad;
Ijaz, Umer Zeeshan

Publication type:

Article

Large Evolutionary Rate Heterogeneity among and within HIV-1 Subtypes and CRFs.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 9, p. 1689, doi. 10.3390/v13091689

By:

Nasir, Arshan;
Dimitrijevic, Mira;
Romero-Severson, Ethan;
Leitner, Thomas

Publication type:

Article

What Should Health Departments Do with HIV Sequence Data?

Published in:

Viruses (1999-4915), 2020, v. 12, n. 9, p. 1018, doi. 10.3390/v12091018

By:

Romero-Severson, Ethan;
Nasir, Arshan;
Leitner, Thomas

Publication type:

Article

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.

Published in:

Genes, 2011, v. 2, n. 4, p. 869, doi. 10.3390/genes2040869

By:

Nasir, Arshan;
Naeem, Aisha;
Khan, Muhammad Jawad;
Lopez-Nicora, Horacio D.;
Caetano-Anollés, Gustavo

Publication type:

Article