Works by Nakao, Mitsuteru

Results: 16

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-6

By:

Katayama, Toshiaki;
Wilkinson, Mark D.;
Micklem, Gos;
Kawashima, Shuichi;
Yamaguchi, Atsuko;
Nakao, Mitsuteru;
Yamamoto, Yasunori;
Okamoto, Shinobu;
Oouchida, Kenta;
Hong-Woo Chun;
Aerts, Jan;
Afzal, Hammad;
Antezana, Erick;
Arakawa, Kazuharu;
Aranda, Bruno;
Belleau, Francois;
Bolleman, Jerven;
Bonnal, Raoul J. P.;
Chapman, Brad;
Cock, Peter J. A.

Publication type:

Article

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.

Published in:

Journal of Biomedical Semantics, 2010, v. 1, n. 1, p. 1, doi. 10.1186/2041-1480-1-8

By:

Katayama, Toshiaki;
Arakawa, Kazuharu;
Nakao, Mitsuteru;
Ono, Keiichiro;
Aoki-Kinoshita, Kiyoko F.;
Yamamoto, Yasunori;
Yamaguchi, Atsuko;
Kawashima, Shuichi;
Chun, Hong-Woo;
Aerts, Jan;
Aranda, Bruno;
Barboza, Lord Hendrix;
Bonnal, Raoul J. P.;
Bruskiewich, Richard;
Bryne, Jan C.;
Fernández, José M.;
Funahashi, Akira;
Gordon, Paul M. K.;
Goto, Naohisa;
Groscurth, Andreas

Publication type:

Article

TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W706, doi. 10.1093/nar/gkq386

By:

Katayama, Toshiaki;
Nakao, Mitsuteru;
Takagi, Toshihisa

Publication type:

Article

CyanoBase: the cyanobacteria genome database update 2010.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D379, doi. 10.1093/nar/gkp915

By:

Mitsuteru Nakao;
Shinobu Okamoto;
Mitsuyo Kohara;
Tsunakazu Fujishiro;
Takatomo Fujisawa;
Shusei Sato;
Satoshi Tabata;
Takakazu Kaneko;
Yasukazu Nakamura

Publication type:

Article

Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 20, p. 6386, doi. 10.1093/nar/gkn677

By:

Takeda, Jun-ichi;
Suzuki, Yutaka;
Sakate, Ryuichi;
Sato, Yoshiharu;
Seki, Masahide;
Irie, Takuma;
Takeuchi, Nono;
Ueda, Takuya;
Nakao, Mitsuteru;
Sugano, Sumio;
Gojobori, Takashi;
Imanishi, Tadashi

Publication type:

Article

H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational.

Published in:

Nucleic Acids Research, 2007, v. 35, p. d104, doi. 10.1093/nar/gkl854

By:

Takeda, Jun-ichi;
Suzuki, Yutaka;
Nakao, Mitsuteru;
Kuroda, Tsuyoshi;
Sugano, Sumio;
Gojobori, Takashi;
Imanishi, Tadashi

Publication type:

Article

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 14, p. 3917, doi. 10.1093/nar/gkl507

By:

Takeda, Jun-ichi;
Suzuki, Yutaka;
Nakao, Mitsuteru;
Barrero, Roberto A.;
Koyanagi, Kanako O.;
Jin, Lihua;
Motono, Chie;
Hata, Hiroko;
Isogai, Takao;
Nagai, Keiichi;
Otsuki, Tetsuji;
Kuryshev, Vladimir;
Shionyu, Masafumi;
Yura, Kei;
Go, Mitiko;
Thierry-Mieg, Jean;
Thierry-Mieg, Danielle;
Wiemann, Stefan;
Nomura, Nobuo;
Sugano, Sumio

Publication type:

Article

Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2355, doi. 10.1093/nar/gki520

By:

Nakao, Mitsuteru;
Barrero, Roberto A.;
Mukai, Yuri;
Motono, Chie;
Suwa, Makiko;
Nakai, Kenta

Publication type:

Article

DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d75

By:

Makita, Yuko;
Nakao, Mitsuteru;
Ogasawara, Naotake;
Nakai, Kenta

Publication type:

Article

Cluster analysis of genome-wide expression profiles to predict gene functions with KEGG.

Published in:

1999

By:

Bono, Hidemasa;
Nakao, Mitsuteru;
Kanehisa, Minoru

Publication type:

Abstract

Modeling and predicting transcriptional units of Escherichia coligenes using hidden Markov models.

Published in:

Bioinformatics, 1999, v. 15, n. 12, p. 987, doi. 10.1093/bioinformatics/15.12.987

By:

Yada, Tetsushi;
Nakao, Mitsuteru;
Totoki, Yasushi;
Nakai, Kenta

Publication type:

Article

BioRuby: bioinformatics software for the Ruby programming language.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2617, doi. 10.1093/bioinformatics/btq475

By:

Goto, Naohisa;
Prins, Pjotr;
Nakao, Mitsuteru;
Bonnal, Raoul;
Aerts, Jan;
Katayama, Toshiaki

Publication type:

Article

Implementation of linked data in the life sciences at BioHackathon 2011.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/2041-1480-6-3

By:

Aoki-Kinoshita, Kiyoko F.;
Kinjo, Akira R.;
Mizuki Morita;
Yoshinobu Igarashi;
Yi-an Chen;
Yasumasa Shigemoto;
Takatomo Fujisawa;
Yukie Akune;
Takeo Katoda;
Anna Kokubu;
Takaaki Mori;
Mitsuteru Nakao;
Shuichi Kawashima;
Shinobu Okamoto;
Toshiaki Katayama;
Soichi Ogishima

Publication type:

Article

Implementation of linked data in the life sciences at BioHackathon 2011.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 38, doi. 10.1186/2041-1480-6-3

By:

Aoki-Kinoshita, Kiyoko F.;
Kinjo, Akira R.;
Mizuki Morita;
Yoshinobu Igarashi;
Yi-an Chen;
Yasumasa Shigemoto;
Takatomo Fujisawa;
Yukie Akune;
Takeo Katoda;
Anna Kokubu;
Takaaki Mori;
Mitsuteru Nakao;
Shuichi Kawashima;
Shinobu Okamoto;
Toshiaki Katayama;
Soichi Ogishima

Publication type:

Article

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D666, doi. 10.1093/nar/gkt1145

By:

Fujisawa, Takatomo;
Okamoto, Shinobu;
Katayama, Toshiaki;
Nakao, Mitsuteru;
Yoshimura, Hidehisa;
Kajiya-Kanegae, Hiromi;
Yamamoto, Sumiko;
Yano, Chiyoko;
Yanaka, Yuka;
Maita, Hiroko;
Kaneko, Takakazu;
Tabata, Satoshi;
Nakamura, Yasukazu

Publication type:

Article

Genome Structure of the Legume, Lotus japonicus.

Published in:

DNA Research, 2008, v. 15, n. 4, p. 227, doi. 10.1093/dnares/dsn008

By:

Sato, Shusei;
Nakamura, Yasukazu;
Kaneko, Takakazu;
Asamizu, Erika;
Kato, Tomohiko;
Nakao, Mitsuteru;
Sasamoto, Shigemi;
Watanabe, Akiko;
Ono, Akiko;
Kawashima, Kumiko;
Fujishiro, Tsunakazu;
Katoh, Midori;
Kohara, Mitsuyo;
Kishida, Yoshie;
Minami, Chiharu;
Nakayama, Shinobu;
Nakazaki, Naomi;
Shimizu, Yoshimi;
Shinpo, Sayaka;
Takahashi, Chika

Publication type:

Article