Works by Nagae, Masamichi

Results: 31

Analysis of protein landscapes around N-glycosylation sites from the PDB repository for understanding the structural basis of N-glycoprotein processing and maturation.

Published in:

Glycobiology, 2018, v. 28, n. 10, p. 774, doi. 10.1093/glycob/cwy059

By:

Suga, Akitsugu;
Nagae, Masamichi;
Yamaguchi, Yoshiki

Publication type:

Article

Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa.

Published in:

Glycobiology, 2017, v. 27, n. 12, p. 1120, doi. 10.1093/glycob/cwx081

By:

Masamichi Nagae;
Mishra, Sushil K.;
Shinya Hanashima;
Hiroaki Tateno;
Yoshiki Yamaguchi

Publication type:

Article

Structural change of N-glycan exposes hydrophobic surface of human transferrin.

Published in:

Glycobiology, 2014, v. 24, n. 8, p. 693, doi. 10.1093/glycob/cwu033

By:

Nagae, Masamichi;
Morita-Matsumoto, Kana;
Arai, Seisuke;
Wada, Ikuo;
Matsumoto, Yuka;
Saito, Kiyoshi;
Hashimoto, Yasuhiro;
Yamaguchi, Yoshiki

Publication type:

Article

Phytohemagglutinin from Phaseolus vulgaris (PHA-E) displays a novel glycan recognition mode using a common legume lectin fold.

Published in:

Glycobiology, 2014, v. 24, n. 4, p. 368, doi. 10.1093/glycob/cwu004

By:

Nagae, Masamichi;
Soga, Keisuke;
Morita-Matsumoto, Kana;
Hanashima, Shinya;
Ikeda, Akemi;
Yamamoto, Kazuo;
Yamaguchi, Yoshiki

Publication type:

Article

Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain.

Published in:

Glycobiology, 2009, v. 19, n. 2, p. 112

By:

Masamichi Nagae;
Nozomu Nishi;
Takeomi Murata;
Taichi Usui;
Takanori Nakamura;
Soichi Wakatsuki;
Ryuichi Kato

Publication type:

Article

3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.

Published in:

Genes to Cells, 2017, v. 22, n. 4, p. 348, doi. 10.1111/gtc.12480

By:

Nagae, Masamichi;
Mishra, Sushil K.;
Neyazaki, Makiko;
Oi, Rika;
Ikeda, Akemi;
Matsugaki, Naohiro;
Akashi, Satoko;
Manya, Hiroshi;
Mizuno, Mamoru;
Yagi, Hirokazu;
Kato, Koichi;
Senda, Toshiya;
Endo, Tamao;
Nogi, Terukazu;
Yamaguchi, Yoshiki

Publication type:

Article

The cancer‐associated glycosyltransferase GnT‐V (MGAT5) recognizes the N‐glycan core via residues outside its catalytic pocket.

Published in:

FEBS Letters, 2023, v. 597, n. 24, p. 3102, doi. 10.1002/1873-3468.14775

By:

Osuka, Reina F.;
Nagae, Masamichi;
Ohuchi, Akito;
Ohno, Shiho;
Yamaguchi, Yoshiki;
Kizuka, Yasuhiko

Publication type:

Article

Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan.

Published in:

FEBS Letters, 2016, v. 590, n. 10, p. 1552, doi. 10.1002/1873-3468.12206

By:

Nagae, Masamichi;
Ikeda, Akemi;
Hanashima, Shinya;
Kojima, Takumi;
Matsumoto, Naoki;
Yamamoto, Kazuo;
Yamaguchi, Yoshiki

Publication type:

Article

Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan.

Published in:

FEBS Letters, 2016, v. 590, n. 8, p. 1280, doi. 10.1002/1873-3468.12162

By:

Nagae, Masamichi;
Ikeda, Akemi;
Hanashima, Shinya;
Kojima, Takumi;
Matsumoto, Naoki;
Yamamoto, Kazuo;
Yamaguchi, Yoshiki

Publication type:

Article

Crystal structure of the complex of CLEC12A and an antibody that interferes with binding of diverse ligands.

Published in:

International Immunology, 2024, v. 36, n. 6, p. 279, doi. 10.1093/intimm/dxae006

By:

Mori, Shotaro;
Nagae, Masamichi;
Yamasaki, Sho

Publication type:

Article

Differential Labeling of Glycoproteins with Alkynyl Fucose Analogs.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 17, p. 6007, doi. 10.3390/ijms21176007

By:

Ma, Chenyu;
Takeuchi, Hideyuki;
Hao, Huilin;
Yonekawa, Chizuko;
Nakajima, Kazuki;
Nagae, Masamichi;
Okajima, Tetsuya;
Haltiwanger, Robert S.;
Kizuka, Yasuhiko

Publication type:

Article

3D Structure and Function of Glycosyltransferases Involved in N-glycan Maturation.

Published in:

2020

By:

Masamichi Nagae;
Yoshiki Yamaguchi;
Naoyuki Taniguchi;
Yasuhiko Kizuka

Publication type:

Literature Review

Three-Dimensional Structural Aspects of Protein-Polysaccharide Interactions.

Published in:

International Journal of Molecular Sciences, 2014, v. 15, n. 3, p. 3768, doi. 10.3390/ijms15033768

By:

Masamichi Nagae;
Yoshiki Yamaguchi

Publication type:

Article

Function and 3D Structure of the N-Glycans on Glycoproteins.

Published in:

International Journal of Molecular Sciences, 2012, v. 13, n. 7, p. 8398, doi. 10.3390/ijms13078398

By:

Nagae, Masamichi;
Yamaguchi, Yoshiki

Publication type:

Article

Discovery of a lectin domain that regulates enzyme activity in mouse N-acetylglucosaminyltransferase-IVa (MGAT4A).

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03661-w

By:

Nagae, Masamichi;
Hirata, Tetsuya;
Tateno, Hiroaki;
Mishra, Sushil K.;
Manabe, Noriyoshi;
Osada, Naoko;
Tokoro, Yuko;
Yamaguchi, Yoshiki;
Doerksen, Robert J.;
Shimizu, Toshiyuki;
Kizuka, Yasuhiko

Publication type:

Article

Symbiotic bacteria-dependent expansion of MR1-reactive T cells causes autoimmunity in the absence of Bcl11b.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34802-8

By:

Shibata, Kensuke;
Motozono, Chihiro;
Nagae, Masamichi;
Shimizu, Takashi;
Ishikawa, Eri;
Motooka, Daisuke;
Okuzaki, Daisuke;
Izumi, Yoshihiro;
Takahashi, Masatomo;
Fujimori, Nao;
Wing, James B.;
Hayano, Takahide;
Asai, Yoshiyuki;
Bamba, Takeshi;
Ogawa, Yoshihiro;
Furutani-Seiki, Makoto;
Shirai, Mutsunori;
Yamasaki, Sho

Publication type:

Article

Novel affinity tag system using structurally defined antibody-tag interaction: Application to single-step protein purification.

Published in:

Protein Science: A Publication of the Protein Society, 2008, v. 17, n. 12, p. 2120, doi. 10.1110/ps.038299.108

By:

Nogi, Terukazu;
Sangawa, Takeshi;
Tabata, Sanae;
Nagae, Masamichi;
Tamura-Kawakami, Keiko;
Beppu, Ayako;
Hattori, Mitsuharu;
Yasui, Norihisa;
Takagi, Junichi

Publication type:

Article

Commentary on 'Structural insights into a bacterial β-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: towards the understanding of the aglycone recognition mechanism by the C-terminal lid domain'.

Published in:

Journal of Biochemistry, 2025, v. 177, n. 3, p. 199, doi. 10.1093/jb/mvae094

By:

Nagae, Masamichi

Publication type:

Article

Structural studies of reelin N-terminal region provides insights into a unique structural arrangement and functional multimerization.

Published in:

Journal of Biochemistry, 2021, v. 169, n. 5, p. 555, doi. 10.1093/jb/mvaa144

By:

Nagae, Masamichi;
Suzuki, Kei;
Yasui, Norihisa;
Nogi, Terukazu;
Kohno, Takao;
Hattori, Mitsuharu;
Takagi, Junichi

Publication type:

Article

In situ visualization of a glycoform of transferrin: localization of α2,6-sialylated transferrin in the liver.

Published in:

Journal of Biochemistry, 2015, v. 157, n. 4, p. 211, doi. 10.1093/jb/mvu071

By:

Yuka Matsumoto;
Toshie Saito;
Kyoka Hoshi;
Hiromi Ito;
Yoshinobu Kariya;
Masamichi Nagae;
Yoshiki Yamaguchi;
Yoshiaki Hagiwara;
Noriaki Kinoshita;
Ikuo Wada;
Kiyoshi Saito;
Takashi Honda;
Yasuhiro Hashimoto

Publication type:

Article

Lectin-dependent inhibition of antigen–antibody reaction: application for measuring α2,6-sialylated glycoforms of transferrin.

Published in:

Journal of Biochemistry, 2013, v. 154, n. 3, p. 229, doi. 10.1093/jb/mvt065

By:

Hoshi, Kyoka;
Kariya, Yoshinobu;
Nara, Kiyomitsu;
Ito, Hiromi;
Matsumoto, Kana;
Nagae, Masamichi;
Yamaguchi, Yoshiki;
Nakajima, Madoka;
Miyajima, Masakazu;
Arai, Hajime;
Kuno, Atsushi;
Narimatsu, Hisashi;
Shirotani, Keiro;
Hashimoto, Yasuhiro

Publication type:

Article

1,2-α-l-Fucosynthase: A glycosynthase derived from an inverting α-glycosidase with an unusual reaction mechanism

Published in:

FEBS Letters, 2008, v. 582, n. 27, p. 3739, doi. 10.1016/j.febslet.2008.09.054

By:

Wada, Jun;
Honda, Yuji;
Nagae, Masamichi;
Kato, Ryuichi;
Wakatsuki, Soichi;
Katayama, Takane;
Taniguchi, Hajime;
Kumagai, Hidehiko;
Kitaoka, Motomitsu;
Yamamoto, Kenji

Publication type:

Article

Crystallographic analysis of murine p24γ2 Golgi dynamics domain.

Published in:

Proteins, 2017, v. 85, n. 4, p. 764, doi. 10.1002/prot.25242

By:

Nagae, Masamichi;
Liebschner, Dorothee;
Yamada, Yusuke;
Morita‐Matsumoto, Kana;
Matsugaki, Naohiro;
Senda, Toshiya;
Fujita, Morihisa;
Kinoshita, Taroh;
Yamaguchi, Yoshiki

Publication type:

Article

Crystal structures of carbohydrate recognition domain of blood dendritic cell antigen-2 (BDCA2) reveal a common domain-swapped dimer.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1512, doi. 10.1002/prot.24504

By:

Nagae, Masamichi;
Ikeda, Akemi;
Kitago, Yu;
Matsumoto, Naoki;
Yamamoto, Kazuo;
Yamaguchi, Yoshiki

Publication type:

Article

Crystal structure of α5β1 integrin ectodomain: Atomic details of the fibronectin receptor.

Published in:

Journal of Cell Biology, 2012, v. 197, n. 1, p. 131, doi. 10.1083/jcb.201111077

By:

Nagae, Masamichi;
Re, Suyong;
Mihara, Emiko;
Nogi, Terukazu;
Sugita, Yuji;
Takagi, Junichi

Publication type:

Article

Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05931-w

By:

Nagae, Masamichi;
Kizuka, Yasuhiko;
Mihara, Emiko;
Kitago, Yu;
Hanashima, Shinya;
Ito, Yukishige;
Takagi, Junichi;
Taniguchi, Naoyuki;
Yamaguchi, Yoshiki

Publication type:

Article

Sulfated bile acid is a host-derived ligand for MAIT cells.

Published in:

Science Immunology, 2024, v. 9, n. 91, p. 1, doi. 10.1126/sciimmunol.ade6924

By:

Ito, Emi;
Inuki, Shinsuke;
Izumi, Yoshihiro;
Takahashi, Masatomo;
Dambayashi, Yuki;
Ciacchi, Lisa;
Awad, Wael;
Takeyama, Ami;
Shibata, Kensuke;
Mori, Shotaro;
Mak, Jeffrey Y. W.;
Fairlie, David P.;
Bamba, Takeshi;
Ishikawa, Eri;
Nagae, Masamichi;
Rossjohn, Jamie;
Yamasaki, Sho

Publication type:

Article

Human Dectin-1 is O-glycosylated and serves as a ligand for C-type lectin receptor CLEC-2.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.83037

By:

Shojiro Haji;
Taiki Ito;
Guenther, Carla;
Miyako Nakano;
Takashi Shimizu;
Mori, Daiki;
Yasunori Chiba;
Masato Tanaka;
Mishra, Sushil K.;
Willment, Janet A.;
Brown, Gordon D.;
Nagae, Masamichi;
Sho Yamasaki

Publication type:

Article

Structural basis for amyloidogenic peptide recognition by sorLA.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 3, p. 199, doi. 10.1038/nsmb.2954

By:

Kitago, Yu;
Nagae, Masamichi;
Nakata, Zenzaburo;
Yagi-Utsumi, Maho;
Takagi-Niidome, Shizuka;
Mihara, Emiko;
Nogi, Terukazu;
Kato, Koichi;
Takagi, Junichi

Publication type:

Article

Phylogenetic and structural insights into the origin of C-type lectin Mincle in vertebrates.

Published in:

Immunogenetics, 2025, v. 77, n. 1, p. 1, doi. 10.1007/s00251-025-01375-x

By:

Ito, Taiki;
Guenther, Carla;
Ishikawa, Eri;
Yabuki, Takae;
Nagae, Masamichi;
Nakatani, Yoichiro;
Yamasaki, Sho

Publication type:

Article

Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins.

Published in:

Scientific Reports, 2016, p. 22973, doi. 10.1038/srep22973

By:

Nagae, Masamichi;
Kanagawa, Mayumi;
Morita-Matsumoto, Kana;
Hanashima, Shinya;
Kizuka, Yasuhiko;
Taniguchi, Naoyuki;
Yamaguchi, Yoshiki

Publication type:

Article