Works by Nadaf, Javad

Results: 27

ExomeAI: detection of recurrent allelic imbalance in tumors using whole-exome sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 429, doi. 10.1093/bioinformatics/btu665

By:

Nadaf, Javad;
Majewski, Jacek;
Fahiminiya, Somayyeh

Publication type:

Article

Germline and somatic SMARCA4 mutations characterize small cell carcinoma of the ovary, hypercalcemic type.

Published in:

Nature Genetics, 2014, v. 46, n. 5, p. 438, doi. 10.1038/ng.2931

By:

Witkowski, Leora;
Carrot-Zhang, Jian;
Albrecht, Steffen;
Fahiminiya, Somayyeh;
Hamel, Nancy;
Tomiak, Eva;
Grynspan, David;
Saloustros, Emmanouil;
Nadaf, Javad;
Rivera, Barbara;
Gilpin, Catherine;
Castellsagué, Ester;
Silva-Smith, Rachel;
Plourde, François;
Wu, Mona;
Saskin, Avi;
Arseneault, Madeleine;
Karabakhtsian, Rouzan G;
Reilly, Elizabeth A;
Ueland, Frederick R

Publication type:

Article

Detection of a Cis eQTL Controlling BMCO1 Gene Expression Leads to the Identification of a QTG for Chicken Breast Meat Color.

Published in:

PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0014825

By:

Bihan-Duval, Elisabeth Le;
Nadaf, Javad;
Berri, Cécile;
Pitel, Frédérique;
Graulet, Benoît;
Godet, Estelle;
Leroux, Sophie Y.;
Demeure, Olivier;
Lagarrigue, Sandrine;
Duby, Cécile;
Cogburn, Larry A.;
Beaumont, Catherine M.;
Duclos, Michel J.

Publication type:

Article

Infantile onset encephalomyopathy, retinopathy, optic atrophy, and mitochondrial DNA depletion associated with a novel pathogenic DHX16 variant.

Published in:

Clinical Genetics, 2023, v. 104, n. 6, p. 686, doi. 10.1111/cge.14416

By:

Hautakangas, Milla‐Riikka;
Widgren, Paula;
Korpelainen, Paavo;
Kangas, Salla M.;
Komulainen, Tuomas;
Vieira, Päivi;
Rahikkala, Elisa;
Pylkäs, Katri;
Tuominen, Hannu;
Kokkonen, Hannaleena;
Miinalainen, Ilkka;
Nadaf, Javad;
Majewski, Jacek;
Hinttala, Reetta;
Uusimaa, Johanna

Publication type:

Article

Duplication 2p16 is associated with perisylvian polymicrogyria.

Published in:

American Journal of Medical Genetics. Part A, 2019, v. 179, n. 12, p. 2343, doi. 10.1002/ajmg.a.61342

By:

Amrom, Dina;
Poduri, Annapurna;
Goldman, Jennifer S.;
Dan3, Bernard;
Deconinck3, Nicolas;
Pichon, Bruno;
Nadaf, Javad;
Andermann, Frederick;
Andermann, Eva;
Walsh, Christopher A.;
Dobyns, William B.

Publication type:

Article

An Expression QTL of Closely Linked Candidate Genes Affects pH of Meat in Chickens.

Published in:

Genetics, 2014, v. 196, n. 3, p. 867, doi. 10.1534/genetics.113.160440

By:

Nadaf, Javad;
Berri, Cecile;
Dunn, Ian;
Godet, Estelle;
Le Bihan-Duval, Elisabeth;
De Koning, Dirk Jan

Publication type:

Article

A PRDX1 mutant allele causes a MMACHC secondary epimutation in cblC patients.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02306-5

By:

Guéant, Jean-Louis;
Chéry, Céline;
Oussalah, Abderrahim;
Nadaf, Javad;
Coelho, David;
Josse, Thomas;
Flayac, Justine;
Robert, Aurélie;
Koscinski, Isabelle;
Gastin, Isabelle;
Filhine-Tresarrieu, Pierre;
Pupavac, Mihaela;
Brebner, Alison;
Watkins, David;
Pastinen, Tomi;
Montpetit, Alexandre;
Hariri, Fadi;
Tregouët, David;
Raby, Benjamin A;
Chung, Wendy K.

Publication type:

Article

A PRDX1 mutant allele causes a MMACHC secondary epimutation in cblC patients.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02306-5

By:

Guéant, Jean-Louis;
Chéry, Céline;
Oussalah, Abderrahim;
Nadaf, Javad;
Coelho, David;
Josse, Thomas;
Flayac, Justine;
Robert, Aurélie;
Koscinski, Isabelle;
Gastin, Isabelle;
Filhine-Tresarrieu, Pierre;
Pupavac, Mihaela;
Brebner, Alison;
Watkins, David;
Pastinen, Tomi;
Montpetit, Alexandre;
Hariri, Fadi;
Tregouët, David;
Raby, Benjamin A;
Chung, Wendy K.

Publication type:

Article

Identification of Nucleotide Changes of Two Known Causative Genes (BRCA2 and STK11) of Hereditary Breast Cancer in an Iranian Family using Exome Sequencing.

Published in:

Modares Journal of Medical Sciences: Pathobiology, 2014, v. 17, n. 3, p. 81

By:

Ataei-Kachouei, Mojgan;
Nadaf, Javad;
Akbari, Mohammad Taghi;
Atri, Morteza;
Majewski, Jacek;
Riazalhosseini, Yasser;
Garshasbi, Masoud

Publication type:

Article

Exome sequencing study of partial agenesis of the corpus callosum in men with developmental delay, epilepsy, and microcephaly.

Published in:

Molecular Genetics & Genomic Medicine, 2020, v. 8, n. 1, p. N.PAG, doi. 10.1002/mgg3.992

By:

Meloche, Jolyane;
Brunet, Vanessa;
Gagnon, Pierre‐Alexandre;
Lavoie, Marie‐Ève;
Bouchard, Jean‐Benoît;
Nadaf, Javad;
Majewski, Jacek;
Morin, Charles;
Laprise, Catherine

Publication type:

Article

Author Correction: Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy.

Published in:

2020

By:

Couturier, Charles P.;
Ayyadhury, Shamini;
Le, Phuong U.;
Nadaf, Javad;
Monlong, Jean;
Riva, Gabriele;
Allache, Redouane;
Baig, Salma;
Yan, Xiaohua;
Bourgey, Mathieu;
Lee, Changseok;
Wang, Yu Chang David;
Yong, V. Wee;
Guiot, Marie-Christine;
Najafabadi, Hamed;
Misic, Bratislav;
Antel, Jack;
Bourque, Guillaume;
Ragoussis, Jiannis;
Petrecca, Kevin

Publication type:

Correction Notice

Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17186-5

By:

Couturier, Charles P.;
Ayyadhury, Shamini;
Le, Phuong U.;
Nadaf, Javad;
Monlong, Jean;
Riva, Gabriele;
Allache, Redouane;
Baig, Salma;
Yan, Xiaohua;
Bourgey, Mathieu;
Lee, Changseok;
Wang, Yu Chang David;
Wee Yong, V.;
Guiot, Marie-Christine;
Najafabadi, Hamed;
Misic, Bratislav;
Antel, Jack;
Bourque, Guillaume;
Ragoussis, Jiannis;
Petrecca, Kevin

Publication type:

Article

DGCR8 microprocessor defect characterizes familial multinodular goiter with schwannomatosis.

Published in:

2020

By:

Rivera, Barbara;
Nadaf, Javad;
Fahiminiya, Somayyeh;
Apellaniz-Ruiz, Maria;
Saskin, Avi;
Chong, Anne-Sophie;
Sharma, Sahil;
Wagener, Rabea;
Revil, Timothée;
Condello, Vincenzo;
Harra, Zineb;
Hamel, Nancy;
Sabbaghian, Nelly;
Muchantef, Karl;
Thomas, Christian;
de Kock, Leanne;
Hébert-Blouin, Marie-Noëlle;
Bassenden, Angelia V.;
Rabenstein, Hannah;
Mete, Ozgur

Publication type:

journal article

A functionally impaired missense variant identified in French Canadian families implicates FANCI as a candidate ovarian cancer-predisposing gene.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00998-5

By:

Fierheller, Caitlin T.;
Guitton-Sert, Laure;
Alenezi, Wejdan M.;
Revil, Timothée;
Oros, Kathleen K.;
Gao, Yuandi;
Bedard, Karine;
Arcand, Suzanna L.;
Serruya, Corinne;
Behl, Supriya;
Meunier, Liliane;
Fleury, Hubert;
Fewings, Eleanor;
Subramanian, Deepak N.;
Nadaf, Javad;
Bruce, Jeffrey P.;
Bell, Rachel;
Provencher, Diane;
Foulkes, William D.;
El Haffaf, Zaki

Publication type:

Article

Effect of the prior distribution of SNP effects on the estimation of total breeding value.

Published in:

BMC Proceedings, 2012, v. 6, n. Suppl 2, p. 1, doi. 10.1186/1753-6561-6-S2-S6

By:

Nadaf, Javad;
Riggio, Valentina;
Tun-Ping Yu;
Pong-Wong, Ricardo

Publication type:

Article

Applying different genomic evaluation approaches on QTLMAS2010 dataset.

Published in:

BMC Proceedings, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1753-6561-5-S3-S9

By:

Nadaf, Javad;
Pong-Wong, Ricardo

Publication type:

Article

Extensive QTL and association analyses of the QTLMAS2009 Data.

Published in:

BMC Proceedings, 2010, v. 4, p. 1, doi. 10.1007/BF00225729

By:

Hadjipavlou, Georgia;
Hemani, Gib;
Leach, Richard;
Louro, Bruno;
Nadaf, Javad;
Rowe, Suzanne;
De Koning, Dirk-Jan

Publication type:

Article

Ovarian small cell carcinoma in one of a pair of monozygous twins.

Published in:

2019

By:

Fahiminiya, Somayyeh;
Sabbaghian, Nelly;
Albrecht, Steffen;
Nadaf, Javad;
Callegaro-Filho, Donato;
Foulkes, William D.

Publication type:

Letter

PRAME protein expression in DICER1‐related tumours.

Published in:

Journal of Pathology: Clinical Research, 2022, v. 8, n. 6, p. 579, doi. 10.1002/cjp2.293

By:

Thorner, Paul S;
Chong, Anne‐Sophie;
Nadaf, Javad;
Benlimame, Naciba;
Marrano, Paula;
Chami, Rose;
Fu, Lili;
Foulkes, William D

Publication type:

Article

PRAME protein expression in DICER1‐related tumours.

Published in:

Journal of Pathology: Clinical Research, 2022, v. 8, n. 3, p. 294, doi. 10.1002/cjp2.264

By:

Thorner, Paul S;
Chong, Anne‐Sophie;
Nadaf, Javad;
Benlimame, Naciba;
Marrano, Paula;
Chami, Rose;
Fu, Lili;
Foulkes, William D

Publication type:

Article

Whole-exome sequencing as a diagnostic tool: current challenges and future opportunities.

Published in:

Expert Review of Molecular Diagnostics, 2015, v. 15, n. 6, p. 749, doi. 10.1586/14737159.2015.1039516

By:

Tetreault, Martine;
Bareke, Eric;
Nadaf, Javad;
Alirezaie, Najmeh;
Majewski, Jacek

Publication type:

Article

Molecular characterization of DICER1-mutated pituitary blastoma.

Published in:

Acta Neuropathologica, 2021, v. 141, n. 6, p. 929, doi. 10.1007/s00401-021-02283-6

By:

Nadaf, Javad;
de Kock, Leanne;
Chong, Anne-Sophie;
Korbonits, Márta;
Thorner, Paul;
Benlimame, Naciba;
Fu, Lili;
Peet, Andrew;
Warner, Justin;
Ploner, Oswald;
Shuangshoti, Shanop;
Albrecht, Steffen;
Hamel, Nancy;
Priest, John R.;
Rivera, Barbara;
Ragoussis, Jiannis;
Foulkes, William D.

Publication type:

Article

<italic>NHLRC2</italic> variants identified in patients with fibrosis, neurodegeneration, and cerebral angiomatosis (FINCA): characterisation of a novel cerebropulmonary disease.

Published in:

Acta Neuropathologica, 2018, v. 135, n. 5, p. 727, doi. 10.1007/s00401-018-1817-z

By:

Uusimaa, Johanna;
Kaarteenaho, Riitta;
Paakkola, Teija;
Tuominen, Hannu;
Karjalainen, Minna K.;
Nadaf, Javad;
Varilo, Teppo;
Uusi-Mäkelä, Meri;
Suo-Palosaari, Maria;
Pietilä, Ilkka;
Hiltunen, Anniina E.;
Ruddock, Lloyd;
Alanen, Heli;
Biterova, Ekaterina;
Miinalainen, Ilkka;
Salminen, Annamari;
Soininen, Raija;
Manninen, Aki;
Sormunen, Raija;
Kaakinen, Mika

Publication type:

Article

Germline and somatic FGFR1 abnormalities in dysembryoplastic neuroepithelial tumors.

Published in:

Acta Neuropathologica, 2016, v. 131, n. 6, p. 847, doi. 10.1007/s00401-016-1549-x

By:

Rivera, Barbara;
Gayden, Tenzin;
Carrot-Zhang, Jian;
Nadaf, Javad;
Boshari, Talia;
Faury, Damien;
Zeinieh, Michele;
Blanc, Romeo;
Burk, David;
Fahiminiya, Somayyeh;
Bareke, Eric;
Schüller, Ulrich;
Monoranu, Camelia;
Sträter, Ronald;
Kerl, Kornelius;
Niederstadt, Thomas;
Kurlemann, Gerhard;
Ellezam, Benjamin;
Michalak, Zuzanna;
Thom, Maria

Publication type:

Article

Invasive growth of brain metastases is linked to CHI3L1 release from pSTAT3-positive astrocytes.

Published in:

Neuro-Oncology, 2024, v. 26, n. 6, p. 1052, doi. 10.1093/neuonc/noae013

By:

Dankner, Matthew;
Maritan, Sarah M;
Priego, Neibla;
Kruck, Georgia;
Nkili-Meyong, Andriniaina;
Nadaf, Javad;
Zhuang, Rebecca;
Annis, Matthew G;
Zuo, Dongmei;
Nowakowski, Alexander;
Biondini, Marco;
Kiepas, Alexander;
Mourcos, Caitlyn;
Le, Phuong;
Charron, François;
Inglebert, Yanis;
Savage, Paul;
Théret, Louis;
Guiot, Marie-Christine;
McKinney, R Anne

Publication type:

Article

Glioblastoma scRNA-seq shows treatment-induced, immune-dependent increase in mesenchymal cancer cells and structural variants in distal neural stem cells.

Published in:

Neuro-Oncology, 2022, v. 24, n. 9, p. 1494, doi. 10.1093/neuonc/noac085

By:

Couturier, Charles P;
Nadaf, Javad;
Li, Zhaorong;
Baig, Salma;
Riva, Gabriele;
Le, Phuong;
Kloosterman, Daan J;
Monlong, Jean;
Meyong, Andriniaina Nkili;
Allache, Redouane;
Degenhard, Theresa;
Al-Rashid, Mariam;
Guiot, Marie-Christine;
Bourque, Guillaume;
Ragoussis, Jiannis;
Akkari, Leila;
Quintana, Francisco J;
Petrecca, Kevin

Publication type:

Article

Invasive growth associated with cold-inducible RNA-binding protein expression drives recurrence of surgically resected brain metastases.

Published in:

Neuro-Oncology, 2021, v. 23, n. 9, p. 1470, doi. 10.1093/neuonc/noab002

By:

Dankner, Matthew;
Caron, Maxime;
Al-Saadi, Tariq;
Yu, WenQing;
Ouellet, Véronique;
Ezzeddine, Rima;
Maritan, Sarah M;
Annis, Matthew G;
Le, Phuong Uyen;
Nadaf, Javad;
Neubarth, Noah S;
Savage, Paul;
Zuo, Dongmei;
Couturier, Charles P;
Monlong, Jean;
Djambazian, Haig;
Altoukhi, Huda;
Bourque, Guillaume;
Ragoussis, Jiannis;
Diaz, Roberto J

Publication type:

Article