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Growth-rate dependency of ribosome abundance and translation elongation rate in Corynebacterium glutamicum differs from that in Escherichia coli.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41176-y
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- Article
Fluxome study of Pseudomonas fluorescens reveals major reorganisation of carbon flux through central metabolic pathways in response to inactivation of the anti-sigma factor MucA.
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- BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0148-0
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- Article
Practical sampling of constraint-based models: Optimized thinning boosts CHRR performance.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011378
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- Article
To be certain about the uncertainty: Bayesian statistics for <sup>13</sup>C metabolic flux analysis.
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- Biotechnology & Bioengineering, 2017, v. 114, n. 11, p. 2668, doi. 10.1002/bit.26379
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- Article
Natural isotope correction of MS/MS measurements for metabolomics and <sup>13</sup>C fluxomics.
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- Biotechnology & Bioengineering, 2016, v. 113, n. 5, p. 1137, doi. 10.1002/bit.25859
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- Article
Collisional fragmentation of central carbon metabolites in LC-MS/MS increases precision of <sup>13</sup>C metabolic flux analysis.
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- Biotechnology & Bioengineering, 2012, v. 109, n. 3, p. 763, doi. 10.1002/bit.24344
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- Article
Experimental design principles for isotopically instationary <sup>13</sup>C labeling experiments.
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- Biotechnology & Bioengineering, 2006, v. 94, n. 2, p. 234, doi. 10.1002/bit.20803
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- Article
Towards a Mechanistic Understanding of Factors Controlling the Stereoselectivity of Transketolase.
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- ChemCatChem, 2018, v. 10, n. 12, p. 2601, doi. 10.1002/cctc.201800299
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- Article
Live cell imaging of SOS and prophage dynamics in isogenic bacterial populations.
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- Molecular Microbiology, 2015, v. 98, n. 4, p. 636, doi. 10.1111/mmi.13147
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- Article
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation.
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- PLoS ONE, 2022, v. 17, n. 11, p. 1, doi. 10.1371/journal.pone.0277601
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- Article
<sup>13</sup>C labeling experiments at metabolic nonstationary conditions: An exploratory study.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-152
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- Article
The topology of metabolic isotope labeling networks.
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- BMC Bioinformatics, 2007, v. 8, p. 315, doi. 10.1186/1471-2105-8-315
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- Article
hopsy — a methods marketplace for convex polytope sampling in Python.
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- Bioinformatics, 2024, v. 40, n. 7, p. 1, doi. 10.1093/bioinformatics/btae430
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- Article
PolyRound: polytope rounding for random sampling in metabolic networks.
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- Bioinformatics, 2022, v. 38, n. 2, p. 566, doi. 10.1093/bioinformatics/btab552
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- Article
HOPS: high-performance library for (non-)uniform sampling of convex-constrained models.
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- Bioinformatics, 2021, v. 37, n. 12, p. 1776, doi. 10.1093/bioinformatics/btaa872
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- Article
Reversible jump MCMC for multi-model inference in Metabolic Flux Analysis.
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- Bioinformatics, 2020, v. 36, n. 1, p. 232, doi. 10.1093/bioinformatics/btz500
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- Article
When a single lineage is not enough: Uncertainty-Aware Tracking for spatio-temporal live-cell image analysis.
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- Bioinformatics, 2019, v. 35, n. 7, p. 1221, doi. 10.1093/bioinformatics/bty776
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- Article
Corrigendum: The Design of FluxML: A Universal Modeling Language for <sup>13</sup>C Metabolic Flux Analysis.
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- 2019
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- Correction Notice
Application of a Genetically Encoded Biosensor for Live Cell Imaging of L-Valine Production in Pyruvate Dehydrogenase Complex-Deficient <i>Corynebacterium glutamicum</i> Strains.
- Published in:
- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0085731
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- Article
CellSium: versatile cell simulator for microcolony ground truth generation.
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- Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac053
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- Article
High-Quality Genome-Scale Reconstruction of Corynebacterium glutamicum ATCC 13032.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.750206
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- Article
Spatiotemporal Microbial Single-Cell Analysis Using a High-Throughput Microfluidics Cultivation Platform.
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- Cytometry. Part A, 2015, v. 87, n. 12, p. 1101, doi. 10.1002/cyto.a.22779
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- Article
A pathogen-specific isotope tracing approach reveals metabolic activities and fluxes of intracellular Salmonella.
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- PLoS Biology, 2023, v. 21, n. 8, p. 1, doi. 10.1371/journal.pbio.3002198
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- Article
The benefits of being transient: isotope-based metabolic flux analysis at the short time scale.
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- Applied Microbiology & Biotechnology, 2011, v. 91, n. 5, p. 1247, doi. 10.1007/s00253-011-3390-4
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- Article
The Design of FluxML: A Universal Modeling Language for <sup>13</sup>C Metabolic Flux Analysis.
- Published in:
- Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01022
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- Article
Germination and Growth Analysis of Streptomyces lividans at the Single-Cell Level Under Varying Medium Compositions.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02680
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- Article
Image-Based Single Cell Profiling: High-Throughput Processing of Mother Machine Experiments.
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- PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0163453
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- Article
Visual workflows for <sup>13</sup>C-metabolic flux analysis.
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- Bioinformatics, 2015, v. 31, n. 3, p. 346, doi. 10.1093/bioinformatics/btu585
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- Article
13CFLUX2—high-performance software suite for 13C-metabolic flux analysis.
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- Bioinformatics, 2013, v. 29, n. 1, p. 143, doi. 10.1093/bioinformatics/bts646
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- Article
A Pareto approach to resolve the conflict between information gain and experimental costs: Multiple-criteria design of carbon labeling experiments.
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- PLoS Computational Biology, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pcbi.1006533
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- Article
Omix - A Visualization Tool for Metabolic Networks with Highest Usability and Customizability in Focus.
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- Chemie Ingenieur Technik (CIT), 2013, v. 85, n. 6, p. 849, doi. 10.1002/cite.201200234
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- Article
Enabling oxygen-controlled microfluidic cultures for spatiotemporal microbial single-cell analysis.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1198170
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- Article
mycelyso – high-throughput analysis of Streptomyces mycelium live cell imaging data.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3004-1
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- Article
Non-Invasive Microbial Metabolic Activity Sensing at Single Cell Level by Perfusion of Calcein Acetoxymethyl Ester.
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- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141768
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- Article
One‐shot <sup>13</sup>C<sup>15</sup>N‐metabolic flux analysis for simultaneous quantification of carbon and nitrogen flux.
- Published in:
- Molecular Systems Biology, 2023, v. 19, n. 3, p. 1, doi. 10.15252/msb.202211099
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- Article
<sup>13</sup>C Metabolic Flux Analysis Identifies an Unusual Route for Pyruvate Dissimilation in Mycobacteria which Requires Isocitrate Lyase and Carbon Dioxide Fixation.
- Published in:
- PLoS Pathogens, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.ppat.1002091
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- Article