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Discovery of Vibrio cholerae in Urban Sewage in Copenhagen, Denmark.
Published in:
Microbial Ecology, 2024, v. 87, n. 1, p. 1, doi. 10.1007/s00248-024-02419-7
By:
- Brinch, Christian;
- Otani, Saria;
- Munk, Patrick;
- van den Beld, Maaike;
- Franz, Eelco;
- Aarestrup, Frank M.
Publication type:
Article
Risk Factors for Antimicrobial Resistance in Turkey Farms: A Cross-Sectional Study in Three European Countries.
Published in:
Antibiotics (2079-6382), 2021, v. 10, n. 7, p. 820, doi. 10.3390/antibiotics10070820
By:
- Horie, Mayu;
- Yang, Dongsheng;
- Joosten, Philip;
- Munk, Patrick;
- Wadepohl, Katharina;
- Chauvin, Claire;
- Moyano, Gabriel;
- Skarżyńska, Magdalena;
- Dewulf, Jeroen;
- Aarestrup, Frank M.;
- Blaha, Thomas;
- Sanders, Pascal;
- Gonzalez-Zorn, Bruno;
- Wasyl, Dariusz;
- Wagenaar, Jaap A.;
- Heederik, Dick;
- Mevius, Dik;
- Schmitt, Heike;
- Smit, Lidwien A. M.;
- Van Gompel, Liese
Publication type:
Article
Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome.
Published in:
PLoS ONE, 2023, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0283676
By:
- Ostenfeld, Line Jensen;
- Munk, Patrick;
- Aarestrup, Frank M.;
- Otani, Saria
Publication type:
Article
ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets.
Published in:
Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae086
By:
- Martiny, Hannah-Marie;
- Pyrounakis, Nikiforos;
- Petersen, Thomas N;
- Lukjančenko, Oksana;
- Aarestrup, Frank M;
- Clausen, Philip T L C;
- Munk, Patrick
Publication type:
Article
Secrets of the Hospital Underbelly: Patterns of Abundance of Antimicrobial Resistance Genes in Hospital Wastewater Vary by Specific Antimicrobial and Bacterial Family.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.703560
By:
- Perry, Meghan R.;
- Lepper, Hannah C.;
- McNally, Luke;
- Wee, Bryan A.;
- Munk, Patrick;
- Warr, Amanda;
- Moore, Barbara;
- Kalima, Pota;
- Philip, Carol;
- de Roda Husman, Ana Maria;
- Aarestrup, Frank M.;
- Woolhouse, Mark E. J.;
- van Bunnik, Bram A. D.
Publication type:
Article
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08853-3
By:
- Hendriksen, Rene S.;
- Munk, Patrick;
- Njage, Patrick;
- van Bunnik, Bram;
- McNally, Luke;
- Lukjancenko, Oksana;
- Röder, Timo;
- Nieuwenhuijse, David;
- Pedersen, Susanne Karlsmose;
- Kjeldgaard, Jette;
- Kaas, Rolf S.;
- Clausen, Philip Thomas Lanken Conradsen;
- Vogt, Josef Korbinian;
- Leekitcharoenphon, Pimlapas;
- van de Schans, Milou G. M.;
- Zuidema, Tina;
- de Roda Husman, Ana Maria;
- Rasmussen, Simon;
- Petersen, Bent;
- The Global Sewage Surveillance project consortium
Publication type:
Article
The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children.
Published in:
Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-0859-7
By:
- Osakunor, Derick N. M.;
- Munk, Patrick;
- Mduluza, Takafira;
- Petersen, Thomas N.;
- Brinch, Christian;
- Ivens, Alasdair;
- Chimponda, Theresa;
- Amanfo, Seth A.;
- Murray, Janice;
- Woolhouse, Mark E. J.;
- Aarestrup, Frank M.;
- Mutapi, Francisca
Publication type:
Article
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach.
Published in:
PLoS ONE, 2019, v. 14, n. 10, p. 1, doi. 10.1371/journal.pone.0222531
By:
- Hendriksen, Rene S.;
- Lukjancenko, Oksana;
- Munk, Patrick;
- Hjelmsø, Mathis H.;
- Verani, Jennifer R.;
- Ng'eno, Eric;
- Bigogo, Godfrey;
- Kiplangat, Samuel;
- Oumar, Traoré;
- Bergmark, Lasse;
- Röder, Timo;
- Neatherlin, John C.;
- Clayton, Onyango;
- Hald, Tine;
- Karlsmose, Susanne;
- Pamp, Sünje J.;
- Fields, Barry;
- Montgomery, Joel M.;
- Aarestrup, Frank M.
Publication type:
Article
MAGICIAN: MAG simulation for investigating criteria for bioinformatic analysis.
Published in:
BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-023-09912-2
By:
- Steinke, Kat;
- Pamp, Sünje J.;
- Munk, Patrick
Publication type:
Article
MAGICIAN: MAG simulation for investigating criteria for bioinformatic analysis.
Published in:
BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-023-09912-2
By:
- Steinke, Kat;
- Pamp, Sünje J.;
- Munk, Patrick
Publication type:
Article
Metagenomics analysis of sewage for surveillance of antimicrobial resistance in South Africa.
Published in:
PLoS ONE, 2024, v. 19, n. 8, p. 1, doi. 10.1371/journal.pone.0309409
By:
- Smith, Anthony M.;
- Ramudzulu, Masindi;
- Munk, Patrick;
- Avot, Baptiste J. P.;
- Esterhuyse, Kerneels C. M.;
- van Blerk, Nico;
- Kwenda, Stanford;
- Sekwadi, Phuti
Publication type:
Article
A curated data resource of 214K metagenomes for characterization of the global antimicrobial resistome.
Published in:
PLoS Biology, 2022, v. 20, n. 9, p. 1, doi. 10.1371/journal.pbio.3001792
By:
- Martiny, Hannah-Marie;
- Munk, Patrick;
- Brinch, Christian;
- Aarestrup, Frank M.;
- Petersen, Thomas N.
Publication type:
Article
Genomic evolution of antimicrobial resistance in Escherichia coli.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-93970-7
By:
- Leekitcharoenphon, Pimlapas;
- Johansson, Markus Hans Kristofer;
- Munk, Patrick;
- Malorny, Burkhard;
- Skarżyńska, Magdalena;
- Wadepohl, Katharina;
- Moyano, Gabriel;
- Hesp, Ayla;
- Veldman, Kees T.;
- Bossers, Alex;
- EFFORT Consortium;
- Graveland, Haitske;
- van Essen, Alieda;
- Battisti, Antonio;
- Caprioli, Andrea;
- Blaha, Thomas;
- Hald, Tine;
- Daskalov, Hristo;
- Saatkamp, Helmut W.;
- Stärk, Katharina D. C.
Publication type:
Article
Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering.
Published in:
Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05083-8
By:
- Jespersen, Marie Louise;
- Munk, Patrick;
- Johansen, Joachim;
- Kaas, Rolf Sommer;
- Webel, Henry;
- Vigre, Håkan;
- Nielsen, Henrik Bjørn;
- Rasmussen, Simon;
- Aarestrup, Frank M.
Publication type:
Article
Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries.
Published in:
2019
By:
- Luiken, Roosmarijn E C;
- Gompel, Liese Van;
- Munk, Patrick;
- Sarrazin, Steven;
- Joosten, Philip;
- Dorado-García, Alejandro;
- Hansen, Rasmus Borup;
- Knudsen, Berith E;
- Bossers, Alex;
- Wagenaar, Jaap A;
- Aarestrup, Frank M;
- Dewulf, Jeroen;
- Mevius, Dik J;
- Heederik, Dick J J;
- Smit, Lidwien A M;
- Schmitt, Heike;
- consortium, EFFORT;
- Van Gompel, Liese;
- Borup Hansen, Rasmus;
- EFFORT consortium
Publication type:
journal article
The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries.
Published in:
2019
By:
- Gompel, Liese Van;
- Luiken, Roosmarijn E C;
- Sarrazin, Steven;
- Munk, Patrick;
- Knudsen, Berith E;
- Hansen, Rasmus B;
- Bossers, Alex;
- Aarestrup, Frank M;
- Dewulf, Jeroen;
- Wagenaar, Jaap A;
- Mevius, Dik J;
- Schmitt, Heike;
- Heederik, Dick J J;
- Dorado-García, Alejandro;
- Smit, Lidwien A M;
- Van Gompel, Liese;
- EFFORT consortium
Publication type:
journal article
A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds.
Published in:
2017
By:
- Munk, Patrick;
- Andersen, Vibe Dalhoff;
- de Knegt, Leonardo;
- Jensen, Marie Stengaard;
- Knudsen, Berith Elkær;
- Lukjancenko, Oksana;
- Mordhorst, Hanne;
- Clasen, Julie;
- Agersø, Yvonne;
- Folkesson, Anders;
- Pamp, Sünje Johanna;
- Vigre, Håkan;
- Aarestrup, Frank Møller
Publication type:
journal article

Found: 17