Works by Mungall, Chris

Results: 19

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-2

By:

Aranguren, Mikel Egaña;
Fernández-Breis, Jesualdo Tomás;
Mungall, Chris;
Antezana, Erick;
González2, Alejandro Rodríguez;
Wilkinson, Mark D.

Publication type:

Article

Mapping between the OBO and OWL ontology languages.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-2-S1-S3

By:

Tirmizi, Syed Hamid;
Aitken, Stuart;
Moreira, Dilvan A.;
Mungall, Chris;
Sequeda, Juan;
Shah, Nigam H.;
Miranker, Daniel P.

Publication type:

Article

Large-Scale Trends in the Evolution<br /> of Gene Structures within 11 Animal Genomes.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 3, p. e15, doi. 10.1371/journal.pcbi.0020015

By:

Yandell, Mark;
Mungall, Chris J.;
Smith, Chris;
Prochnik, Simon;
Kaminker, Joshua;
Hartzell, George;
Lewis, Suzanna;
Rubin, Gerald M.

Publication type:

Article

The ARKdb: genome databases for farmed and other animals.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 1, p. 106

By:

Hu, Jian;
Mungall, Chris;
Law, Andy;
Papworth, Richard;
Nelson, J. Paul;
Brown, Alison;
Simpson, Irene;
Leckie, Shirley;
Hillyard, David W. Burt, Alan L.;
Archibald, Alan L.

Publication type:

Article

Use of animal models for exome prioritization of rare disease genes

Published in:

Orphanet Journal of Rare Diseases, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1750-1172-9-S1-O19

By:

Smedley, Damian;
Kohler, Sebastian;
Bone, William;
Oellrich, Anika;
Jacobsen, Jules;
Genetics Project, Sanger Mouse;
Kai Wang;
Mungall, Chris;
Washington, Nicole;
Bauer, Sebastian;
Seelow, Dominic;
Krawitz, Peter;
Boerkel, Cornelius;
Gilissen, Christian;
Haendel, Melissa;
Lewis, Suzanna E;
Robinson, Peter N

Publication type:

Article

MIRO: guidelines for minimum information for the reporting of an ontology.

Published in:

Journal of Biomedical Semantics, 2018, v. 9, p. 1, doi. 10.1186/s13326-017-0172-7

By:

Matentzoglu, Nicolas;
Malone, James;
Mungall, Chris;
Stevens, Robert

Publication type:

Article

ONTO-ToolKit: enabling bio-ontology engineering via Galaxy.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S8

By:

Antezana, Erick;
Venkatesan, Aravind;
Mungall, Chris;
Mironov, Vladimir;
Kuiper, Martin

Publication type:

Article

An improved ontological representation of dendritic cells as a paradigm for all cell types.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-70

By:

Masci, Anna Maria;
Arighi, Cecilia N.;
Diehl, Alexander D.;
Lieberman, Anne E.;
Mungall, Chris;
Scheuermann, Richard H.;
Smith, Barry;
Cowell, Lindsay G.

Publication type:

Article

Survey-based naming conventions for use in OBO Foundry ontology development.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-125

By:

Schober, Daniel;
Smith, Barry;
Lewis, Suzanna E.;
Kusnierczyk, Waclaw;
Lomax, Jane;
Mungall, Chris;
Taylor, Chris F.;
Rocca-Serra, Philippe;
Sansone, Susanna-Assunta

Publication type:

Article

Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins.

Published in:

PLoS Computational Biology, 2008, v. 4, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000218

By:

Yandell, Mark;
Moore, Barry;
Salas, Fidel;
Mungall, Chris;
MacBride, Andrew;
White, Charles;
Reese, Martin G.

Publication type:

Article

ECO, the Evidence & Conclusion Ontology: community standard for evidence information.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D1186, doi. 10.1093/nar/gky1036

By:

Giglio, Michelle;
Tauber, Rebecca;
Nadendla, Suvarna;
Munro, James;
Olley, Dustin;
Ball, Shoshannah;
Mitraka, Elvira;
Schriml, Lynn M;
Gaudet, Pascale;
Hobbs, Elizabeth T;
Erill, Ivan;
Siegele, Deborah A;
Hu, James C;
Mungall, Chris;
Chibucos, Marcus C

Publication type:

Article

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D1168, doi. 10.1093/nar/gkx1152

By:

Cooper, Laurel;
Meier, Austin;
Laporte, Marie-Angélique;
Elser, Justin L;
Mungall, Chris;
Sinn, Brandon T;
Cavaliere, Dario;
Carbon, Seth;
Dunn, Nathan A;
Smith, Barry

Publication type:

Article

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D347, doi. 10.1093/nar/gkw918

By:

Ong, Edison;
Zuoshuang Xiang;
Bin Zhao;
Yue Liu;
Yu Lin;
Jie Zheng;
Mungall, Chris;
Courtot, Mélanie;
Ruttenberg, Alan;
Yongqun He

Publication type:

Article

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D737, doi. 10.1093/nar/gkw995

By:

Lizio, Marina;
Harshbarger, Jayson;
Abugessaisa, Imad;
Shuei Noguchi;
Atsushi Kondo;
Severin, Jessica;
Mungall, Chris;
Arenillas, David;
Mathelier, Anthony;
Medvedeva, Yulia A.;
Lennartsson, Andreas;
Drabløs, Finn;
Ramilowski, Jordan A.;
Rackham, Owen;
Gough, Julian;
Andersson, Robin;
Sandelin, Albin;
Ienasescu, Hans;
Hiromasa Ono;
Hidemasa Bono

Publication type:

Article

Computing on the anatomical form for disease discovery (338.1).

Published in:

FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.338.1

By:

Haendel, Melissa;
Mungall, Chris

Publication type:

Article

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease.

Published in:

Mammalian Genome, 2009, v. 20, n. 8, p. 457, doi. 10.1007/s00335-009-9208-3

By:

Hancock, John M.;
Mallon, Ann-Marie;
Beck, Tim;
Gkoutos, Georgios V.;
Mungall, Chris;
Schofield, Paul N.

Publication type:

Article

The Matchmaker Exchange API: Automating Patient Matching Through the Exchange of Structured Phenotypic and Genotypic Profiles.

Published in:

Human Mutation, 2015, v. 36, n. 10, p. 922, doi. 10.1002/humu.22850

By:

Buske, Orion J.;
Schiettecatte, François;
Hutton, Benjamin;
Dumitriu, Sergiu;
Misyura, Andriy;
Huang, Lijia;
Hartley, Taila;
Girdea, Marta;
Sobreira, Nara;
Mungall, Chris;
Brudno, Michael

Publication type:

Article

Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.

Published in:

Human Molecular Genetics, 2010, v. 19, n. 4, p. 707, doi. 10.1093/hmg/ddp521

By:

Karp, David R.;
Marthandan, Nishanth;
Marsh, Steven G.E.;
Ahn, Chul;
Arnett, Frank C.;
DeLuca, David S.;
Diehl, Alexander D.;
Dunivin, Raymond;
Eilbeck, Karen;
Feolo, Michael;
Guidry, Paula A.;
Helmberg, Wolfgang;
Lewis, Suzanna;
Mayes, Maureen D.;
Mungall, Chris;
Natale, Darren A.;
Peters, Bjoern;
Petersdorf, Effie;
Reveille, John D.;
Smith, Barry

Publication type:

Article

Ontology engineering.

Published in:

2010

By:

Alterovitz, Gil;
Xiang, Michael;
Hill, David P.;
Lomax, Jane;
Liu, Jonathan;
Cherkassky, Michael;
Dreyfuss, Jonathan;
Mungall, Chris;
Harris, Midori A.;
Dolan, Mary E.;
Blake, Judith A.;
Ramoni, Marco F.

Publication type:

Letter